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Gene: Mcrip1 (MAPK regulated co-repressor interacting protein 1) Rattus norvegicus

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Symbol:

Mcrip1

Name:

MAPK regulated co-repressor interacting protein 1

RGD ID:

1311925

Description:

Predicted to be involved in regulation of epithelial to mesenchymal transition. Predicted to be located in cytoplasmic stress granule and nucleus. Orthologous to human MCRIP1 (MAPK regulated corepressor interacting protein 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Fam195b; family with sequence similarity 195, member B; hypothetical protein LOC360677; LOC360677; mapk-regulated corepressor-interacting protein 1; RGD1311925; similar to BC003940 protein; uncharacterized protein LOC360677

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	106,318,985 - 106,326,442 (-)	NCBI		GRCr8
mRatBN7.2	10	105,820,656 - 105,828,146 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	105,820,656 - 105,828,271 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	110,924,820 - 110,926,871 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	110,387,847 - 110,389,898 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	105,741,104 - 105,743,155 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	109,720,144 - 109,727,595 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	109,720,144 - 109,722,195 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	109,313,274 - 109,320,680 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	109,933,593 - 109,935,644 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	109,948,097 - 109,950,148 (-)	NCBI
Celera	10	104,364,211 - 104,366,262 (-)	NCBI		Celera
Cytogenetic Map	10	q32.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mcrip1	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	Mcrip1 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of MCRIP1 mRNA	CTD	PMID:36331819
Mcrip1	Rat	1,2-dimethylhydrazine	increases expression	ISO	Mcrip1 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in increased expression of MCRIP1 mRNA	CTD	PMID:22206623
Mcrip1	Rat	17beta-estradiol	increases expression	EXP		6480464	Estradiol results in increased expression of MCRIP1 mRNA	CTD	PMID:32145629
Mcrip1	Rat	17beta-estradiol	increases expression	ISO	Mcrip1 (Mus musculus)	6480464	Estradiol results in increased expression of MCRIP1 mRNA	CTD	PMID:39298647
Mcrip1	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of MCRIP1 mRNA	CTD	PMID:33387578
Mcrip1	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Mcrip1 (Mus musculus)	6480464	bisphenol S results in increased expression of MCRIP1 mRNA	CTD	PMID:39298647
Mcrip1	Rat	aristolochic acid A	decreases expression	ISO	MCRIP1 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of MCRIP1 mRNA	CTD	PMID:33212167
Mcrip1	Rat	benzo[a]pyrene	affects methylation	ISO	MCRIP1 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of MCRIP1 5' UTR	CTD	PMID:27901495
Mcrip1	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of MCRIP1 mRNA	CTD	PMID:25181051 more ...
Mcrip1	Rat	bisphenol A	increases expression	ISO	MCRIP1 (Homo sapiens)	6480464	bisphenol A results in increased expression of MCRIP1 mRNA	CTD	PMID:25047013
Mcrip1	Rat	bisphenol A	decreases methylation	ISO	Mcrip1 (Mus musculus)	6480464	bisphenol A results in decreased methylation of MCRIP1 promoter	CTD	PMID:27312807
Mcrip1	Rat	cadmium atom	multiple interactions	ISO	MCRIP1 (Homo sapiens)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of MCRIP1 mRNA	CTD	PMID:35301059
Mcrip1	Rat	cadmium dichloride	increases expression	ISO	MCRIP1 (Homo sapiens)	6480464	Cadmium Chloride results in increased expression of MCRIP1 mRNA	CTD	PMID:38568856
Mcrip1	Rat	cadmium dichloride	multiple interactions	ISO	MCRIP1 (Homo sapiens)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of MCRIP1 mRNA	CTD	PMID:35301059
Mcrip1	Rat	carbon nanotube	decreases expression	ISO	Mcrip1 (Mus musculus)	6480464	Nanotubes and Carbon analog results in decreased expression of MCRIP1 mRNA	CTD	PMID:25554681
Mcrip1	Rat	chlorpyrifos	increases expression	ISO	Mcrip1 (Mus musculus)	6480464	Chlorpyrifos results in increased expression of MCRIP1 mRNA	CTD	PMID:37019170
Mcrip1	Rat	cobalt dichloride	decreases expression	EXP		6480464	cobaltous chloride results in decreased expression of MCRIP1 mRNA	CTD	PMID:24386269
Mcrip1	Rat	Dibutyl phosphate	affects expression	ISO	MCRIP1 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of MCRIP1 mRNA	CTD	PMID:37042841
Mcrip1	Rat	doxorubicin	increases expression	ISO	MCRIP1 (Homo sapiens)	6480464	Doxorubicin results in increased expression of MCRIP1 mRNA	CTD	PMID:29803840
Mcrip1	Rat	endosulfan	increases expression	EXP		6480464	Endosulfan results in increased expression of MCRIP1 mRNA	CTD	PMID:29391264
Mcrip1	Rat	epoxiconazole	increases expression	ISO	Mcrip1 (Mus musculus)	6480464	epoxiconazole results in increased expression of MCRIP1 mRNA	CTD	PMID:35436446
Mcrip1	Rat	fenthion	decreases expression	ISO	Mcrip1 (Mus musculus)	6480464	Fenthion results in decreased expression of MCRIP1 mRNA	CTD	PMID:34813904
Mcrip1	Rat	flutamide	increases expression	EXP		6480464	Flutamide results in increased expression of MCRIP1 mRNA	CTD	PMID:24136188
Mcrip1	Rat	FR900359	decreases phosphorylation	ISO	MCRIP1 (Homo sapiens)	6480464	FR900359 results in decreased phosphorylation of MCRIP1 protein	CTD	PMID:37730182
Mcrip1	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of MCRIP1 mRNA	CTD	PMID:33387578
Mcrip1	Rat	ivermectin	decreases expression	ISO	MCRIP1 (Homo sapiens)	6480464	Ivermectin results in decreased expression of MCRIP1 protein	CTD	PMID:32959892
Mcrip1	Rat	methidathion	decreases expression	ISO	Mcrip1 (Mus musculus)	6480464	methidathion results in decreased expression of MCRIP1 mRNA	CTD	PMID:34813904
Mcrip1	Rat	nitrates	multiple interactions	ISO	Mcrip1 (Mus musculus)	6480464	[Particulate Matter results in increased abundance of Nitrates] which results in increased expression of MCRIP1 mRNA	CTD	PMID:35964746
Mcrip1	Rat	paracetamol	increases expression	ISO	MCRIP1 (Homo sapiens)	6480464	Acetaminophen results in increased expression of MCRIP1 mRNA	CTD	PMID:29067470
Mcrip1	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of MCRIP1 mRNA	CTD	PMID:33387578
Mcrip1	Rat	perfluorohexanesulfonic acid	decreases expression	ISO	MCRIP1 (Homo sapiens)	6480464	perfluorohexanesulfonic acid results in decreased expression of MCRIP1 mRNA	CTD	PMID:25812627
Mcrip1	Rat	perfluorononanoic acid	decreases expression	ISO	MCRIP1 (Homo sapiens)	6480464	perfluoro-n-nonanoic acid results in decreased expression of MCRIP1 mRNA	CTD	PMID:25812627
Mcrip1	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Mcrip1 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of MCRIP1 mRNA	CTD	PMID:36331819
Mcrip1	Rat	perfluorooctane-1-sulfonic acid	decreases expression	ISO	MCRIP1 (Homo sapiens)	6480464	perfluorooctane sulfonic acid results in decreased expression of MCRIP1 mRNA	CTD	PMID:25812627
Mcrip1	Rat	perfluorooctanoic acid	decreases expression	ISO	MCRIP1 (Homo sapiens)	6480464	perfluorooctanoic acid results in decreased expression of MCRIP1 mRNA	CTD	PMID:25812627
Mcrip1	Rat	resveratrol	multiple interactions	ISO	MCRIP1 (Homo sapiens)	6480464	[Plant Extracts co-treated with Resveratrol] results in decreased expression of MCRIP1 mRNA	CTD	PMID:23557933
Mcrip1	Rat	sodium arsenite	decreases expression	ISO	MCRIP1 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of MCRIP1 mRNA	CTD	PMID:34032870
Mcrip1	Rat	sodium arsenite	decreases expression	ISO	Mcrip1 (Mus musculus)	6480464	sodium arsenite results in decreased expression of MCRIP1 mRNA	CTD	PMID:36209798
Mcrip1	Rat	sodium fluoride	increases expression	ISO	Mcrip1 (Mus musculus)	6480464	Sodium Fluoride results in increased expression of MCRIP1 protein	CTD	PMID:28918527
Mcrip1	Rat	thapsigargin	decreases expression	ISO	MCRIP1 (Homo sapiens)	6480464	Thapsigargin results in decreased expression of MCRIP1 mRNA	CTD	PMID:22378314
Mcrip1	Rat	thiram	increases expression	ISO	MCRIP1 (Homo sapiens)	6480464	Thiram results in increased expression of MCRIP1 mRNA	CTD	PMID:38568856
Mcrip1	Rat	titanium dioxide	decreases methylation	ISO	Mcrip1 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of MCRIP1 promoter	CTD	PMID:35295148
Mcrip1	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of MCRIP1 mRNA	CTD	PMID:33387578
Mcrip1	Rat	triphenyl phosphate	affects expression	ISO	MCRIP1 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of MCRIP1 mRNA	CTD	PMID:37042841
Mcrip1	Rat	Triptolide	increases expression	ISO	Mcrip1 (Mus musculus)	6480464	triptolide results in increased expression of MCRIP1 mRNA	CTD	PMID:32835833
Mcrip1	Rat	triptonide	decreases expression	ISO	Mcrip1 (Mus musculus)	6480464	triptonide results in decreased expression of MCRIP1 mRNA	CTD	PMID:33045310
Mcrip1	Rat	tunicamycin	decreases expression	ISO	MCRIP1 (Homo sapiens)	6480464	Tunicamycin results in decreased expression of MCRIP1 mRNA	CTD	PMID:22378314
Mcrip1	Rat	valproic acid	decreases expression	ISO	MCRIP1 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of MCRIP1 mRNA	CTD	PMID:29154799
Mcrip1	Rat	valproic acid	increases methylation	ISO	MCRIP1 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of MCRIP1 gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mcrip1	Rat	gene expression	acts_upstream_of_or_within	ISO	Mcrip1 (Mus musculus)	1624291	PMID:31240265	RGD	PMID:31240265
Mcrip1	Rat	negative regulation of gene expression, epigenetic	acts_upstream_of_or_within	ISO	Mcrip1 (Mus musculus)	1624291	PMID:31240265	RGD	PMID:31240265
Mcrip1	Rat	regulation of epithelial to mesenchymal transition	involved_in	ISS	UniProtKB:C9JLW8	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Mcrip1	Rat	regulation of epithelial to mesenchymal transition	involved_in	ISO	MCRIP1 (Homo sapiens)	1624291	PMID:25728771	RGD	PMID:25728771

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mcrip1	Rat	cytoplasm	located_in	ISS	UniProtKB:C9JLW8	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Mcrip1	Rat	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Mcrip1	Rat	cytoplasm	located_in	ISO	MCRIP1 (Homo sapiens)	1624291	PMID:26184334	RGD	PMID:26184334
Mcrip1	Rat	cytoplasmic stress granule	located_in	ISS	UniProtKB:C9JLW8	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Mcrip1	Rat	cytoplasmic stress granule	located_in	ISO	MCRIP1 (Homo sapiens)	1624291	PMID:26184334	RGD	PMID:26184334
Mcrip1	Rat	cytoplasmic stress granule	located_in	IEA	UniProtKB-SubCell:SL-0496	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Mcrip1	Rat	nucleus	located_in	ISO	MCRIP1 (Homo sapiens)	1624291	PMID:25728771 and PMID:26184334	RGD	PMID:25728771 and PMID:26184334
Mcrip1	Rat	nucleus	located_in	ISS	UniProtKB:C9JLW8	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Mcrip1	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Mcrip1	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mcrip1	Rat	protein binding	enables	ISO	MCRIP1 (Homo sapiens)	1624291	UniProtKB:P26196 more ...	RGD	PMID:25728771 and PMID:26184334

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932	PMID:25728771	PMID:26184334

Mcrip1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	106,318,985 - 106,326,442 (-)	NCBI		GRCr8
mRatBN7.2	10	105,820,656 - 105,828,146 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	105,820,656 - 105,828,271 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	110,924,820 - 110,926,871 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	110,387,847 - 110,389,898 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	105,741,104 - 105,743,155 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	109,720,144 - 109,727,595 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	109,720,144 - 109,722,195 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	109,313,274 - 109,320,680 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	109,933,593 - 109,935,644 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	109,948,097 - 109,950,148 (-)	NCBI
Celera	10	104,364,211 - 104,366,262 (-)	NCBI		Celera
Cytogenetic Map	10	q32.3	NCBI

MCRIP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	81,822,361 - 81,833,291 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	81,822,361 - 81,833,302 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	79,780,237 - 79,791,167 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Celera	17	76,383,760 - 76,394,631 (-)	NCBI		Celera
Cytogenetic Map	17	q25.3	NCBI
HuRef	17	75,181,966 - 75,184,105 (-)	NCBI		HuRef
CHM1_1	17	79,866,495 - 79,877,383 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	82,689,526 - 82,700,456 (-)	NCBI		T2T-CHM13v2.0

Mcrip1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	120,433,714 - 120,440,553 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	120,433,714 - 120,440,553 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	120,542,888 - 120,549,727 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	120,542,888 - 120,549,727 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	120,404,202 - 120,411,041 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	120,358,980 - 120,365,794 (-)	NCBI		MGSCv36	mm8
Celera	11	132,278,296 - 132,285,087 (-)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	84.25	NCBI

Mcrip1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	1,329,646 - 1,335,505 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955506	1,329,646 - 1,335,505 (+)	NCBI	ChiLan1.0	ChiLan1.0

MCRIP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	98,357,981 - 98,368,856 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	103,258,751 - 103,269,655 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	76,227,462 - 76,238,363 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	81,930,301 - 81,934,404 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

MCRIP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	443,155 - 451,741 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	444,617 - 450,605 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	1,045,318 - 1,053,894 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	1,036,523 - 1,045,104 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	9	1,061,682 - 1,070,258 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	1,188,261 - 1,196,835 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	1,267,187 - 1,275,766 (+)	NCBI		UU_Cfam_GSD_1.0

Mcrip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	1,050,205 - 1,055,443 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	5,356,428 - 5,361,730 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936594	5,356,516 - 5,361,734 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MCRIP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	1,137,816 - 1,144,555 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	1,137,797 - 1,144,556 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

MCRIP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	73,696,708 - 73,707,436 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	73,696,539 - 73,707,045 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	45,150,158 - 45,160,848 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mcrip1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	10,687,269 - 10,689,093 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624801	10,687,269 - 10,694,188 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Mcrip1
19 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	166
Count of miRNA genes:	112
Interacting mature miRNAs:	121
Transcripts:	ENSRNOT00000054960
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	64890616	107211142	Rat
12880384	Cm107	Cardiac mass QTL 107		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)		90404397	107211142	Rat
12880385	Cm108	Cardiac mass QTL 108		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)		90404397	107211142	Rat
1354641	Bvd2	Brain ventricular dilatation QTL 2	6.36	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	10	93223816	107057807	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	66978955	107211142	Rat
2303589	Bw87	Body weight QTL 87	2		body mass (VT:0001259)	body weight (CMO:0000012)	10	81285008	107211142	Rat
12880396	Am13	Aortic mass QTL 13		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	90404397	107211142	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
12880398	Kidm67	Kidney mass QTL 67		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	90404397	107211142	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	66978955	107211142	Rat
12880395	Cm109	Cardiac mass QTL 109		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	90404397	107211142	Rat
1579915	Bp280	Blood pressure QTL 280		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90404397	107211142	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68420376	107211142	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	72224939	107211142	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76452683	107211142	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	82685200	107211142	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	88539139	107211142	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
10450498	Bp384	Blood pressure QTL 384		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	67750049	107211142	Rat
4889492	Pancm2	Pancreatic morphology QTL 2	3.2		pancreatic beta cell morphology trait (VT:0005217)	ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)	10	76748906	107211142	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70199100	107211142	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	94759759	107211142	Rat
1578672	Bmd16	Bone mineral density QTL 16	6.2		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	96703043	107057807	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2293646	Bss25	Bone structure and strength QTL 25	10.96	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	10	69738412	107211142	Rat
2300172	Bmd57	Bone mineral density QTL 57	9.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	10	69738412	107211142	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72224939	107211142	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87307617	107211142	Rat
2292438	Bp311	Blood pressure QTL 311			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	107211142	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
2292436	Bp310	Blood pressure QTL 310			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	94759759	107211142	Rat
724530	Bp149	Blood pressure QTL 149		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90627439	107211142	Rat
1300137	Bp186	Blood pressure QTL 186	3.57		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	10	90627439	107057807	Rat
631538	Oia5	Oil induced arthritis QTL 5			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87055121	107211142	Rat
1642980	Bp300	Blood pressure QTL 300			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68383129	107211142	Rat
2293663	Bss33	Bone structure and strength QTL 33	9.34	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	10	69738412	107211142	Rat
1578663	Bss18	Bone structure and strength QTL 18	3.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	10	96703043	107057807	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001108311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC131537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC158709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000054960 ⟹ ENSRNOP00000051843

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	105,820,656 - 105,828,271 (-)	Ensembl
Rnor_6.0 Ensembl	10	109,720,144 - 109,722,195 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103843 ⟹ ENSRNOP00000086239

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	105,820,656 - 105,825,863 (-)	Ensembl

RefSeq Acc Id:

NM_001108311 ⟹ NP_001101781

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	106,318,985 - 106,321,036 (-)	NCBI
mRatBN7.2	10	105,820,656 - 105,822,707 (-)	NCBI
Rnor_6.0	10	109,720,144 - 109,722,195 (-)	NCBI
Rnor_5.0	10	109,313,274 - 109,320,680 (-)	NCBI
RGSC_v3.4	10	109,933,593 - 109,935,644 (-)	RGD
Celera	10	104,364,211 - 104,366,262 (-)	RGD

Sequence:

show sequence

AGGCCGCAGTATCCAGCAGCTGAGCAGTAGGACTAGACGTACCAGCAATGACCAGCTCTCCTGTCTCTAGAGTTGTCTACAACGGGAAGAGGAATAGCAGTCCCCGCTCTCCCACCAACAGCAGTGAG
ATCTTCACACCAGCGCATGAAGAGAATGTGCGCTTCATTTATGAAGCCTGGCAGGGTGTTGAGCGAGACCTGCGCAGCCAGCTGTCCAGTGGGGAGCGGTGCCTAGTGGAGGAATATGTGGAGAAAGT
TCCCAACCCCAGCCTGAAGACCTTCAAGCCCATCGACCTGAGCGACCTGAAGCGCCGGAACACGCAGGATGCCAAGAAGTCCTAGAGTGCCTGGCGCCCCTCCCCTGGCCTCCAGAAGATCAGGGTGC
ACTTGATGTTGGTTTCCTCTGTTCCTGTGGCGCTGCTCCTGGGAGGGGGGGAGGAGAGTGAGCTCTAGCAGGCCGTAATCCCCAGAGCCAGCAGGATTGATGATCAAGGCCCTACCTGTCCTCTCCAG
GGTCTCAAGTTGCCCCTGTCACTGGGGGAATAGGAGTCTGACTGTATCAGCCCTGTCCTTTTCTCCTGGCCAGCTGCATCTTGGGTAGCACCTGGCCCTACCTACCCAGCCCTCTCTGCTGTTACCTG
CCATGCCTCGCCACTCTCCTTCCTGGCTACTTAAGGTCAGGAAGGAAAAAAGGGGACCTCTGTTTCTTCGGCTGTGGAACCTTGAAGTGACCAGAAAGTAGGACATGTGCAGTCCCACCTGCATCCAG
TGTGGCTCTCTCCATGGAGACTTGCTGTTCTTCTGCCCTGGACATTTGGGGAGCTCCCCCTTCCATCCCCACTGTCCATCCTGACCCTTCCTTGCCCCAGTTTCAGAGTCGAATCAGCTCTGGGCCTA
GGACAGTACTGGCTCTCTGAGAGCAACTAGGCCTTTTGTCCTGGTACCTGCAGCCCTGTGGTCACAGCAGTGCTCTTGGACAGGGCACTAAGGCTGACCCTGAAGGAGTGGTGCTGCCAGGCGTGTCC
TGGCTTTCTGGGGTGTACTGGGAGGATCACCAAGACCCCCTTTTCTCGTGCCCTCTTGAATCCAAGTGTCTATGTAGCTTTGGAGACCGAGGGTCTGTGAATAAAGGTGGGTGGCACTGGAAG

hide sequence

RefSeq Acc Id:

XM_006247896 ⟹ XP_006247958

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	106,318,986 - 106,326,436 (-)	NCBI
mRatBN7.2	10	105,820,657 - 105,828,136 (-)	NCBI
Rnor_6.0	10	109,720,145 - 109,727,589 (-)	NCBI
Rnor_5.0	10	109,313,274 - 109,320,680 (-)	NCBI

Sequence:

show sequence

TGCGCGTTGCGTCACTTCCGGCCGGCCCACTAGAAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGGTGAGGCCGCAGTATCCAGCAGCTGAGCAGTAGGACTAGACGTACCAGCAATGACCA
GCTCTCCTGTCTCTAGAGTTGTCTACAACGGGAAGAGGAATAGCAGTCCCCGCTCTCCCACCAACAGCAGTGAGATCTTCACACCAGCGCATGAAGAGAATGTGCGCTTCATTTATGAAGCCTGGCAG
GGTGTTGAGCGAGACCTGCGCAGCCAGCTGTCCAGTGGGGAGCGGTGCCTAGTGGAGGAATATGTGGAGAAAGTTCCCAACCCCAGCCTGAAGACCTTCAAGCCCATCGACCTGAGCGACCTGAAGCG
CCGGAACACGCAGGATGCCAAGAAGTCCTAGAGTGCCTGGCGCCCCTCCCCTGGCCTCCAGAAGATCAGGGTGCACTTGATGTTGGTTTCCTCTGTTCCTGTGGCGCTGCTCCTGGGAGGGGGGGAGG
AGAGTGAGCTCTAGCAGGCCGTAATCCCCAGAGCCAGCAGGATTGATGATCAAGGCCCTACCTGTCCTCTCCAGGGTCTCAAGTTGCCCCTGTCACTGGGGGAATAGGAGTCTGACTGTATCAGCCCT
GTCCTTTTCTCCTGGCCAGCTGCATCTTGGGTAGCACCTGGCCCTACCTACCCAGCCCTCTCTGCTGTTACCTGCCATGCCTCGCCACTCTCCTTCCTGGCTACTTAAGGTCAGGAAGGAAAAAAGGG
GACCTCTGTTTCTTCGGCTGTGGAACCTTGAAGTGACCAGAAAGTAGGACATGTGCAGTCCCACCTGCATCCAGTGTGGCTCTCTCCATGGAGACTTGCTGTTCTTCTGCCCTGGACATTTGGGGAGC
TCCCCCTTCCATCCCCACTGTCCATCCTGACCCTTCCTTGCCCCAGTTTCAGAGTCGAATCAGCTCTGGGCCTAGGACAGTACTGGCTCTCTGAGAGCAACTAGGCCTTTTGTCCTGGTACCTGCAGC
CCTGTGGTCACAGCAGTGCTCTTGGACAGGGCACTAAGGCTGACCCTGAAGGAGTGGTGCTGCCAGGCGTGTCCTGGCTTTCTGGGGTGTACTGGGAGGATCACCAAGACCCCCTTTTCTCGTGCCCT
CTTGAATCCAAGTGTCTATGTAGCTTTGGAGACCGAGGGTCTGTGAATAAAGGTGGGTGGCACTGGAA

hide sequence

RefSeq Acc Id:

XM_017597414 ⟹ XP_017452903

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	106,318,986 - 106,326,442 (-)	NCBI
mRatBN7.2	10	105,820,657 - 105,828,076 (-)	NCBI
Rnor_6.0	10	109,720,145 - 109,727,523 (-)	NCBI

Sequence:

show sequence

GGAGGGTGAGGTGAGGAAGGCCGCAGTATCCAGCAGCTGAGCAGTAGGACTAGACGTACCAGCAATGACCAGCTCTCCTGTCTCTAGAGTTGTCTACAACGGGAAGAGGAATAGCAGTCCCCGCTCTC
CCACCAACAGCAGTGAGATCTTCACACCAGCGCATGAAGAGAATGTGCGCTTCATTTATGAAGCCTGGCAGGGTGTTGAGCGAGACCTGCGCAGCCAGCTGTCCAGTGGGGAGCGGTGCCTAGTGGAG
GAATATGTGGAGAAAGTTCCCAACCCCAGCCTGAAGACCTTCAAGCCCATCGACCTGAGCGACCTGAAGCGCCGGAACACGCAGGATGCCAAGAAGTCCTAGAGTGCCTGGCGCCCCTCCCCTGGCCT
CCAGAAGATCAGGGTGCACTTGATGTTGGTTTCCTCTGTTCCTGTGGCGCTGCTCCTGGGAGGGGGGGAGGAGAGTGAGCTCTAGCAGGCCGTAATCCCCAGAGCCAGCAGGATTGATGATCAAGGCC
CTACCTGTCCTCTCCAGGGTCTCAAGTTGCCCCTGTCACTGGGGGAATAGGAGTCTGACTGTATCAGCCCTGTCCTTTTCTCCTGGCCAGCTGCATCTTGGGTAGCACCTGGCCCTACCTACCCAGCC
CTCTCTGCTGTTACCTGCCATGCCTCGCCACTCTCCTTCCTGGCTACTTAAGGTCAGGAAGGAAAAAAGGGGACCTCTGTTTCTTCGGCTGTGGAACCTTGAAGTGACCAGAAAGTAGGACATGTGCA
GTCCCACCTGCATCCAGTGTGGCTCTCTCCATGGAGACTTGCTGTTCTTCTGCCCTGGACATTTGGGGAGCTCCCCCTTCCATCCCCACTGTCCATCCTGACCCTTCCTTGCCCCAGTTTCAGAGTCG
AATCAGCTCTGGGCCTAGGACAGTACTGGCTCTCTGAGAGCAACTAGGCCTTTTGTCCTGGTACCTGCAGCCCTGTGGTCACAGCAGTGCTCTTGGACAGGGCACTAAGGCTGACCCTGAAGGAGTGG
TGCTGCCAGGCGTGTCCTGGCTTTCTGGGGTGTACTGGGAGGATCACCAAGACCCCCTTTTCTCGTGCCCTCTTGAATCCAAGTGTCTATGTAGCTTTGGAGACCGAGGGTCTGTGAATAAAGGTGGG
TGGCACTGGAA

hide sequence

RefSeq Acc Id:

XM_017597415 ⟹ XP_017452904

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	106,318,986 - 106,326,422 (-)	NCBI
mRatBN7.2	10	105,820,657 - 105,828,146 (-)	NCBI
Rnor_6.0	10	109,720,145 - 109,727,595 (-)	NCBI

Sequence:

show sequence

TGCGCCTGCGCGTTGCGTCACTTCCGGCCGGCCCACTAGAAGCGGCGGCGGCGGCGGCGGCGGC
GGCGGCGAGGAGGGTGAGGCCGCAGTATCCAGCAGCTGAGCAGTAGGACTAGACGTACCAGCAATGACCAGAGTTGTCTACAACGGGAAGAGGAATAGCAGTCCCCGCTCTCCCACCAACAGCAGTGA
GATCTTCACACCAGCGCATGAAGAGAATGTGCGCTTCATTTATGAAGCCTGGCAGGGTGTTGAGCGAGACCTGCGCAGCCAGCTGTCCAGTGGGGAGCGGTGCCTAGTGGAGGAATATGTGGAGAAAG
TTCCCAACCCCAGCCTGAAGACCTTCAAGCCCATCGACCTGAGCGACCTGAAGCGCCGGAACACGCAGGATGCCAAGAAGTCCTAGAGTGCCTGGCGCCCCTCCCCTGGCCTCCAGAAGATCAGGGTG
CACTTGATGTTGGTTTCCTCTGTTCCTGTGGCGCTGCTCCTGGGAGGGGGGGAGGAGAGTGAGCTCTAGCAGGCCGTAATCCCCAGAGCCAGCAGGATTGATGATCAAGGCCCTACCTGTCCTCTCCA
GGGTCTCAAGTTGCCCCTGTCACTGGGGGAATAGGAGTCTGACTGTATCAGCCCTGTCCTTTTCTCCTGGCCAGCTGCATCTTGGGTAGCACCTGGCCCTACCTACCCAGCCCTCTCTGCTGTTACCT
GCCATGCCTCGCCACTCTCCTTCCTGGCTACTTAAGGTCAGGAAGGAAAAAAGGGGACCTCTGTTTCTTCGGCTGTGGAACCTTGAAGTGACCAGAAAGTAGGACATGTGCAGTCCCACCTGCATCCA
GTGTGGCTCTCTCCATGGAGACTTGCTGTTCTTCTGCCCTGGACATTTGGGGAGCTCCCCCTTCCATCCCCACTGTCCATCCTGACCCTTCCTTGCCCCAGTTTCAGAGTCGAATCAGCTCTGGGCCT
AGGACAGTACTGGCTCTCTGAGAGCAACTAGGCCTTTTGTCCTGGTACCTGCAGCCCTGTGGTCACAGCAGTGCTCTTGGACAGGGCACTAAGGCTGACCCTGAAGGAGTGGTGCTGCCAGGCGTGTC
CTGGCTTTCTGGGGTGTACTGGGAGGATCACCAAGACCCCCTTTTCTCGTGCCCTCTTGAATCCAAGTGTCTATGTAGCTTTGGAGACCGAGGGTCTGTGAATAAAGGTGGGTGGCACTGGAA

hide sequence

RefSeq Acc Id:

XM_039086443 ⟹ XP_038942371

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	106,318,986 - 106,326,425 (-)	NCBI
mRatBN7.2	10	105,820,657 - 105,828,057 (-)	NCBI

RefSeq Acc Id:

XM_063269480 ⟹ XP_063125550

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	106,318,986 - 106,322,889 (-)	NCBI

RefSeq Acc Id:

XM_063269481 ⟹ XP_063125551

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	106,318,986 - 106,326,442 (-)	NCBI

RefSeq Acc Id:

XM_063269482 ⟹ XP_063125552

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	106,318,986 - 106,326,411 (-)	NCBI


Protein RefSeqs	NP_001101781	(Get FASTA)	NCBI Sequence Viewer
	XP_006247958	(Get FASTA)	NCBI Sequence Viewer
	XP_017452903	(Get FASTA)	NCBI Sequence Viewer
	XP_017452904	(Get FASTA)	NCBI Sequence Viewer
	XP_038942371	(Get FASTA)	NCBI Sequence Viewer
	XP_063125550	(Get FASTA)	NCBI Sequence Viewer
	XP_063125551	(Get FASTA)	NCBI Sequence Viewer
	XP_063125552	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58710	(Get FASTA)	NCBI Sequence Viewer
	B0BN72	(Get FASTA)	NCBI Sequence Viewer
	EDM06851	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000051843

RefSeq Acc Id:	NP_001101781 ⟸ NM_001108311
- UniProtKB:	B0BN72 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTSSPVSRVVYNGKRNSSPRSPTNSSEIFTPAHEENVRFIYEAWQGVERDLRSQLSSGERCLVEEYVEKVPNPSLKTFKPIDLSDLKRRNTQDAKKS hide sequence

RefSeq Acc Id:	XP_006247958 ⟸ XM_006247896
- Peptide Label:	isoform X1
- UniProtKB:	B0BN72 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTSSPVSRVVYNGKRNSSPRSPTNSSEIFTPAHEENVRFIYEAWQGVERDLRSQLSSGERCLVEEYVEKVPNPSLKTFKPIDLSDLKRRNTQDAKKS hide sequence

RefSeq Acc Id:	XP_017452904 ⟸ XM_017597415
- Peptide Label:	isoform X2
- Sequence:	show sequence MTRVVYNGKRNSSPRSPTNSSEIFTPAHEENVRFIYEAWQGVERDLRSQLSSGERCLVEEYVEKVPNPSLKTFKPIDLSDLKRRNTQDAKKS hide sequence

RefSeq Acc Id:	XP_017452903 ⟸ XM_017597414
- Peptide Label:	isoform X1
- UniProtKB:	B0BN72 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTSSPVSRVVYNGKRNSSPRSPTNSSEIFTPAHEENVRFIYEAWQGVERDLRSQLSSGERCLVEEYVEKVPNPSLKTFKPIDLSDLKRRNTQDAKKS hide sequence

Ensembl Acc Id:

ENSRNOP00000051843 ⟸ ENSRNOT00000054960

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B0BN72-F1-model_v2	AlphaFold	B0BN72	1-97	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13697962

Promoter ID:

EPDNEW_R8486

Type:

single initiation site

Name:

Mcrip1_1

Description:

MAPK regulated co-repressor interacting protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	109,722,192 - 109,722,252	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-22412	BioCyc
Ensembl Genes	ENSRNOG00000036691	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000054960	ENTREZGENE
IMAGE_CLONE	IMAGE:9034656	IMAGE-MGC_LOAD
InterPro	MCRIP	UniProtKB/Swiss-Prot
KEGG Report	rno:360677	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:187832	IMAGE-MGC_LOAD
NCBI Gene	360677	ENTREZGENE
Pfam	FAM195	UniProtKB/Swiss-Prot
PhenoGen	Mcrip1	PhenoGen
RatGTEx	ENSRNOG00000036691	RatGTEx
UniProt	A0A8I6A5G6_RAT	UniProtKB/TrEMBL
	A0A8L2QPR3_RAT	UniProtKB/TrEMBL
	B0BN72	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-20	Mcrip1	MAPK regulated co-repressor interacting protein 1	Fam195b	family with sequence similarity 195, member B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-02-12	Fam195b	family with sequence similarity 195, member B	RGD1311925	similar to BC003940 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1311925	similar to BC003940 protein	RGD1311925_predicted	similar to BC003940 protein (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1311925_predicted	similar to BC003940 protein (predicted)	LOC360677_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC360677_predicted	similar to BC003940 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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