Stag1 (STAG1 cohesin complex component) - Rat Genome Database

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Gene: Stag1 (STAG1 cohesin complex component) Rattus norvegicus
Analyze
Symbol: Stag1
Name: STAG1 cohesin complex component
RGD ID: 1310744
Description: Predicted to enable chromatin binding activity. Predicted to be involved in mitotic spindle assembly and sister chromatid cohesion. Predicted to be located in cilium; mitotic spindle pole; and nuclear lumen. Predicted to be part of cohesin complex. Predicted to be active in chromatin and nucleus. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 47. Orthologous to human STAG1 (STAG1 cohesin complex component); PARTICIPATES IN cell cycle pathway, mitotic; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cohesin subunit SA-1; LOC315958; stromal antigen 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88110,057,981 - 110,443,666 (+)NCBIGRCr8
mRatBN7.28101,179,039 - 101,564,684 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8101,179,039 - 101,564,677 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8106,843,035 - 107,226,697 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08105,042,380 - 105,426,017 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08102,884,916 - 103,268,547 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08108,958,099 - 109,342,738 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8108,958,046 - 109,342,738 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08108,373,849 - 108,760,298 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48105,524,756 - 105,919,971 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18105,630,998 - 105,937,601 (+)NCBI
Celera8100,575,837 - 100,956,349 (+)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stag1Ratautosomal dominant intellectual developmental disorder 47  ISOSTAG1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 more ...
Stag1RatDevelopmental Disabilities  ISOSTAG1 (Homo sapiens)8554872ClinVar Annotator: match by term: Global developmental delayClinVarPMID:25741896
Stag1Ratgenetic disease  ISOSTAG1 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 more ...
Stag1Ratintellectual disability  ISOSTAG1 (Homo sapiens)8554872ClinVar Annotator: match by term: intellectual disabilitiesClinVarPMID:25741868 and PMID:28119487
Stag1RatNeurodevelopmental Disorders  ISOSTAG1 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
Stag1RatPrimary Lymphedema with Myelodysplasia  ISOSTAG1 (Homo sapiens)8554872ClinVar Annotator: match by term: Emberger syndromeClinVarPMID:22147895 and PMID:25741868
Stag1Ratprimary ovarian insufficiency  ISOSTAG1 (Homo sapiens)8554872ClinVar Annotator: match by term: Premature ovarian insufficiencyClinVarPMID:25741868
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stag1Ratintellectual disability  ISOSTAG1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28191889
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stag1Ratautosomal dominant intellectual developmental disorder 47  ISOSTAG1 (Homo sapiens)7240710 OMIM 

1 to 20 of 104 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stag1Rat(-)-epigallocatechin 3-gallate multiple interactionsISOSTAG1 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of STAG1 mRNACTDPMID:22079256
Stag1Rat1,2-dichloroethane increases expressionISOStag1 (Mus musculus)6480464ethylene dichloride results in increased expression of STAG1 mRNACTDPMID:28960355
Stag1Rat17alpha-ethynylestradiol multiple interactionsISOStag1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of STAG1 mRNACTDPMID:17942748
Stag1Rat17beta-estradiol increases expressionISOSTAG1 (Homo sapiens)6480464Estradiol results in increased expression of STAG1 mRNACTDPMID:36581016
Stag1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOStag1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of STAG1 mRNACTDPMID:17942748
Stag1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of STAG1 mRNACTDPMID:34747641
Stag1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOStag1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of STAG1 mRNACTDPMID:21570461
Stag1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of STAG1 mRNACTDPMID:21215274
Stag1Rat2,4-diaminotoluene decreases expressionISOStag1 (Mus musculus)64804642 and 4-diaminotoluene results in decreased expression of STAG1 mRNACTDPMID:20713471
Stag1Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of STAG1 mRNACTDPMID:21346803
Stag1Rat2-hydroxypropanoic acid decreases expressionISOSTAG1 (Homo sapiens)6480464Lactic Acid results in decreased expression of STAG1 mRNACTDPMID:30851411
Stag1Rat3,3',5,5'-tetrabromobisphenol A increases expressionISOSTAG1 (Homo sapiens)6480464tetrabromobisphenol A results in increased expression of STAG1 proteinCTDPMID:31675489
Stag1Rat4-nitrophenol decreases expressionISOStag1 (Mus musculus)64804644-nitrophenol results in decreased expression of STAG1 mRNACTDPMID:34673133
Stag1Rat5-aza-2'-deoxycytidine affects expressionISOSTAG1 (Homo sapiens)6480464Decitabine affects the expression of STAG1 mRNACTDPMID:23300844
Stag1Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of STAG1 mRNACTDPMID:30047161
Stag1Ratafimoxifene increases expressionISOSTAG1 (Homo sapiens)6480464afimoxifene results in increased expression of STAG1 mRNACTDPMID:16849584
Stag1Rataflatoxin B1 affects expressionISOSTAG1 (Homo sapiens)6480464Aflatoxin B1 affects the expression of STAG1 proteinCTDPMID:20106945
Stag1Rataflatoxin B1 decreases methylationISOSTAG1 (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of STAG1 intronCTDPMID:30157460
Stag1Rataflatoxin B1 decreases expressionISOSTAG1 (Homo sapiens)6480464Aflatoxin B1 results in decreased expression of STAG1 mRNACTDPMID:21632981
Stag1Ratamitrole decreases expressionEXP 6480464Amitrole results in decreased expression of STAG1 mRNACTDPMID:30047161

1 to 20 of 104 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stag1Ratcell division involved_inIEAUniProtKB-KW:KW-01321600115GO_REF:0000043UniProtGO_REF:0000043
Stag1Ratcell division involved_inIEAUniRule:UR0016837571600115GO_REF:0000104UniProtGO_REF:0000104
Stag1Ratchromosome segregation involved_inIEAUniProtKB-KW:KW-01591600115GO_REF:0000043UniProtGO_REF:0000043
Stag1Ratmitotic spindle assembly involved_inISOSTAG1 (Homo sapiens)1624291 PMID:11590136RGDPMID:11590136
Stag1Ratmitotic spindle assembly involved_inIEAUniProtKB:Q8WVM7 and ensembl:ENSP000003726891600115GO_REF:0000107EnsemblGO_REF:0000107
Stag1Ratsister chromatid cohesion involved_inIEAUniRule:UR0016837571600115GO_REF:0000104UniProtGO_REF:0000104
Stag1Ratsister chromatid cohesion involved_inIBAPANTHER:PTN000127652 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033

Cellular Component
1 to 20 of 27 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stag1Ratchromatin located_inIEAUniRule:UR0016837571600115GO_REF:0000104UniProtGO_REF:0000104
Stag1Ratchromatin located_inIEAUniProtKB:Q9D3E6 and ensembl:ENSMUSP000001162051600115GO_REF:0000107EnsemblGO_REF:0000107
Stag1Ratchromatin is_active_inIBAFB:FBgn0020616 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Stag1Ratchromatin located_inISOStag1 (Mus musculus)1624291 PMID:23920377RGDPMID:23920377
Stag1Ratchromatin located_inIEAUniProtKB:Q8WVM7 and ensembl:ENSP000003726891600115GO_REF:0000107EnsemblGO_REF:0000107
Stag1Ratchromatin located_inISOSTAG1 (Homo sapiens)1624291 PMID:16682347RGDPMID:16682347
Stag1Ratchromosome located_inIEAUniProtKB-SubCell:SL-04681600115GO_REF:0000044UniProtGO_REF:0000044
Stag1Ratchromosome located_inIEAUniProtKB-KW:KW-01581600115GO_REF:0000043UniProtGO_REF:0000043
Stag1Ratchromosome, centromeric region located_inIEAUniProtKB-SubCell:SL-00471600115GO_REF:0000044UniProtGO_REF:0000044
Stag1Ratcilium located_inIEAUniProtKB:Q8WVM7 and ensembl:ENSP000003726891600115GO_REF:0000107EnsemblGO_REF:0000107
Stag1Ratcilium located_inISOSTAG1 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Stag1Ratcohesin complex part_ofISOSTAG1 (Homo sapiens)1624291 PMID:11590136 and PMID:22628566RGDPMID:11590136 and PMID:22628566
Stag1Ratcohesin complex part_ofIEAUniProtKB:Q8WVM7 and ensembl:ENSP000003726891600115GO_REF:0000107EnsemblGO_REF:0000107
Stag1Ratcohesin complex part_ofIBAFB:FBgn0020616 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Stag1Ratcohesin complex part_ofIEAUniRule:UR0016837571600115GO_REF:0000104UniProtGO_REF:0000104
Stag1Ratmitotic spindle pole located_inISOSTAG1 (Homo sapiens)1624291 PMID:11590136RGDPMID:11590136
Stag1Ratmitotic spindle pole located_inIEAUniProtKB:Q8WVM7 and ensembl:ENSP000003726891600115GO_REF:0000107EnsemblGO_REF:0000107
Stag1Ratnuclear body located_inIEAUniProtKB:Q8WVM7 and ensembl:ENSP000003726891600115GO_REF:0000107EnsemblGO_REF:0000107
Stag1Ratnuclear body located_inISOSTAG1 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Stag1Ratnuclear matrix located_inISOSTAG1 (Homo sapiens)1624291 PMID:11590136RGDPMID:11590136
1 to 20 of 27 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stag1Ratchromatin binding enablesIBAFB:FBgn0020616 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Stag1Ratchromatin binding enablesIEAUniProtKB:Q9D3E6 and ensembl:ENSMUSP000001162051600115GO_REF:0000107EnsemblGO_REF:0000107
Stag1Ratchromatin binding enablesISOStag1 (Mus musculus)1624291 PMID:22415368 and PMID:22780989RGDPMID:22415368 and PMID:22780989
Stag1Ratprotein binding enablesISOSTAG1 (Homo sapiens)1624291UniProtKB:P54274 more ...RGDPMID:15855230 more ...

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stag1Ratcell cycle pathway, mitotic  IEA 6907045 KEGGrno:04110

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:11590136   PMID:16682347   PMID:22415368   PMID:22628566   PMID:22780989   PMID:23920377  



Stag1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88110,057,981 - 110,443,666 (+)NCBIGRCr8
mRatBN7.28101,179,039 - 101,564,684 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8101,179,039 - 101,564,677 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8106,843,035 - 107,226,697 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08105,042,380 - 105,426,017 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08102,884,916 - 103,268,547 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08108,958,099 - 109,342,738 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8108,958,046 - 109,342,738 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08108,373,849 - 108,760,298 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48105,524,756 - 105,919,971 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18105,630,998 - 105,937,601 (+)NCBI
Celera8100,575,837 - 100,956,349 (+)NCBICelera
Cytogenetic Map8q31NCBI
STAG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383136,336,236 - 136,752,378 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3136,336,236 - 136,752,403 (-)EnsemblGRCh38hg38GRCh38
GRCh373136,055,078 - 136,471,220 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363137,538,689 - 137,953,935 (-)NCBINCBI36Build 36hg18NCBI36
Build 343137,539,634 - 137,953,907NCBI
Celera3134,481,201 - 134,897,660 (-)NCBICelera
Cytogenetic Map3q22.3NCBI
HuRef3133,432,986 - 133,848,794 (-)NCBIHuRef
CHM1_13136,019,532 - 136,434,908 (-)NCBICHM1_1
T2T-CHM13v2.03139,076,901 - 139,493,092 (-)NCBIT2T-CHM13v2.0
Stag1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399100,479,762 - 100,840,597 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9100,479,851 - 100,841,428 (+)EnsemblGRCm39 Ensembl
GRCm389100,597,709 - 100,958,544 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9100,597,798 - 100,959,375 (+)EnsemblGRCm38mm10GRCm38
MGSCv379100,544,042 - 100,858,963 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369100,452,975 - 100,767,896 (+)NCBIMGSCv36mm8
Celera9100,181,961 - 100,493,069 (+)NCBICelera
Cytogenetic Map9E3.3- E4NCBI
cM Map952.77NCBI
Stag1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555012,173,695 - 2,465,331 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555012,070,614 - 2,465,339 (+)NCBIChiLan1.0ChiLan1.0
STAG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22134,265,633 - 134,673,022 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13134,270,361 - 134,677,749 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03133,388,783 - 133,795,985 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13140,852,107 - 141,138,138 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3140,852,107 - 141,138,138 (-)Ensemblpanpan1.1panPan2
STAG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12332,786,730 - 33,126,526 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2332,788,693 - 33,063,242 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2332,771,605 - 33,164,943 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02333,315,839 - 33,709,912 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2333,317,464 - 33,709,915 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12332,998,600 - 33,392,453 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02333,065,872 - 33,458,349 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02333,309,556 - 33,702,917 (-)NCBIUU_Cfam_GSD_1.0
Stag1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560272,412,665 - 72,769,849 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365299,172,166 - 9,530,304 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365299,173,162 - 9,530,321 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1377,321,872 - 77,863,491 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11377,321,872 - 77,863,533 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21384,691,737 - 84,783,451 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STAG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11553,706,847 - 54,103,712 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1553,706,974 - 54,101,707 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604126,751,454 - 27,153,053 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stag1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473012,761,460 - 13,086,965 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473012,762,099 - 13,158,603 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Stag1
1434 total Variants

Predicted Target Of
Summary Value
Count of predictions:666
Count of miRNA genes:283
Interacting mature miRNAs:370
Transcripts:ENSRNOT00000066917
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 28 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)888612425107550209Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat

1 to 10 of 28 rows
RH143633  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28101,492,056 - 101,492,280 (+)MAPPERmRatBN7.2
Rnor_6.08109,271,804 - 109,272,027NCBIRnor6.0
Rnor_5.08108,688,889 - 108,689,112UniSTSRnor5.0
RGSC_v3.48105,846,732 - 105,846,955UniSTSRGSC3.4
Celera8100,884,172 - 100,884,395UniSTS
RH 3.4 Map81173.6UniSTS
Cytogenetic Map8q31UniSTS
SHGC-64944  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28101,564,554 - 101,564,661 (+)MAPPERmRatBN7.2
Rnor_6.08109,342,609 - 109,342,715NCBIRnor6.0
Rnor_5.08108,760,169 - 108,760,275UniSTSRnor5.0
RGSC_v3.48105,919,849 - 105,919,955UniSTSRGSC3.4
Celera8100,956,227 - 100,956,333UniSTS
Cytogenetic Map8q31UniSTS
A009F46  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28101,563,325 - 101,563,462 (+)MAPPERmRatBN7.2
Rnor_6.08109,341,380 - 109,341,516NCBIRnor6.0
Rnor_5.08108,758,940 - 108,759,076UniSTSRnor5.0
RGSC_v3.48105,918,620 - 105,918,756UniSTSRGSC3.4
Celera8100,954,998 - 100,955,134UniSTS
Cytogenetic Map8q31UniSTS
BI302210  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28101,303,265 - 101,303,429 (+)MAPPERmRatBN7.2
Rnor_6.08109,083,571 - 109,083,734NCBIRnor6.0
Rnor_5.08108,500,329 - 108,500,492UniSTSRnor5.0
RGSC_v3.48105,650,476 - 105,650,639UniSTSRGSC3.4
Celera8100,694,608 - 100,694,771UniSTS
RH 3.4 Map81174.8UniSTS
Cytogenetic Map8q31UniSTS
BE121282  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28101,287,129 - 101,287,283 (+)MAPPERmRatBN7.2
Rnor_6.08109,067,032 - 109,067,185NCBIRnor6.0
Rnor_5.08108,483,790 - 108,483,943UniSTSRnor5.0
RGSC_v3.48105,634,341 - 105,634,494UniSTSRGSC3.4
Celera8100,678,657 - 100,678,810UniSTS
RH 3.4 Map81175.1UniSTS
Cytogenetic Map8q31UniSTS
G32517  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28101,563,325 - 101,563,463 (+)MAPPERmRatBN7.2
Rnor_6.08109,341,380 - 109,341,517NCBIRnor6.0
Rnor_5.08108,758,940 - 108,759,077UniSTSRnor5.0
RGSC_v3.48105,918,620 - 105,918,757UniSTSRGSC3.4
Celera8100,954,998 - 100,955,135UniSTS
Cytogenetic Map8q31UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000066917   ⟹   ENSRNOP00000061907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8101,179,039 - 101,564,677 (+)Ensembl
Rnor_6.0 Ensembl8108,958,099 - 109,342,731 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079618   ⟹   ENSRNOP00000074990
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8101,179,039 - 101,564,677 (+)Ensembl
Rnor_6.0 Ensembl8108,958,046 - 109,342,738 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100986   ⟹   ENSRNOP00000076659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8101,179,039 - 101,564,677 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109411   ⟹   ENSRNOP00000096619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8101,179,039 - 101,562,136 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111891   ⟹   ENSRNOP00000078635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8101,272,293 - 101,564,677 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115852   ⟹   ENSRNOP00000090312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8101,272,293 - 101,564,677 (+)Ensembl
RefSeq Acc Id: NM_001108179   ⟹   NP_001101649
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,058,056 - 110,443,659 (+)NCBI
mRatBN7.28101,179,039 - 101,564,677 (+)NCBI
Rnor_6.08108,958,099 - 109,342,731 (+)NCBI
Rnor_5.08108,373,849 - 108,760,298 (+)NCBI
RGSC_v3.48105,524,756 - 105,919,971 (+)RGD
Celera8100,575,837 - 100,956,349 (+)RGD
Sequence:
RefSeq Acc Id: XM_006243631   ⟹   XP_006243693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,057,981 - 110,443,666 (+)NCBI
mRatBN7.28101,179,044 - 101,564,684 (+)NCBI
Rnor_6.08108,958,104 - 109,342,738 (+)NCBI
Rnor_5.08108,373,849 - 108,760,298 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243632   ⟹   XP_006243694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,058,089 - 110,443,666 (+)NCBI
mRatBN7.28101,179,070 - 101,564,684 (+)NCBI
Rnor_6.08108,958,141 - 109,342,738 (+)NCBI
Rnor_5.08108,373,849 - 108,760,298 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008766528   ⟹   XP_008764750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,058,069 - 110,443,666 (+)NCBI
mRatBN7.28101,179,070 - 101,564,684 (+)NCBI
Rnor_6.08108,958,141 - 109,342,738 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039081551   ⟹   XP_038937479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,271,208 - 110,443,666 (+)NCBI
mRatBN7.28101,392,214 - 101,564,684 (+)NCBI
RefSeq Acc Id: XM_039081552   ⟹   XP_038937480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,269,666 - 110,443,666 (+)NCBI
mRatBN7.28101,391,177 - 101,564,684 (+)NCBI
RefSeq Acc Id: XM_039081553   ⟹   XP_038937481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,057,981 - 110,388,667 (+)NCBI
mRatBN7.28101,179,067 - 101,509,677 (+)NCBI
RefSeq Acc Id: XM_039081554   ⟹   XP_038937482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,057,981 - 110,365,479 (+)NCBI
mRatBN7.28101,179,067 - 101,487,746 (+)NCBI
RefSeq Acc Id: XM_063265596   ⟹   XP_063121666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,240,057 - 110,443,666 (+)NCBI
RefSeq Acc Id: XM_063265597   ⟹   XP_063121667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88110,244,685 - 110,443,666 (+)NCBI
1 to 5 of 16 rows
1 to 5 of 16 rows
RefSeq Acc Id: NP_001101649   ⟸   NM_001108179
- UniProtKB: D4A3Q2 (UniProtKB/TrEMBL),   A6I2F7 (UniProtKB/TrEMBL),   A0A8I6G238 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243693   ⟸   XM_006243631
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006243694   ⟸   XM_006243632
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K9G6 (UniProtKB/TrEMBL),   A0A8I6ADB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764750   ⟸   XM_008766528
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K9G6 (UniProtKB/TrEMBL),   A0A8I6ADB5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074990   ⟸   ENSRNOT00000079618
SCD

Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K9G6-F1-model_v2 AlphaFold A0A0G2K9G6 1-1258 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13696218
Promoter ID:EPDNEW_R6743
Type:multiple initiation site
Name:Stag1_1
Description:stromal antigen 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08108,958,137 - 108,958,197EPDNEW


1 to 32 of 32 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-29369 BioCyc
Ensembl Genes ENSRNOG00000015389 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066917 ENTREZGENE
  ENSRNOT00000066917.2 UniProtKB/TrEMBL
  ENSRNOT00000079618 ENTREZGENE
  ENSRNOT00000079618.2 UniProtKB/TrEMBL
  ENSRNOT00000100986.1 UniProtKB/TrEMBL
  ENSRNOT00000109411.1 UniProtKB/TrEMBL
  ENSRNOT00000111891.1 UniProtKB/TrEMBL
  ENSRNOT00000115852 ENTREZGENE
  ENSRNOT00000115852.1 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  Cohesin_Scc3/SA UniProtKB/TrEMBL
  SCD UniProtKB/TrEMBL
  STAG UniProtKB/TrEMBL
KEGG Report rno:315958 UniProtKB/TrEMBL
NCBI Gene 315958 ENTREZGENE
PANTHER COHESIN SUBUNIT SA-1 UniProtKB/TrEMBL
  PTHR11199 UniProtKB/TrEMBL
Pfam SCD UniProtKB/TrEMBL
  STAG UniProtKB/TrEMBL
PhenoGen Stag1 PhenoGen
PROSITE SCD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015389 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A0G2K9G6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y920 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ADB5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AQI4_RAT UniProtKB/TrEMBL
  A0A8I6G238 ENTREZGENE, UniProtKB/TrEMBL
  A6I2F7 ENTREZGENE, UniProtKB/TrEMBL
  D4A3Q2 ENTREZGENE, UniProtKB/TrEMBL
1 to 32 of 32 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-05 Stag1  STAG1 cohesin complex component  Stag1  stromal antigen 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Stag1  stromal antigen 1   Stag1_predicted  stromal antigen 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Stag1_predicted  stromal antigen 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED