Stag1 (stromal antigen 1) - Rat Genome Database
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Gene: Stag1 (stromal antigen 1) Mus musculus
Analyze
Symbol: Stag1
Name: stromal antigen 1
RGD ID: 1321828
MGI Page MGI
Description: Exhibits chromatin binding activity. Predicted to be involved in mitotic spindle assembly and sister chromatid cohesion. Localizes to chromatin. Is expressed in several structures, including alimentary system; genitourinary system; integumental system; midbrain; and telencephalon. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 47. Orthologous to human STAG1 (stromal antigen 1); PARTICIPATES IN cell cycle pathway, mitotic; INTERACTS WITH 1,2-dichloroethane; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AU045003; cohesin subunit SA-1; SA; SA-1; Scc; Scc3; SCC3 homolog 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399100,479,762 - 100,840,597 (+)NCBIGRCm39mm39
GRCm389100,597,709 - 100,958,544 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9100,597,798 - 100,959,375 (+)EnsemblGRCm38mm10GRCm38
MGSCv379100,544,042 - 100,858,963 (+)NCBIGRCm37mm9NCBIm37
MGSCv369100,452,975 - 100,767,896 (+)NCBImm8
Celera9100,181,961 - 100,493,069 (+)NCBICelera
Cytogenetic Map9E3.3- E4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IBA,IDA,ISO)
chromosome  (IEA)
cohesin complex  (IBA,ISO)
mitotic spindle pole  (ISO)
nuclear body  (ISO)
nuclear matrix  (ISO)
nucleoplasm  (ISO,TAS)
nucleus  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:9305759   PMID:10349636   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12034751   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273  
PMID:14681479   PMID:15840001   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18219272   PMID:18799693   PMID:21242291   PMID:21589869   PMID:21873635   PMID:22415365   PMID:22415368  
PMID:22560297   PMID:22780989   PMID:23920377   PMID:23937658   PMID:24457600   PMID:24797475   PMID:25735743   PMID:26167872   PMID:31040226   PMID:31495782  


Genomics

Comparative Map Data
Stag1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399100,479,762 - 100,840,597 (+)NCBIGRCm39mm39
GRCm389100,597,709 - 100,958,544 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9100,597,798 - 100,959,375 (+)EnsemblGRCm38mm10GRCm38
MGSCv379100,544,042 - 100,858,963 (+)NCBIGRCm37mm9NCBIm37
MGSCv369100,452,975 - 100,767,896 (+)NCBImm8
Celera9100,181,961 - 100,493,069 (+)NCBICelera
Cytogenetic Map9E3.3- E4NCBI
STAG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3136,336,236 - 136,752,403 (-)EnsemblGRCh38hg38GRCh38
GRCh383136,336,235 - 136,752,412 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh373136,055,077 - 136,471,245 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363137,538,689 - 137,953,935 (-)NCBINCBI36hg18NCBI36
Build 343137,539,634 - 137,953,907NCBI
Celera3134,481,201 - 134,897,660 (-)NCBI
Cytogenetic Map3q22.3NCBI
HuRef3133,432,986 - 133,848,794 (-)NCBIHuRef
CHM1_13136,019,532 - 136,434,908 (-)NCBICHM1_1
Stag1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08108,958,099 - 109,342,738 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8108,958,046 - 109,342,738 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08108,373,849 - 108,760,298 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48105,524,756 - 105,919,971 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18105,630,998 - 105,937,601 (+)NCBI
Celera8100,575,837 - 100,956,349 (+)NCBICelera
Cytogenetic Map8q31NCBI
Stag1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555012,173,695 - 2,465,331 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555012,070,614 - 2,465,339 (+)NCBIChiLan1.0ChiLan1.0
STAG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13140,852,107 - 141,138,138 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3140,852,107 - 141,138,138 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03133,388,783 - 133,795,985 (-)NCBIMhudiblu_PPA_v0panPan3
STAG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2332,788,693 - 33,063,242 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12332,786,730 - 33,126,526 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Stag1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365299,173,162 - 9,530,321 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1377,321,872 - 77,863,493 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11377,321,872 - 77,863,533 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21384,691,737 - 84,783,451 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STAG1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11553,706,847 - 54,103,712 (+)NCBI
ChlSab1.1 Ensembl1553,706,974 - 54,101,707 (+)Ensembl
Stag1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473012,762,099 - 13,158,603 (-)NCBI

Position Markers
RH126637  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389100,792,123 - 100,792,324UniSTSGRCm38
MGSCv379100,692,542 - 100,692,743UniSTSGRCm37
Celera9100,330,270 - 100,330,471UniSTS
Cytogenetic Map9F1UniSTS
Whitehead/MRC_RH91013.32UniSTS
BE686015  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389100,957,847 - 100,957,932UniSTSGRCm38
MGSCv379100,858,266 - 100,858,351UniSTSGRCm37
Celera9100,492,371 - 100,492,456UniSTS
Cytogenetic Map9F1UniSTS
Whitehead/MRC_RH91022.14UniSTS
D1Mit208  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381185,481,626 - 185,481,760UniSTSGRCm38
MGSCv371187,305,505 - 187,305,639UniSTSGRCm37
Celera1192,434,988 - 192,435,101UniSTS
cM Map1101.5UniSTS
Whitehead Genetic1103.8UniSTS
Whitehead/MRC_RH12309.25UniSTS
Whitehead_YAC1 UniSTS
AU045003  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389100,958,187 - 100,958,385UniSTSGRCm38
MGSCv379100,858,606 - 100,858,804UniSTSGRCm37
Celera9100,492,712 - 100,492,910UniSTS
Cytogenetic Map9F1UniSTS
Whitehead/MRC_RH91022.25UniSTS
RH125455  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389100,702,674 - 100,702,831UniSTSGRCm38
MGSCv379100,603,093 - 100,603,250UniSTSGRCm37
Celera9100,241,025 - 100,241,182UniSTS
Cytogenetic Map9F1UniSTS
RH125797  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389100,699,354 - 100,699,471UniSTSGRCm38
MGSCv379100,599,773 - 100,599,890UniSTSGRCm37
Celera9100,237,713 - 100,237,830UniSTS
Cytogenetic Map9F1UniSTS
Whitehead/MRC_RH91015.85UniSTS
UniSTS:236236  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389100,957,555 - 100,957,761UniSTSGRCm38
MGSCv379100,857,974 - 100,858,180UniSTSGRCm37
Celera9100,492,079 - 100,492,285UniSTS
Cytogenetic Map9F1UniSTS
G32517  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389100,957,189 - 100,957,330UniSTSGRCm38
MGSCv379100,857,608 - 100,857,749UniSTSGRCm37
Celera9100,491,713 - 100,491,854UniSTS
Cytogenetic Map9F1UniSTS
AI465300  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389100,932,519 - 100,932,601UniSTSGRCm38
MGSCv379100,832,938 - 100,833,020UniSTSGRCm37
Cytogenetic Map9F1UniSTS
Whitehead/MRC_RH91022.25UniSTS
SHGC-64944  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389100,958,415 - 100,958,521UniSTSGRCm38
MGSCv379100,858,834 - 100,858,940UniSTSGRCm37
Celera9100,492,940 - 100,493,046UniSTS
Cytogenetic Map9F1UniSTS
A009F46  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389100,957,189 - 100,957,329UniSTSGRCm38
MGSCv379100,857,608 - 100,857,748UniSTSGRCm37
Celera9100,491,713 - 100,491,853UniSTS
Cytogenetic Map9F1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49541121101528921Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967124167101124167Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968897510102897652Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968897510102897652Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969239845103239920Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969546513103546645Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976117105101528921Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3720
Count of miRNA genes:825
Interacting mature miRNAs:1150
Transcripts:ENSMUST00000041418, ENSMUST00000122824, ENSMUST00000123302, ENSMUST00000123315, ENSMUST00000124487, ENSMUST00000129269, ENSMUST00000133388, ENSMUST00000138405, ENSMUST00000143150, ENSMUST00000143816, ENSMUST00000143955, ENSMUST00000144005, ENSMUST00000146312, ENSMUST00000146934, ENSMUST00000149771, ENSMUST00000155108
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC134825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC146297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC147565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC069841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z75332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000041418   ⟹   ENSMUSP00000040724
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9100,643,613 - 100,958,544 (+)Ensembl
RefSeq Acc Id: ENSMUST00000122824
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9100,848,161 - 100,855,814 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123302   ⟹   ENSMUSP00000117879
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9100,643,768 - 100,957,406 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123315
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9100,643,613 - 100,712,690 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124487   ⟹   ENSMUSP00000123595
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9100,597,798 - 100,737,996 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129269   ⟹   ENSMUSP00000116205
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9100,643,448 - 100,958,545 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133388   ⟹   ENSMUSP00000119637
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9100,643,770 - 100,776,795 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138405   ⟹   ENSMUSP00000116322
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9100,643,616 - 100,867,293 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143150
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9100,834,474 - 100,849,183 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143816
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9100,643,600 - 100,739,597 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143955   ⟹   ENSMUSP00000115460
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9100,889,608 - 100,951,680 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144005
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9100,643,613 - 100,712,709 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146312   ⟹   ENSMUSP00000116597
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9100,643,448 - 100,796,791 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146934   ⟹   ENSMUSP00000120974
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9100,845,050 - 100,956,834 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149771
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9100,796,704 - 100,957,416 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155108   ⟹   ENSMUSP00000118952
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9100,643,636 - 100,957,399 (+)Ensembl
RefSeq Acc Id: ENSMUST00000191345
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9100,955,769 - 100,959,375 (+)Ensembl
RefSeq Acc Id: NM_001357264   ⟹   NP_001344193
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399100,525,501 - 100,840,597 (+)NCBI
GRCm389100,643,448 - 100,958,544 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357265   ⟹   NP_001344194
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399100,525,501 - 100,840,597 (+)NCBI
GRCm389100,643,448 - 100,958,544 (+)NCBI
Sequence:
RefSeq Acc Id: NM_009282   ⟹   NP_033308
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399100,525,501 - 100,840,597 (+)NCBI
GRCm389100,643,448 - 100,958,544 (+)NCBI
MGSCv379100,544,042 - 100,858,963 (+)RGD
Celera9100,181,961 - 100,493,069 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006510923   ⟹   XP_006510986
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399100,525,666 - 100,840,123 (+)NCBI
GRCm389100,636,995 - 100,958,544 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006510924   ⟹   XP_006510987
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399100,479,762 - 100,840,123 (+)NCBI
GRCm389100,597,709 - 100,958,544 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006510925   ⟹   XP_006510988
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399100,525,501 - 100,840,597 (+)NCBI
GRCm389100,643,448 - 100,958,544 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011242692   ⟹   XP_011240994
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399100,525,501 - 100,785,155 (+)NCBI
GRCm389100,643,448 - 100,903,102 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244172   ⟹   XP_030100032
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399100,584,227 - 100,840,123 (+)NCBI
GRCm389100,703,218 - 100,958,544 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244173   ⟹   XP_030100033
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399100,516,957 - 100,840,123 (+)NCBI
GRCm389100,643,575 - 100,958,544 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154767   ⟹   XP_036010660
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399100,525,666 - 100,840,123 (+)NCBI
RefSeq Acc Id: XM_036154768   ⟹   XP_036010661
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399100,525,649 - 100,840,597 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_033308   ⟸   NM_009282
- Peptide Label: isoform 1
- UniProtKB: Q9D3E6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510987   ⟸   XM_006510924
- Peptide Label: isoform X1
- UniProtKB: Q9D3E6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510988   ⟸   XM_006510925
- Peptide Label: isoform X2
- UniProtKB: F8WHU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006510986   ⟸   XM_006510923
- Peptide Label: isoform X1
- UniProtKB: Q9D3E6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011240994   ⟸   XM_011242692
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: NP_001344194   ⟸   NM_001357265
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001344193   ⟸   NM_001357264
- Peptide Label: isoform 2
RefSeq Acc Id: XP_030100033   ⟸   XM_030244173
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030100032   ⟸   XM_030244172
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000123595   ⟸   ENSMUST00000124487
RefSeq Acc Id: ENSMUSP00000116322   ⟸   ENSMUST00000138405
RefSeq Acc Id: ENSMUSP00000115460   ⟸   ENSMUST00000143955
RefSeq Acc Id: ENSMUSP00000119637   ⟸   ENSMUST00000133388
RefSeq Acc Id: ENSMUSP00000120974   ⟸   ENSMUST00000146934
RefSeq Acc Id: ENSMUSP00000116597   ⟸   ENSMUST00000146312
RefSeq Acc Id: ENSMUSP00000116205   ⟸   ENSMUST00000129269
RefSeq Acc Id: ENSMUSP00000040724   ⟸   ENSMUST00000041418
RefSeq Acc Id: ENSMUSP00000117879   ⟸   ENSMUST00000123302
RefSeq Acc Id: ENSMUSP00000118952   ⟸   ENSMUST00000155108
RefSeq Acc Id: XP_036010661   ⟸   XM_036154768
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036010660   ⟸   XM_036154767
- Peptide Label: isoform X4
Protein Domains
SCD   STAG

Promoters
RGD ID:6845219
Promoter ID:MM_KWN:58529
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000041595,   OTTMUST00000085912,   OTTMUST00000085930,   OTTMUST00000085931,   OTTMUST00000085932,   OTTMUST00000085933,   OTTMUST00000085935,   OTTMUST00000085938,   OTTMUST00000085939,   OTTMUST00000085940,   UC009REZ.1,   UC009RFB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369100,543,116 - 100,544,147 (+)MPROMDB
RGD ID:8670590
Promoter ID:EPDNEW_M13325
Type:initiation region
Name:Stag1_1
Description:Mus musculus stromal antigen 1 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13326  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389100,643,613 - 100,643,673EPDNEW
RGD ID:8670592
Promoter ID:EPDNEW_M13326
Type:single initiation site
Name:Stag1_2
Description:Mus musculus stromal antigen 1 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13325  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389100,647,727 - 100,647,787EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1098658 AgrOrtholog
Ensembl Genes ENSMUSG00000037286 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000040724 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000115460 UniProtKB/TrEMBL
  ENSMUSP00000116205 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000116322 UniProtKB/TrEMBL
  ENSMUSP00000116597 UniProtKB/TrEMBL
  ENSMUSP00000117879 UniProtKB/TrEMBL
  ENSMUSP00000118952 UniProtKB/TrEMBL
  ENSMUSP00000119637 UniProtKB/TrEMBL
  ENSMUSP00000120974 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000123595 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000041418 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000123302 UniProtKB/TrEMBL
  ENSMUST00000124487 UniProtKB/TrEMBL
  ENSMUST00000129269 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000133388 UniProtKB/TrEMBL
  ENSMUST00000138405 UniProtKB/TrEMBL
  ENSMUST00000143955 UniProtKB/TrEMBL
  ENSMUST00000146312 UniProtKB/TrEMBL
  ENSMUST00000146934 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000155108 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cohesin_Scc3/SA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20842 UniProtKB/Swiss-Prot
MGD MGI:1098658 ENTREZGENE
NCBI Gene 20842 ENTREZGENE
PANTHER PTHR11199 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam STAG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Stag1 PhenoGen
PROSITE SCD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.42135 ENTREZGENE
UniProt D3YYD4_MOUSE UniProtKB/TrEMBL
  D3Z1T1_MOUSE UniProtKB/TrEMBL
  D6REF2_MOUSE UniProtKB/TrEMBL
  D6RH50_MOUSE UniProtKB/TrEMBL
  D6RHQ7_MOUSE UniProtKB/TrEMBL
  F6TNY1_MOUSE UniProtKB/TrEMBL
  F6XQW1_MOUSE UniProtKB/TrEMBL
  F8WHU7 ENTREZGENE, UniProtKB/TrEMBL
  Q8C3C5_MOUSE UniProtKB/TrEMBL
  Q8C818_MOUSE UniProtKB/TrEMBL
  Q8C918_MOUSE UniProtKB/TrEMBL
  Q9D3E6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary O08982 UniProtKB/Swiss-Prot
  Q6P5D1 UniProtKB/Swiss-Prot