Cdyl2 (chromodomain Y-like 2) - Rat Genome Database

Name: Cdyl2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Cdyl2 (chromodomain Y-like 2) Rattus norvegicus

Analyze

Symbol:

Cdyl2

Name:

chromodomain Y-like 2

RGD ID:

1309548

Description:

Predicted to enable methylated histone binding activity and transcription corepressor activity. Predicted to be involved in negative regulation of DNA-templated transcription. Predicted to be active in nucleus. Orthologous to human CDYL2 (chromodomain Y like 2); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

chromodomain protein, Y chromosome-like 2; chromodomain protein, Y-like 2; chromodomain Y-like protein 2; LOC292044

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDYL2 (chromodomain Y like 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Cdyl2 (chromodomain protein, Y chromosome-like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cdyl2 (chromodomain Y like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDYL2 (chromodomain Y like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CDYL2 (chromodomain Y like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cdyl2 (chromodomain Y like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDYL2 (chromodomain Y like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDYL2 (chromodomain Y like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdyl2 (chromodomain Y like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CDYL2 (chromodomain Y like 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cdyl2 (chromodomain protein, Y chromosome-like 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	DCI1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ECI1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	B0272.4	Alliance	DIOPT (Ensembl Compara\|OrthoFinder)
Drosophila melanogaster (fruit fly):	CG14787	Alliance	DIOPT (Ensembl Compara\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	cdyl2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	61,500,702 - 61,691,746 (-)	NCBI		GRCr8
mRatBN7.2	19	44,591,734 - 44,783,258 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	44,597,459 - 44,783,022 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	51,411,640 - 51,603,076 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	52,064,666 - 52,256,095 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	54,308,855 - 54,500,293 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	49,087,131 - 49,222,528 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	49,093,355 - 49,198,073 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	59,882,525 - 60,017,444 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	46,465,399 - 46,470,246 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	46,414,023 - 46,475,072 (+)	NCBI
Celera	19	43,886,414 - 43,952,957 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

giant axonal neuropathy 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (EXP)

3-Chloro-4-(dichloromethyl)-5-hydroxy-2(5H)-furanone (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

folic acid (ISO)

manganese(II) chloride (EXP)

methcathinone (ISO)

methimazole (EXP)

methoxychlor (EXP)

Monobutylphthalate (EXP)

N-methyl-4-phenylpyridinium (EXP)

paracetamol (EXP)

pentanal (ISO)

potassium chromate (ISO)

propanal (ISO)

silver atom (ISO)

silver(0) (ISO)

sulfadimethoxine (EXP)

testosterone (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

triptonide (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of DNA-templated transcription (IEA)

Cellular Component

nucleus (IBA,ISO)

Molecular Function

methylated histone binding (ISO)

protein binding (ISO)

transcription corepressor activity (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:18450745	PMID:21536231

Genomics

Comparative Map Data

Cdyl2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	61,500,702 - 61,691,746 (-)	NCBI		GRCr8
mRatBN7.2	19	44,591,734 - 44,783,258 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	44,597,459 - 44,783,022 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	51,411,640 - 51,603,076 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	52,064,666 - 52,256,095 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	54,308,855 - 54,500,293 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	49,087,131 - 49,222,528 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	49,093,355 - 49,198,073 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	59,882,525 - 60,017,444 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	46,465,399 - 46,470,246 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	46,414,023 - 46,475,072 (+)	NCBI
Celera	19	43,886,414 - 43,952,957 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

CDYL2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	80,597,907 - 80,805,037 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	80,597,907 - 80,804,598 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	80,631,804 - 80,838,495 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	79,195,176 - 79,395,676 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	79,195,178 - 79,395,676	NCBI
Celera	16	64,936,574 - 65,136,540 (-)	NCBI		Celera
Cytogenetic Map	16	q23.2	NCBI
HuRef	16	66,394,243 - 66,500,889 (-)	NCBI		HuRef
CHM1_1	16	82,048,855 - 82,249,535 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	86,659,589 - 86,866,895 (-)	NCBI		T2T-CHM13v2.0

Cdyl2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	117,295,462 - 117,459,730 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	117,301,139 - 117,459,730 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	116,568,723 - 116,732,991 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	116,574,400 - 116,732,991 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	119,098,300 - 119,256,891 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	119,460,467 - 119,618,821 (-)	NCBI		MGSCv36	mm8
Celera	8	120,792,913 - 120,952,148 (-)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	63.15	NCBI

Cdyl2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955522	3,409,054 - 3,571,178 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955522	3,403,542 - 3,458,029 (-)	NCBI	ChiLan1.0	ChiLan1.0

CDYL2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	90,341,503 - 90,554,577 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	96,260,834 - 96,473,884 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	61,196,716 - 61,409,662 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	80,624,971 - 80,712,898 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	80,627,731 - 80,837,797 (-)	Ensembl	panpan1.1		panPan2

CDYL2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	71,080,757 - 71,133,585 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	71,045,643 - 71,127,112 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	70,888,163 - 71,083,451 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	71,244,270 - 71,438,459 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	71,279,049 - 71,436,339 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	71,186,747 - 71,381,332 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	71,022,247 - 71,217,831 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	71,499,544 - 71,694,611 (+)	NCBI		UU_Cfam_GSD_1.0

Cdyl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	31,203,130 - 31,257,999 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	28,336,879 - 28,385,951 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	28,333,471 - 28,386,643 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDYL2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	7,420,790 - 7,604,947 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	7,420,477 - 7,707,446 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	7,678,937 - 7,697,301 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDYL2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	66,055,202 - 66,207,508 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	66,061,656 - 66,262,904 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	9,566,412 - 9,774,768 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdyl2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	6,711,203 - 6,760,431 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	6,593,962 - 6,765,340 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cdyl2
1549 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	453
Count of miRNA genes:	226
Interacting mature miRNAs:	278
Transcripts:	ENSRNOT00000068440
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9589102	Slep13	Serum leptin concentration QTL 13	4.63	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	19	569374	45569374	Rat
8694186	Bw152	Body weight QTL 152	3.34	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	569374	45569374	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2187927	46708701	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	2316121	47316121	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	3204777	48204777	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	15455860	57337602	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	15605023	46559041	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	15630201	57337602	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	17154433	57337602	Rat
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	20483575	57337602	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	29322490	57337602	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum insulin level (CMO:0000358)	19	33838214	55283146	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	33838214	55283146	Rat
5135224	Leukc1	Leukocyte quantity QTL 1			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	19	44340214	55283277	Rat

Markers in Region

D19Rat64

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	44,267,255 - 44,267,492 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	48,760,492 - 48,760,726	NCBI	Rnor6.0
Rnor_5.0	19	59,561,436 - 59,561,670	UniSTS	Rnor5.0
RGSC_v3.4	19	46,434,967 - 46,435,202	RGD	RGSC3.4
RGSC_v3.4	19	46,434,968 - 46,435,202	UniSTS	RGSC3.4
RGSC_v3.1	19	46,439,849 - 46,440,083	RGD
Celera	19	43,563,565 - 43,563,799	UniSTS
RH 3.4 Map	19	591.4	RGD
RH 3.4 Map	19	591.4	UniSTS
RH 2.0 Map	19	612.7	RGD
SHRSP x BN Map	19	38.0498	RGD
Cytogenetic Map	19	q12	UniSTS

RH135103

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	44,597,639 - 44,597,824 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	49,093,036 - 49,093,220	NCBI	Rnor6.0
Rnor_5.0	19	59,888,424 - 59,888,608	UniSTS	Rnor5.0
RGSC_v3.4	19	46,469,881 - 46,470,065	UniSTS	RGSC3.4
Celera	19	43,886,595 - 43,886,779	UniSTS
RH 3.4 Map	19	594.6	UniSTS
Cytogenetic Map	19	q12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			3		9				14		7	8
Low	3	43	52	39	10	39	8	11	60	35	34	3	8
Below cutoff			2	2		2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000068440 ⟹ ENSRNOP00000058951

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	44,597,459 - 44,709,503 (-)	Ensembl
Rnor_6.0 Ensembl	19	49,093,355 - 49,198,073 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117818 ⟹ ENSRNOP00000086896

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	44,597,512 - 44,783,022 (-)	Ensembl

RefSeq Acc Id:

NM_001106189 ⟹ NP_001099659

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	61,500,702 - 61,691,746 (-)	NCBI
mRatBN7.2	19	44,591,734 - 44,782,786 (-)	NCBI
Rnor_6.0	19	49,092,855 - 49,159,228 (-)	NCBI
Rnor_5.0	19	59,882,525 - 60,017,444 (-)	NCBI
RGSC_v3.4	19	46,465,399 - 46,470,246 (+)	RGD
Celera	19	43,886,414 - 43,952,957 (-)	RGD

Sequence:

show sequence

GTTGAAAGGATTGTGGACAAGAGGAAGAACAAGAAGGGGAAATGGGAATATCTTATCCGATGGA
AAGGCTACGGCAGCACCGAGGACACGTGGGAGCCGGAGCATCACCTCCTGCACTGTGAGGAGTT
TATTGATGAGTTCAACGGGCTTCACTTGCCCAAGGATAAGAAGGTGAAGTCAGGGAAGCAGGCC
GGAGCCTCCAAGCTCCTTCGCGATGCCCGCAGTCTGCCAGTGGAAAGACTCTCCCATCGACCAC
TGGAACCCGGGAAGAGCAAATCAACTTCCCACAAGCGGAAGCGCGTCAACTCTCCCCTGTCCAG
ATCCAAGAAGGGGTCTTCAGGAAAGGCTCCAGACAGGGCCACCAAGACCGTGTCCTATAGGACT
ACCCCCAGTGGCTTGCAAATCATGCCCCTGAAGAAGGCTCAGAATGGCTTGGAGAATGGAGATG
CTGGCTCAGAGAAGGATGAATCACACTTTGGAAACGGGTCCCATCAGCCAGATTTGGAGTTGAA
TGACCAGCTTGGAGAGCAGGAGACCAGTGATTGCGACGGGACCCACTCTGCACTGGTGGAGAAT
GGAATTGGCTCTGCTCTGACCAACGGAGGCCTAAACCTGCACAGCCCCGTGAAGAGGAAGCTGG
AGACGGAGAAGGACTATGTCTTTGACAAAAGGCTCAGGTACAGCGTCCGCCAGAATGAAAGCAA
CTGTCGGTTTCGTGACATCGTGGTGCGGAAGGAAGAGGGCTTCACACACATTCTTCTATCCAGC
CAGACTTCGGATAACAATGCACTGACTCCTGAGATCATGAAGGAAGTCCGGCGAGCGCTGTGCA
ATGCGGCCACAGACGACAGTAAGCTGCTGCTTCTCAGTGCTGTGGGCAGCGTATTCTGCAGCGG
CCTAGACTATTCCTACCTGATCGGCCGTCTGTCCAGCGACCGGAGGAAGGAGAGCACGCGGATC
GCAGAAGCCATCAGGGACTTTGTGAAGGCCTTTATCCAGTTTAAGAAGCCCATCGTGGTTGCCA
TTAATGGGCCAGCATTGGGCCTGGGAGCCTCCATTCTACCCCTCTGTGACATCGTATGGGCCAG
TGAGAAGGCCTGGTTTCAGACACCATACGCAACTATCCGACTCACCCCGGCTGGCTGTTCCTCC
TACACCTTCCCCCAGATCCTGGGTGTGGCGCTGGCCAATGAAATGCTGTTCTGTGGGCGGAAAC
TCACTGCCCAAGAGGCATGTAGCCGGGGCCTTGTGTCGCAGGTCTTCTGGCCCACGACTTTCAG
CCAAGAGGTCATGCTGCGGGTGAAGGAGATGGCGTCTTGCAGTGCTGTGGTTTTAGAGGACTCC
AAATGCCTGGTCCGAAGCTTCCTGAAGTCAGTACTGGAAGACGTGAACGAGAAGGAGTGTCTCA
TGCTGAAGCAGCTCTGGAGTTCTTCCAAAGGCCTGGACTCCCTGTTCAGCTACCTACAGGACAA
AATATATGAAGTTTGAAGGGCCCCAGCTCACCTGCCCCATTGCTAAAGGGTCTCTGACTTCCAG
CCGGGCCCTGTGTTTCTACCATCGGAGCCCAGGGTCCACCCTAGCCAAGAGTTTGTCACGGTGT
GTCTTTACACCTACGGTTGTATCCATTCCTCGTGCCCTTCGGTTGTTCCTCATTGGTTTGATTT
TGTGTAAAGGTGGGAAACGTAGCACCCTTGGCCTCCCCATGTCCCTGTCCCAGCCAGCCATAGA
ACCTTCCAGGGATCCATCTTCCCAGTGCTCCGCCAGGCACTGTCTGTTGACCTTTCCCTGCACT
AGCCAAAAGGCTCCTACCATGGTCCAGAAGAGGAAGACCAACCTCCCTCATCCTCCCAACTCAG
GCTGTGTCTACACAGTGCCTCCAACCTGGAGGAGATGAGGCCATCACAGTTCTCTGGTTATGTG
ATCTGGGACCAGGGGACAATATCTTAGGGAATTCACAGACCAACAAGCGTGTGGCAAGCACTCG
ACTACATAGGCCTGGCTTCAATCTTCTCTCCAATGCAACTCGGCGTGACTCTTAGGGCTTGGTC
TTAAAACCCAACTGAGTGATTTACAAACCCAGATAATTGTACATTTTAGAAATGTTTTGTTAAA
TATATATTTTTAAAACAACGTAAGTGGAAATTCTGATAATTTATGTGTATTATATGTAAAGCTA
GTTTTGC

hide sequence

RefSeq Acc Id:

XM_017601237 ⟹ XP_017456726

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	61,500,702 - 61,640,652 (-)	NCBI
mRatBN7.2	19	44,591,734 - 44,714,100 (-)	NCBI
Rnor_6.0	19	49,087,131 - 49,200,397 (-)	NCBI

Sequence:

show sequence

GCCCTCATGCTTGCGCAGCAAGCACTTTATTGACTGAGTTCTGTCCCCCAGACTCCCACTCAGT
TCTTTAAACATGGCTTTCTGTAGATATTTGTAAAACAGTTGTTTGTCAGTCTTTGTTAAGTTTG
GTATTCAGACCCTCTCTGCCAGAGTCTTAGCAACTCTTAAAACCCAGGCATGTTTATTACAAAT
TCACATTTCTTCTGCATGCCTCAAACCTTTGGTTCAAAATTGTGCATTCTAGATAATATACTGT
CTGTCTGTCTATCTGCTCTATAATTACTATATATTATACTATAATATACTACATATTATATACT
ATATGCGGTCATTCTCGGATTCTCTGTCTCTGGGCTTGCTGCTTTGTTTGGTCACTTGCTAATT
TCTTTAGTGAGGTGGGTAAGACAGAAAAAAGTGTTATTGGCTTTGTTCATGAAGTGTTATGTAC
TACCCTACAGTGTAGGTGTTCTGGTGTCTCTACTTAGCTTCTCTTCCCTCTTTTCTTTACTCCC
TTCTCCTCCAACCCCCCTCCCCCCACCACAGGTTTTATACTTCTTTCTTTTAAGAGTAACTGAT
CAAGTCTGATTTGAGTTCCCCATATTTTTGTGGCTCTGGCCTCCTCTGTTTTTTGTATCGCTTC
TGTATTATATCTTGGCTTCCTAATAATCCCCTTATGGTCAACACAAGCTGCCGGTTGGTCAACA
GTTATACTTATCCCCCTTTGGGTAGTTAGATTTTCACTGTTTACCATTGAATTTTGTTGTGTTG
GGGACTAGAGTCGGTGCAGTTTTAACCTAGTGTTTGATCATATAATGGGTTGCCGCCCTGTAAT
ATCCTTCGTGGTGTTGTGTTGTGATCTTAAGGGGGAAAGGGCTTACTTTGGCTCACAGTTCCAG
GATACAGTCTGTCATGGCAGCAGGAGGGTGACACAGCTGGTTGCATTGTGTCCCCAGTCTGGAA
GCAGAGCCCGATGAATGCTGGGTACTCAGCTCACTGTCTTCTTTTTAATCCAGTTCTGAACCCA
AGCCCAGGGAATGGCTCCATTCATATTTAGGTTGGGTCTTTCCGTCTCAATTACCCTAATCTAG
ATACTCCCTCATGGGTACACATGGAGGCTTCCCTCCTATGAGATTCTAGATCCCTGTCAAACGA
TGATCAATATTTATCATAACTTGAGTCAGTAAGGCCCCCACCTCTGCAGACACCCTCTCCTCCA
AGTGTGTAGAAAGGGAGAAATTTCAACTCTTCTCCAGGTCTGCCTCTTGGTGGGTACCACCTGA
CACATATATCTAAGCTTCTGGATTCTCAGGGATAAGAATGTTCTAGTGCTGTCTTCTTCCTTGT
TATTGGTTGGCTCTCTCTCATAGACTTACTTATGACTGCCCTGCTTCTGTGGGTGTGACCACTA
GTTTCATGGAGCTTCTGGTCCCTGTGTAACTGCCCAGCCATCAGGTCTCCTTCGTTTTCAATAG
TGACCGTCAGAGTGATCCTTTCTGCACCCCTATTCCAAATAAAGGCCTCTTTCAGTTTGCAAAG
AATGCTTGCGTCACTGCACCAAGTCCAGGAGTTAGGGACAGAGAAGCTCATGTCTCCTAGAGTG
GCACCCTCATTCTGTGCATGCATCCTGGGGACAGGATGTCCCTTTGTCTTCTGAGCTTATCCCC
CTGCATGCAGTGTCTGTAGCACAGGCAATCATGGGTGGGAGAAGGGATTAAAGTCCCAGTGGTC
TGTGCCCTTGTGAGTCTGGGCCCATGAATCAGCTGGGCTACAGACAGAATCTTTAGTTTCTTAC
CTGGACCCACTCACTATTCTGTCACTCATTTTCTGCTCCAGCTTTGGGGCAGTGGTAATGAGTC
TTCAATGACCTCCTCTTATAGAACAGAACTGTAGTTGTAGACAAGGAGTCAGGAAGAAAGAGAA
CCCCTTTCTCTTTGGTCATGGCACCCAGCGTTGGGCTTCTGTAGTAGAGCTGGACTGGGTGATG
AGGCACACCATGGGTCGTATGCCACTGTTACTGTCAAGGCCACTCGATGCTATGTCATATGTGT
TTCTTTGTTTTGATGTGGCAGTTGGGACACTTCCAGTGGCTGAGGGAAGTGAGGGTGTGGCAGA
GGGGCTGAGAATGTAGTAAGGAGTCTTTGGGTGAGGGAACCTGGAACAACAAGGCAGTCCCTGC
CTACCTGCAGGATTTTCCTATATGAGGTGAAGTGTCACAGGGCTTTGGTTGAAACTTGTGAGTT
AAGTGCTGTCGAGCTGCACAGTCTGCTCTGAAGAAGCCAGAGCTCAGAGGCCATGGCTGGCTCA
CCCAAAAACCCAATATGTAGAATGTGTAGGGTAGCACACTTCATGTCAAGTTGTCATGACGCCC
TAGCCTTATTTGGGTCATAATGCTAGTTTTTCATTGGGTCATAATGCTAGTTTTTCATTGGGTC
ATAATGCTAGTTTTTCGTTGGGTCATAATGCTAGTTTTCCAGGCTTTCTTCATTTCTGGTGTTC
CCTGGTGTTGAGGCTCAGCAGATACTATGGAGACTTTGGACATGCCTGGTGTGCTGATCATGGT
TAGATTTGGCTGTGGACTAGGAAGAGGAGAACGGAGAGGAGGAAGGGGAAGAGGAGGAAGGGGA
GGAAGAGGAGGAAGAGGAAGAGGAGATACAAGGAGCCACATCCATTTTCTTCATGTCATATCAA
GGGTTGAAAGGATTGTGGACAAGAGGAAGAACAAGAAGGGGAAATGGGAATATCTTATCCGATG
GAAAGGCTACGGCAGCACCGAGGACACGTGGGAGCCGGAGCATCACCTCCTGCACTGTGAGGAG
TTTATTGATGAGTTCAACGGGCTTCACTTGCCCAAGGATAAGAAGGTGAAGTCAGGGAAGCAGG
CCGGAGCCTCCAAGCTCCTTCGCGATGCCCGCAGTCTGCCAGTGGAAAGACTCTCCCATCGACC
ACTGGAACCCGGGAAGAGCAAATCAACTTCCCACAAGCGGAAGCGCGTCAACTCTCCCCTGTCC
AGATCCAAGAAGGGGTCTTCAGGAAAGGCTCCAGACAGGGCCACCAAGACCGTGTCCTATAGGA
CTACCCCCAGTGGCTTGCAAATCATGCCCCTGAAGAAGGCTCAGAATGGCTTGGAGAATGGAGA
TGCTGGCTCAGAGAAGGATGAATCACACTTTGGAAACGGGTCCCATCAGCCAGATTTGGAGTTG
AATGACCAGCTTGGAGAGCAGGAGACCAGTGATTGCGACGGGACCCACTCTGCACTGGTGGAGA
ATGGAATTGGCTCTGCTCTGACCAACGGAGGCCTAAACCTGCACAGCCCCGTGAAGAGGAAGCT
GGAGACGGAGAAGGACTATGTCTTTGACAAAAGGCTCAGGTACAGCGTCCGCCAGAATGAAAGC
AACTGTCGGTTTCGTGACATCGTGGTGCGGAAGGAAGAGGGCTTCACACACATTCTTCTATCCA
GCCAGACTTCGGATAACAATGCACTGACTCCTGAGATCATGAAGGAAGTCCGGCGAGCGCTGTG
CAATGCGGCCACAGACGACAGTAAGCTGCTGCTTCTCAGTGCTGTGGGCAGCGTATTCTGCAGC
GGCCTAGACTATTCCTACCTGATCGGCCGTCTGTCCAGCGACCGGAGGAAGGAGAGCACGCGGA
TCGCAGAAGCCATCAGGGACTTTGTGAAGGCCTTTATCCAGTTTAAGAAGCCCATCGTGGTTGC
CATTAATGGGCCAGCATTGGGCCTGGGAGCCTCCATTCTACCCCTCTGTGACATCGTATGGGCC
AGTGAGAAGGCCTGGTTTCAGACACCATACGCAACTATCCGACTCACCCCGGCTGGCTGTTCCT
CCTACACCTTCCCCCAGATCCTGGGTGTGGCGCTGGCCAATGAAATGCTGTTCTGTGGGCGGAA
ACTCACTGCCCAAGAGGCATGTAGCCGGGGCCTTGTGTCGCAGGTCTTCTGGCCCACGACTTTC
AGCCAAGAGGTCATGCTGCGGGTGAAGGAGATGGCGTCTTGCAGTGCTGTGGTTTTAGAGGACT
CCAAATGCCTGGTCCGAAGCTTCCTGAAGTCAGTACTGGAAGACGTGAACGAGAAGGAGTGTCT
CATGCTGAAGCAGCTCTGGAGTTCTTCCAAAGGCCTGGACTCCCTGTTCAGCTACCTACAGGAC
AAAATATATGAAGTTTGAAGGGCCCCAGCTCACCTGCCCCATTGCTAAAGGGTCTCTGACTTCC
AGCCGGGCCCTGTGTTTCTACCATCGGAGCCCAGGGTCCACCCTAGCCAAGAGTTTGTCACGGT
GTGTCTTTACACCTACGGTTGTATCCATTCCTCGTGCCCTTCGGTTGTTCCTCATTGGTTTGAT
TTTGTGTAAAGGTGGGAAACGTAGCACCCTTGGCCTCCCCATGTCCCTGTCCCAGCCAGCCATA
GAACCTTCCAGGGATCCATCTTCCCAGTGCTCCGCCAGGCACTGTCTGTTGACCTTTCCCTGCA
CTAGCCAAAAGGCTCCTACCATGGTCCAGAAGAGGAAGACCAACCTCCCTCATCCTCCCAACTC
AGGCTGTGTCTACACAGTGCCTCCAACCTGGAGGAGATGAGGCCATCACAGTTCTCTGGTTATG
TGATCTGGGACCAGGGGACAATATCTTAGGGAATTCACAGACCAACAAGCGTGTGGCAAGCACT
CGACTACATAGGCCTGGCTTCAATCTTCTCTCCAATGCAACTCGGCGTGACTCTTAGGGCTTGG
TCTTAAAACCCAACTGAGTGATTTACAAACCCAGATAATTGTACATTTTAGAAATGTTTTGTTA
AATATATATTTTTAAAACAACGTAAGTGGAAATTCTGATAATTTATGTGTATTATATGTAAAGC
TAGTTTTGCAAAAAAGAAAAAAGAAACATGACTTACTAGGAAATTTTTTTCTTTATTCGGGTTT
ATTTTATTTATTTATTTTTGTTGTTTATATATTATGGAGTCTATTGTTCACACAGATCTTATTT
TCATACCACCCTGGACCAAATACTATCCGAGGTGCACGCCGTTTGGTGCGTTCTCACGATGAGC
CACGTGGAAAGAAAAGGAGATAAGAACGGATTAAAGCCTGTTTCAGACTCTCTGCGTGCTGCCC
TTAGGGCAGAATGCCAGTTCTCTAATCTTTGAGGACAAGTCATGGTGGCATTTTTTTCTTTCAG
TCGCTATCATTCAGGAGAAATGGAGGACTCTTGTTAGACCCATCCCTAAGTGTGTGATGTTCAG
AAGGGATGGGAGCAGCTTATCTTTAGGATAATACATTGCCTAGGGTGAGACATTTTTTTGCTCT
GGGATAAATAAGTGAACTTGGATTTCCAAGACCTTTCCTTCCATATGGACGTTAATGTCTTGGT
TGGCCTTCTGGGGGTGTTGAGGAAGAGAACTCAGTCTCAAGAGTTTCTTCACGGTCCAAACCTG
AACACTAAATCTTTAATTTTTTTTTTAAGCTGGGAGAAAACAAAAACAAGGATGGCTCTAACTA
GCAGGGCGGTCTCCTTGCCTCACTGGCCCTAGCCTACTGGAGGCCTCCAATAGCTGTCTTTATG
TCACCCAATCAAAGTCCCTGATTCTGCACTGAGGGAGAGTTTCAGTTTGAGTTGGTGAAGAGAC
AGGAAATGGAAGGGACTCCTTGTGATTGGGGCCTTAAACCTATTTGCTCAGAGAAAAATTAGAC
CATGACGGAGGCTGGAGGGGCCAGGCTAGCTCTAGATGGGTTACAACCTTGACTGTTGTTCTTT
TTCTTCAATTCCCTCTGAGTTTCCAGCCTTTCTTAACCCTTCCTTAGGGACAATGGGGTACAGC
ACAGAGTCGGCCCAGTTTGTGGAGGGGGTGGGGAAGGTAGGCTGAAAAAGTAGAGATGGTTGTT
TGCCTGCCCTTGAGTGGGAATAGCTGCCCCCCAGTCACAAGTAGAAGGGATGCCTGGCCCTAAG
CTTTGAATGACCCAGGTGGCTGGATGCTTGCATGATGATTAGTGAAGTGACCCTCTAAATAGTG
GCTCCCACATGCACTTGGCCTTGAATGACCTTGCTTGGCTCTGTAGAAATGCTTTAGAGCTCAG
AAGGGTTTGAGAAGAGAAGACTTTTACTTCTCTATTCACCACCAGCCTGTCCCGCCTTGGCCAT
GAGGGGCCTGAGAATATAGTCACCTTGGTTGTGTTTGGTCACAGGAAAATGGAATGGAAGCTCG
TAGCTCCCTGGAGTCCCTATAATACTGTAGGAACTGTGGACTAGGGTATAGAGAATTAACGCAG
GAGAACGCCTGGGTCTGCTGTTGTCCCTTCTCCATTGGATGTACACTTCCTGCAAACCCTTATA
ACAGCTTTTGTTCTTTAGGTGTCTGAGAAACTCTTAACTGACTGCTGCTTCTGTAGGAGCCCCC
TCCCCCAACCCCATGCTTTCTGATTAGCTTCTGATCGAGCCAGTTTTGTCCACGGGGAAGCAAG
TTGTCAGGATTCTTTCTAGAAACATTACAGGATGCATCTTTGACTCCCATTGACACAACCAGAG
ATGCTTTCTCTTTAGGTGTTGGACGAGCGCCAAACTTGCGAACGTGCAGAGAACCCGTGATGAC
TTGGGTAGATAGACACGGACTATTTCTAAGGTAGAATTCACACTGCTTGTTTTTTTAAAGACTG
TGTTTTATCTGTTTGAAGGGGGTAGCTCTGTCCCATGGGCACAAGTCTTTTTAGTCAACCTACT
GGGCCGGCTGAATCATGAGAGTTGGTATTTTCAGGCTGGCTGTTGGGATAGCGTCGGGTTGAAA
TCCAGATGACCTACATAACAGTATATTGAGCTGGGATGGAAAATACCCATTGAGTGGTTGTGTC
CAGGTTATCCTAAAAGCTTTATTGAGGTAGGGTGCTGGCTCCCATCTTTTACTTTGTACCCCAG
TGTCCCCTCTCCTCCCATGAGGCCCTTCTGCTTGTCCCATTACTCTCTGTTCCTTTCCGCATAC
CCCTTTCCTAGACTCGGAGTAAGTCTTTGCGGAATTGTAGATGGTCTTTGGAGAGACAGCTATA
GGCAAGAGGTGGAGACTTCCTCTTCTGAGTCAAGGTTTCCTTTAGCAAGCCAATTGGAACTCTC
CTCTGTTTACCAAAACCTTGGTGGTGGCAACTCCCAGCAATCTCATAGGACACTGCTGAGGTTA
ACTGCTCCAATCCCAGGCGACTTTTGAAGCGTTATGGTTAAGATGGCCAGACCCCCTCAGCACT
GGGAAGCCACCCCCTACTGTGGTGTTCTTTTCAGGTGACCCTTTACTGCATAGAGGCAAAATCT
GAAGGAAACTCGTATGCTGAGAAGGCAGGGACTACTTGTAGGAAATAGGGAACTGACAGAAAAA
TCTTGTTCTGTGGCGTAGACCAAACTGGGAACTGTCCTCTGAGAAGCGGGAAAAGACGACTTCT
CTGTGTGAAGTTCAACCTGGGGATAGGAAAATAATGACAGGAGACTTTGGACAACACAATTATA
TCTCCGAATCCCTCTTTTACAAACAGCCTTTACTGAACGCTGAATTGTCTCCCTCATTACCAAC
TGCTGGTTTCAAGAGCCTCTTAAATGGTTTGTTAAAAAAAGTTGGTTTTTTTTTAATTTGGAAT
TTAGTCCTATCCACACACTTTTAAAACCTAGTTTCTGTAGAAGGTTTTTGTTTTGTTTTTTATA
AAAATAAAAAATAGAGACATCCACAAATCTTCCTATGGGGATATTTTGAAGGAAGGCTTGCTTC
TCTCCTGTGTTTCTGTATTAAGATACTTAGATCTGTTGTATATATGAGTCAAGATGCCCTCACT
AATATACACAGTATTTAAGACTCCAAATGAGATTTCTTAAGTATTTTATTTTATTCTCTGTACA
TGGTTTTGTAGAATCTTGGAAATTTACACTTTGGTTTTGTAGATATATATCTTTGGGGAGGGAG
GTTGTCTTGCATGTGTGTTTTTTGTTGTAGCTAAGTGTTACATTGTCCTTTCTGCAGGCTTTGG
TTGAAATGCTTAATAGACTTTAATACAGTAAATATATTTTCAGAATATAAACTTTTATATTTCT
GTGGTAAATTAGGACATGCGTTTTAGGCAATCTTTTCCATTAATATCACTTCTTCCTTCTGGGG
GAAAATATATATCTCATATTGGTTTGGTGCCAATGTTTTGTTTTTTTGGTTCTTAATTTTCTTT
TATTTAAAATCGGGTAGTCTTACATTTTTAAGAAATCAAGTCAACTTTCTTTTCCTCTAGAAGT
CATTGCGTTTGAAATCTAATTTGAAAATGTATTGAATCTGCGAATAAGCCTTACCATTAGGTTC
AATAATCCTTCTGACCTTTCAAAACTACACGTGTAGCTCAAGATCTCCCCTTCCCCCCCCCCAT
AAATTCTCACTGTGTGGCAGTTGATGGAGTTCAGAAAAGAGCCTTAAGCTTGTTGCAAAATAAT
AATAATAATAATAAATTAATTAAAAGGGTAATACGGGTTGTTTCCTCCATGTAAGCCATGTTGG
TGGGCTCAGTGCAGTCTGTAAGTCATTCATGGCTAATCTGAAGGGAGTAGTGGAAGGAGCTGAT
GGCGCCAGGGACCAGGTGGCATCCTCGGCGAATGTCTTTGGCCATAAGAGTGGACCAAGGGTAG
GTTTTCTAAGCCACTTTCATTCTAGTAGTATGGTTGAGGGATGGTGACAGGGAGGGCTGCTAAA
TCATCATTTGTTCTCAACAAGTGACATTTCCTGCTCCTGACCCTGTTGGGGACCCCAGGGTAGC
TAAAGTCCGTGCTCTCTGAGAGATGTTAGCAAAGTTTACATTAAGAGTCTTGCTGTGTAGACAA
TCTGGAGTCAGTTTTTGTTCCATCTTCAACATCGCCATGTGTCCTTGGTGTTTCTATGAGGAAG
TGTGTGTCAAGCTATACTAGAGTGGAATGTAGCTGGATGAAGGTATTGTAGCTACAGAGCGGGA
ACAGTAAGTGATAGAGTATGTCCAGGGCTGTTTCGATGGTGCAAAAATCTCAGAAATAGACTTA
GGTCTTAAAAATCAAGTTATAATGTCTTTTGGCCAGTGGTACTCCAGCCACCACCAGCTGATTC
TCCTTACCCACCCTTGAAATGGGAACTTGCATTTAGGGCTATGTGACTTAGCATGAGGTCCATC
TCTACAAAGTGTTCAAAGTCACTTTCTCAGCCTTTAAGGATTAAGATTGGCATGTATGTCAGTC
AGAAGACATGATGTCTAGAGTTAAGCTTCAGCCTTATATCTCTGGGTTTGTCTCACCTCTTTAT
CCCAACATCTAGTCTGATGCAGGAGCTTGTCAACTCTGAGATGCTCAGAGGGTGATTGTTGACT
CCAGGATGTTCAGAGGGTGATTGTTAACTCTGGGAAGTTCAGGGGGGTGATTGTTGACTTTGGG
ATGTTCAGAGGGTGATTGTTGACTCCAGGAAGTTTAGAGGATGATTGTGAGTTCTCCATCTAGT
CTTGAACTTGCCATCGTGCCATTAGTCCCAGCTTGAAGTTATTTTTCTAATGTCTACATTAACA
AGATTATGAAAAATAATTGCCTTTCATAAAACCAAGGACCAAAGATTCCATTATTCCAACCAAG
CTTGAGTTTCATAAGCTGCAGGCACATCTGGGTTCAGATGTGTGAGCTTCACAGCACAGAGGAA
CCCTTGGTTCCTCCTACCACCAAACCAATGCTCCCTGACTAGCCATGCAGAGAAGTTGAATATC
TCTTGAAAAGGCTCTGAAGGAAGAGTTTCTGAGATGGGAACTTAGTATCTCAGGTGGGTGTTTC
CGCTGTATAGCCTCAAGTTTTCATTTATCCCATTATAAAGTGGAGGTCAGAGATTCCCCTTCGG
GTCTCTAACCATGGTCAACTCTTACATTTGCATGTGGGCCTCCATCTGTTTTGCAGTTAGGAGT
TAGGTCTTCAGTGGTACATCCTGTGACTGCCAGATGTCCATCTCTTTAGTTCCTCATCGAGCCA
TCCCACTTCCTGCTTGGTAGAACAAGAATGTTCCCGGTGCCCCCACCAGGGGTTTCCCCATTTT
CAACCTCACTCACGATGATGCCATTGGCCTCTAACTAATCCAGAAGACTAAATGTTAAAGAAGG
GGTATTCTACTGGTAAGGCTTATTACCCAACTTCTGATACTAAAGCCAGCTACCAAAAACATAT
CCAGCTCACCCTGGGAGTGTTTGGGTTGGATCATGGACGTAGCAAACACACCAAAATCCATGAA
TACCTTTGCAGGTTAGGTTGCTCATTTTCTTTTTGCTAGATTTTCACAGGAAGGTCTTTAGTTC
TGGATCCTTGTAAGTATGAGTCCTCCATAGCATCATATGCAGGTATAGCTGGTCCATTCTCCAC
ACTGTAAATATTTTTCCCAAACTGGGTGCAGTACTGAGGGTAATAATCTTCTGATTTATCAAAT
GCTGACTGTCTGGAGCAAATCGTCCGCTCTTTGTGAATGGTCCTGTAACGTATATGAACATATT
TCTGGGTGCCTTAGAAGTTGTATTTTTCATGTGTGCTAATATGCAGTATTTATACATTGTGAGA
AGCTGCTTTGAATAAAAAGATTGAAACTTTGTCTCCA

hide sequence

RefSeq Acc Id:

XM_017601238 ⟹ XP_017456727

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	61,500,702 - 61,642,054 (-)	NCBI
mRatBN7.2	19	44,591,734 - 44,734,449 (-)	NCBI
Rnor_6.0	19	49,087,131 - 49,222,528 (-)	NCBI

Sequence:

show sequence

GTTCTCAGTTCAGTGGTTGGCTGCGAGCGTCCATCTGTGTATTTGTAAATGTTCTTTATGACAA
ACTTTGTACTGCACAAAGAGAGAACATACAATTAGCCTCTTGTATGACATCCCCATCTTTGATG
GATGTGTTTGTAAGAAGGTGAGCTATCTTGGAACCCTTTTCTTGATCTCTTAGCTAGATACCCT
AAGCATAGAGTTAAAAGTTAGGGGCATCAGGGCCATTTCAAGGTCAAAGATCAAAAATTGATAT
GGAGTTGGCAGTCTAGCTCAGTGGTGAAGTGCTTTCCTAGCATGCTCATAGCCCTGAGATTCAT
GTTCAAGGCCCAACACTGCAAAGGAAAAAGAAACTGGGGATGGAGATGGGGACAGGTAGGAGTG
CAGAGAATAAACGTAATGAGTCCGTTTCCCTAATGTTACATTCTCCCTGTACTTGGTTTGTATA
AACCAAGTTACACAGACTCCAGCTTGGCGTATCTCCGTAAATGTTAAATGGTAGAGCCTCTGGT
GCTATATCTGACTGGCTTCCCTTTGTACCTGATCAGCAGGCTGGCGTCTCCAGCTAGCGTGAAG
GGCAGTTAAACTTGACTTTTCCATGTGCCACAGGCTGCATGCTGTGCTGAGGGCTGGGGTCCTA
GGGCTCCCTGGGCCCTGCTTTCAAAGGATTCCTGCTGAAGTAGAGATCAATGAACACAGTGTAT
GGGTCTGGGCATGTGGCGTAAAGAATCAGGAGAGGTTTGTGCTTTCCCTGTCTGATCAAAGTCT
CCAGGTGTAAAATAGGGCTTCTCCATCCGCAGGAGTAGGGAAGGTTCCAGTAACAGGGTAGCGA
GGAGGGTTGGAGACACCTGAGTGTGCTCAGGAGATGTGCCCTGGTCTTCAAGTCTGAGAGGTGA
AGGCTCCTGATTCTATATTCAGGAAGAGTCTTTGGCAATGGTGCTTGTACTAAGTCCTTCCTGC
AGTGTGCACTTCTCTGGCCTCAGATATTACGAGGGAAGGACACAGTCCTGGTGCTAGAAGGAAT
GTTCTAGAAGACAAATGACCAAACAACGTGGCCAATGGCTGCAAGCATCCAGCGAACGTTTTCG
TATCATCAAGCAGATTTTAAAATCCTTCCCCTTCCCCTCGAAACTAGGGTGTTGTTCAGATGCC
GAGAGAGTTAAGTCCATACCCCAGGATGTAAAATTGAGTTGTCAAGCCTAGGTCTGAACTCAGA
TCCCTCTATAACAGCGAATGCCACTTTAACGAGGGGTTTTGGGGGTGGGGGTGGGGCTGGAATG
CACATAAGGAGGATTGTGGACCTTCCCCCAATTATCTTAAATCCAGCCTGTTTGCTGTTTGGTC
GCTTTCCTTTTGGGGCACTGAGAGATTCTCCGGTGCTTGTGGTGGCTTGAATAAGAGCGGCCCC
CGTAGACTCCTAGTTGAATGCTTAGGGAGTGGCATTGGGACAGTCATTGTGATCCAGTTGGAGG
ATGTGTCTCACTGGAGATGGCTTTGAGGTTTCGAATGCCCAGGTGGCCCTATCTCTTTCCCTAC
CGCATATGGATTCAGATGTAGAGCTCTCAGCTCATTCTCCAGCACCATGTCTGCTGGTGTCCTG
CCACGCCGCCTACCATGACAATAACGGACTAAACCTCTGAATCTGTGAGCTTCGGAGCCTCAGA
AATGCTCTCCTTTATAAGGGGTTTCGTGGTCGTGGTGTCTTTGTAACTAGGACAATGCTATATG
AAAATGGAAGGTGTGGTAATGAATACTGCCCTGCAATGATGTGATTCTTTCCTGGTGTGACTGG
AGGCTCCTACCCGGGCTGCCTGGCCACGTATTGTTCTGTCACGGTTACTTAGCCTCCTTCTTTA
CGTTCTTGGGGCTCCTCTCAACCATCTTTGGAACTCAGAACACTTGGGACATTCCAGAATTCTT
GAGAGGATAGGGGGAAAACTGCCTAGAAACCATGTTTATAGTCTTAACTGCGGAAGAAACCAAG
AGTCACCACCGGCCCTGGTGCCACATGGAGAGAGATCACGGCGCAAGAGATTGTTTTCACCCCA
CAAGGCTGATCTCTACTGAGCCCACATGGCCTGGGACTATTGAAAAGTCACTTCTCCCCAGAGC
AGTAGGGTTGGATAATTTGGTGACTATTTTTACGCTCTTGGTTCCTAATTCCACTCAAGATGGT
ACAATGGTGTGATGCCTACTCTTGATTGCCAACTTCATCACATCTGGAATTAACTGAAACCCAA
AGGACTGGGTACACCTGTGAGGGTTTTTATAATTGGGGAAGGAAGCTGGCTCTGTCCTTGCCTG
CTTCCTCTCACTCTTGCTTGCAAGCCTTTAGGCGAATGCTGAAGACCAGCTGAAACACCTACCC
TTTTGGACTGAACATCTACTGGGTTCTTGGACCTTTGGTTGGTTGAAAGGATTGTGGACAAGAG
GAAGAACAAGAAGGGGAAATGGGAATATCTTATCCGATGGAAAGGCTACGGCAGCACCGAGGAC
ACGTGGGAGCCGGAGCATCACCTCCTGCACTGTGAGGAGTTTATTGATGAGTTCAACGGGCTTC
ACTTGCCCAAGGATAAGAAGGTGAAGTCAGGGAAGCAGGCCGGAGCCTCCAAGCTCCTTCGCGA
TGCCCGCAGTCTGCCAGTGGAAAGACTCTCCCATCGACCACTGGAACCCGGGAAGAGCAAATCA
ACTTCCCACAAGCGGAAGCGCGTCAACTCTCCCCTGTCCAGATCCAAGAAGGGGTCTTCAGGAA
AGGCTCCAGACAGGGCCACCAAGACCGTGTCCTATAGGACTACCCCCAGTGGCTTGCAAATCAT
GCCCCTGAAGAAGGCTCAGAATGGCTTGGAGAATGGAGATGCTGGCTCAGAGAAGGATGAATCA
CACTTTGGAAACGGGTCCCATCAGCCAGATTTGGAGTTGAATGACCAGCTTGGAGAGCAGGAGA
CCAGTGATTGCGACGGGACCCACTCTGCACTGGTGGAGAATGGAATTGGCTCTGCTCTGACCAA
CGGAGGCCTAAACCTGCACAGCCCCGTGAAGAGGAAGCTGGAGACGGAGAAGGACTATGTCTTT
GACAAAAGGCTCAGGTACAGCGTCCGCCAGAATGAAAGCAACTGTCGGTTTCGTGACATCGTGG
TGCGGAAGGAAGAGGGCTTCACACACATTCTTCTATCCAGCCAGACTTCGGATAACAATGCACT
GACTCCTGAGATCATGAAGGAAGTCCGGCGAGCGCTGTGCAATGCGGCCACAGACGACAGTAAG
CTGCTGCTTCTCAGTGCTGTGGGCAGCGTATTCTGCAGCGGCCTAGACTATTCCTACCTGATCG
GCCGTCTGTCCAGCGACCGGAGGAAGGAGAGCACGCGGATCGCAGAAGCCATCAGGGACTTTGT
GAAGGCCTTTATCCAGTTTAAGAAGCCCATCGTGGTTGCCATTAATGGGCCAGCATTGGGCCTG
GGAGCCTCCATTCTACCCCTCTGTGACATCGTATGGGCCAGTGAGAAGGCCTGGTTTCAGACAC
CATACGCAACTATCCGACTCACCCCGGCTGGCTGTTCCTCCTACACCTTCCCCCAGATCCTGGG
TGTGGCGCTGGCCAATGAAATGCTGTTCTGTGGGCGGAAACTCACTGCCCAAGAGGCATGTAGC
CGGGGCCTTGTGTCGCAGGTCTTCTGGCCCACGACTTTCAGCCAAGAGGTCATGCTGCGGGTGA
AGGAGATGGCGTCTTGCAGTGCTGTGGTTTTAGAGGACTCCAAATGCCTGGTCCGAAGCTTCCT
GAAGTCAGTACTGGAAGACGTGAACGAGAAGGAGTGTCTCATGCTGAAGCAGCTCTGGAGTTCT
TCCAAAGGCCTGGACTCCCTGTTCAGCTACCTACAGGACAAAATATATGAAGTTTGAAGGGCCC
CAGCTCACCTGCCCCATTGCTAAAGGGTCTCTGACTTCCAGCCGGGCCCTGTGTTTCTACCATC
GGAGCCCAGGGTCCACCCTAGCCAAGAGTTTGTCACGGTGTGTCTTTACACCTACGGTTGTATC
CATTCCTCGTGCCCTTCGGTTGTTCCTCATTGGTTTGATTTTGTGTAAAGGTGGGAAACGTAGC
ACCCTTGGCCTCCCCATGTCCCTGTCCCAGCCAGCCATAGAACCTTCCAGGGATCCATCTTCCC
AGTGCTCCGCCAGGCACTGTCTGTTGACCTTTCCCTGCACTAGCCAAAAGGCTCCTACCATGGT
CCAGAAGAGGAAGACCAACCTCCCTCATCCTCCCAACTCAGGCTGTGTCTACACAGTGCCTCCA
ACCTGGAGGAGATGAGGCCATCACAGTTCTCTGGTTATGTGATCTGGGACCAGGGGACAATATC
TTAGGGAATTCACAGACCAACAAGCGTGTGGCAAGCACTCGACTACATAGGCCTGGCTTCAATC
TTCTCTCCAATGCAACTCGGCGTGACTCTTAGGGCTTGGTCTTAAAACCCAACTGAGTGATTTA
CAAACCCAGATAATTGTACATTTTAGAAATGTTTTGTTAAATATATATTTTTAAAACAACGTAA
GTGGAAATTCTGATAATTTATGTGTATTATATGTAAAGCTAGTTTTGCAAAAAAGAAAAAAGAA
ACATGACTTACTAGGAAATTTTTTTCTTTATTCGGGTTTATTTTATTTATTTATTTTTGTTGTT
TATATATTATGGAGTCTATTGTTCACACAGATCTTATTTTCATACCACCCTGGACCAAATACTA
TCCGAGGTGCACGCCGTTTGGTGCGTTCTCACGATGAGCCACGTGGAAAGAAAAGGAGATAAGA
ACGGATTAAAGCCTGTTTCAGACTCTCTGCGTGCTGCCCTTAGGGCAGAATGCCAGTTCTCTAA
TCTTTGAGGACAAGTCATGGTGGCATTTTTTTCTTTCAGTCGCTATCATTCAGGAGAAATGGAG
GACTCTTGTTAGACCCATCCCTAAGTGTGTGATGTTCAGAAGGGATGGGAGCAGCTTATCTTTA
GGATAATACATTGCCTAGGGTGAGACATTTTTTTGCTCTGGGATAAATAAGTGAACTTGGATTT
CCAAGACCTTTCCTTCCATATGGACGTTAATGTCTTGGTTGGCCTTCTGGGGGTGTTGAGGAAG
AGAACTCAGTCTCAAGAGTTTCTTCACGGTCCAAACCTGAACACTAAATCTTTAATTTTTTTTT
TAAGCTGGGAGAAAACAAAAACAAGGATGGCTCTAACTAGCAGGGCGGTCTCCTTGCCTCACTG
GCCCTAGCCTACTGGAGGCCTCCAATAGCTGTCTTTATGTCACCCAATCAAAGTCCCTGATTCT
GCACTGAGGGAGAGTTTCAGTTTGAGTTGGTGAAGAGACAGGAAATGGAAGGGACTCCTTGTGA
TTGGGGCCTTAAACCTATTTGCTCAGAGAAAAATTAGACCATGACGGAGGCTGGAGGGGCCAGG
CTAGCTCTAGATGGGTTACAACCTTGACTGTTGTTCTTTTTCTTCAATTCCCTCTGAGTTTCCA
GCCTTTCTTAACCCTTCCTTAGGGACAATGGGGTACAGCACAGAGTCGGCCCAGTTTGTGGAGG
GGGTGGGGAAGGTAGGCTGAAAAAGTAGAGATGGTTGTTTGCCTGCCCTTGAGTGGGAATAGCT
GCCCCCCAGTCACAAGTAGAAGGGATGCCTGGCCCTAAGCTTTGAATGACCCAGGTGGCTGGAT
GCTTGCATGATGATTAGTGAAGTGACCCTCTAAATAGTGGCTCCCACATGCACTTGGCCTTGAA
TGACCTTGCTTGGCTCTGTAGAAATGCTTTAGAGCTCAGAAGGGTTTGAGAAGAGAAGACTTTT
ACTTCTCTATTCACCACCAGCCTGTCCCGCCTTGGCCATGAGGGGCCTGAGAATATAGTCACCT
TGGTTGTGTTTGGTCACAGGAAAATGGAATGGAAGCTCGTAGCTCCCTGGAGTCCCTATAATAC
TGTAGGAACTGTGGACTAGGGTATAGAGAATTAACGCAGGAGAACGCCTGGGTCTGCTGTTGTC
CCTTCTCCATTGGATGTACACTTCCTGCAAACCCTTATAACAGCTTTTGTTCTTTAGGTGTCTG
AGAAACTCTTAACTGACTGCTGCTTCTGTAGGAGCCCCCTCCCCCAACCCCATGCTTTCTGATT
AGCTTCTGATCGAGCCAGTTTTGTCCACGGGGAAGCAAGTTGTCAGGATTCTTTCTAGAAACAT
TACAGGATGCATCTTTGACTCCCATTGACACAACCAGAGATGCTTTCTCTTTAGGTGTTGGACG
AGCGCCAAACTTGCGAACGTGCAGAGAACCCGTGATGACTTGGGTAGATAGACACGGACTATTT
CTAAGGTAGAATTCACACTGCTTGTTTTTTTAAAGACTGTGTTTTATCTGTTTGAAGGGGGTAG
CTCTGTCCCATGGGCACAAGTCTTTTTAGTCAACCTACTGGGCCGGCTGAATCATGAGAGTTGG
TATTTTCAGGCTGGCTGTTGGGATAGCGTCGGGTTGAAATCCAGATGACCTACATAACAGTATA
TTGAGCTGGGATGGAAAATACCCATTGAGTGGTTGTGTCCAGGTTATCCTAAAAGCTTTATTGA
GGTAGGGTGCTGGCTCCCATCTTTTACTTTGTACCCCAGTGTCCCCTCTCCTCCCATGAGGCCC
TTCTGCTTGTCCCATTACTCTCTGTTCCTTTCCGCATACCCCTTTCCTAGACTCGGAGTAAGTC
TTTGCGGAATTGTAGATGGTCTTTGGAGAGACAGCTATAGGCAAGAGGTGGAGACTTCCTCTTC
TGAGTCAAGGTTTCCTTTAGCAAGCCAATTGGAACTCTCCTCTGTTTACCAAAACCTTGGTGGT
GGCAACTCCCAGCAATCTCATAGGACACTGCTGAGGTTAACTGCTCCAATCCCAGGCGACTTTT
GAAGCGTTATGGTTAAGATGGCCAGACCCCCTCAGCACTGGGAAGCCACCCCCTACTGTGGTGT
TCTTTTCAGGTGACCCTTTACTGCATAGAGGCAAAATCTGAAGGAAACTCGTATGCTGAGAAGG
CAGGGACTACTTGTAGGAAATAGGGAACTGACAGAAAAATCTTGTTCTGTGGCGTAGACCAAAC
TGGGAACTGTCCTCTGAGAAGCGGGAAAAGACGACTTCTCTGTGTGAAGTTCAACCTGGGGATA
GGAAAATAATGACAGGAGACTTTGGACAACACAATTATATCTCCGAATCCCTCTTTTACAAACA
GCCTTTACTGAACGCTGAATTGTCTCCCTCATTACCAACTGCTGGTTTCAAGAGCCTCTTAAAT
GGTTTGTTAAAAAAAGTTGGTTTTTTTTTAATTTGGAATTTAGTCCTATCCACACACTTTTAAA
ACCTAGTTTCTGTAGAAGGTTTTTGTTTTGTTTTTTATAAAAATAAAAAATAGAGACATCCACA
AATCTTCCTATGGGGATATTTTGAAGGAAGGCTTGCTTCTCTCCTGTGTTTCTGTATTAAGATA
CTTAGATCTGTTGTATATATGAGTCAAGATGCCCTCACTAATATACACAGTATTTAAGACTCCA
AATGAGATTTCTTAAGTATTTTATTTTATTCTCTGTACATGGTTTTGTAGAATCTTGGAAATTT
ACACTTTGGTTTTGTAGATATATATCTTTGGGGAGGGAGGTTGTCTTGCATGTGTGTTTTTTGT
TGTAGCTAAGTGTTACATTGTCCTTTCTGCAGGCTTTGGTTGAAATGCTTAATAGACTTTAATA
CAGTAAATATATTTTCAGAATATAAACTTTTATATTTCTGTGGTAAATTAGGACATGCGTTTTA
GGCAATCTTTTCCATTAATATCACTTCTTCCTTCTGGGGGAAAATATATATCTCATATTGGTTT
GGTGCCAATGTTTTGTTTTTTTGGTTCTTAATTTTCTTTTATTTAAAATCGGGTAGTCTTACAT
TTTTAAGAAATCAAGTCAACTTTCTTTTCCTCTAGAAGTCATTGCGTTTGAAATCTAATTTGAA
AATGTATTGAATCTGCGAATAAGCCTTACCATTAGGTTCAATAATCCTTCTGACCTTTCAAAAC
TACACGTGTAGCTCAAGATCTCCCCTTCCCCCCCCCCATAAATTCTCACTGTGTGGCAGTTGAT
GGAGTTCAGAAAAGAGCCTTAAGCTTGTTGCAAAATAATAATAATAATAATAAATTAATTAAAA
GGGTAATACGGGTTGTTTCCTCCATGTAAGCCATGTTGGTGGGCTCAGTGCAGTCTGTAAGTCA
TTCATGGCTAATCTGAAGGGAGTAGTGGAAGGAGCTGATGGCGCCAGGGACCAGGTGGCATCCT
CGGCGAATGTCTTTGGCCATAAGAGTGGACCAAGGGTAGGTTTTCTAAGCCACTTTCATTCTAG
TAGTATGGTTGAGGGATGGTGACAGGGAGGGCTGCTAAATCATCATTTGTTCTCAACAAGTGAC
ATTTCCTGCTCCTGACCCTGTTGGGGACCCCAGGGTAGCTAAAGTCCGTGCTCTCTGAGAGATG
TTAGCAAAGTTTACATTAAGAGTCTTGCTGTGTAGACAATCTGGAGTCAGTTTTTGTTCCATCT
TCAACATCGCCATGTGTCCTTGGTGTTTCTATGAGGAAGTGTGTGTCAAGCTATACTAGAGTGG
AATGTAGCTGGATGAAGGTATTGTAGCTACAGAGCGGGAACAGTAAGTGATAGAGTATGTCCAG
GGCTGTTTCGATGGTGCAAAAATCTCAGAAATAGACTTAGGTCTTAAAAATCAAGTTATAATGT
CTTTTGGCCAGTGGTACTCCAGCCACCACCAGCTGATTCTCCTTACCCACCCTTGAAATGGGAA
CTTGCATTTAGGGCTATGTGACTTAGCATGAGGTCCATCTCTACAAAGTGTTCAAAGTCACTTT
CTCAGCCTTTAAGGATTAAGATTGGCATGTATGTCAGTCAGAAGACATGATGTCTAGAGTTAAG
CTTCAGCCTTATATCTCTGGGTTTGTCTCACCTCTTTATCCCAACATCTAGTCTGATGCAGGAG
CTTGTCAACTCTGAGATGCTCAGAGGGTGATTGTTGACTCCAGGATGTTCAGAGGGTGATTGTT
AACTCTGGGAAGTTCAGGGGGGTGATTGTTGACTTTGGGATGTTCAGAGGGTGATTGTTGACTC
CAGGAAGTTTAGAGGATGATTGTGAGTTCTCCATCTAGTCTTGAACTTGCCATCGTGCCATTAG
TCCCAGCTTGAAGTTATTTTTCTAATGTCTACATTAACAAGATTATGAAAAATAATTGCCTTTC
ATAAAACCAAGGACCAAAGATTCCATTATTCCAACCAAGCTTGAGTTTCATAAGCTGCAGGCAC
ATCTGGGTTCAGATGTGTGAGCTTCACAGCACAGAGGAACCCTTGGTTCCTCCTACCACCAAAC
CAATGCTCCCTGACTAGCCATGCAGAGAAGTTGAATATCTCTTGAAAAGGCTCTGAAGGAAGAG
TTTCTGAGATGGGAACTTAGTATCTCAGGTGGGTGTTTCCGCTGTATAGCCTCAAGTTTTCATT
TATCCCATTATAAAGTGGAGGTCAGAGATTCCCCTTCGGGTCTCTAACCATGGTCAACTCTTAC
ATTTGCATGTGGGCCTCCATCTGTTTTGCAGTTAGGAGTTAGGTCTTCAGTGGTACATCCTGTG
ACTGCCAGATGTCCATCTCTTTAGTTCCTCATCGAGCCATCCCACTTCCTGCTTGGTAGAACAA
GAATGTTCCCGGTGCCCCCACCAGGGGTTTCCCCATTTTCAACCTCACTCACGATGATGCCATT
GGCCTCTAACTAATCCAGAAGACTAAATGTTAAAGAAGGGGTATTCTACTGGTAAGGCTTATTA
CCCAACTTCTGATACTAAAGCCAGCTACCAAAAACATATCCAGCTCACCCTGGGAGTGTTTGGG
TTGGATCATGGACGTAGCAAACACACCAAAATCCATGAATACCTTTGCAGGTTAGGTTGCTCAT
TTTCTTTTTGCTAGATTTTCACAGGAAGGTCTTTAGTTCTGGATCCTTGTAAGTATGAGTCCTC
CATAGCATCATATGCAGGTATAGCTGGTCCATTCTCCACACTGTAAATATTTTTCCCAAACTGG
GTGCAGTACTGAGGGTAATAATCTTCTGATTTATCAAATGCTGACTGTCTGGAGCAAATCGTCC
GCTCTTTGTGAATGGTCCTGTAACGTATATGAACATATTTCTGGGTGCCTTAGAAGTTGTATTT
TTCATGTGTGCTAATATGCAGTATTTATACATTGTGAGAAGCTGCTTTGAATAAAAAGATTGAA
ACTTTGTCTCCA

hide sequence

RefSeq Acc Id:

XM_039097639 ⟹ XP_038953567

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	61,500,702 - 61,691,670 (-)	NCBI
mRatBN7.2	19	44,591,734 - 44,783,258 (-)	NCBI

RefSeq Acc Id:

XM_039097640 ⟹ XP_038953568

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	61,500,702 - 61,611,955 (-)	NCBI
mRatBN7.2	19	44,591,734 - 44,703,005 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099659	(Get FASTA)	NCBI Sequence Viewer
	XP_017456726	(Get FASTA)	NCBI Sequence Viewer
	XP_017456727	(Get FASTA)	NCBI Sequence Viewer
	XP_038953567	(Get FASTA)	NCBI Sequence Viewer
	XP_038953568	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL92634	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000058951
	ENSRNOP00000058951.3
	ENSRNOP00000086896
	ENSRNOP00000086896.1

RefSeq Acc Id:

NP_001099659 ⟸ NM_001106189

- UniProtKB:

A0A8I6GEJ2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPLKKAQNGLENGDAGSEKDESHFGNGSHQPDLELNDQLGEQETSDCDGTHSALVENGIGSALT
NGGLNLHSPVKRKLETEKDYVFDKRLRYSVRQNESNCRFRDIVVRKEEGFTHILLSSQTSDNNA
LTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAIRDF
VKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQIL
GVALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEDSKCLVRSF
LKSVLEDVNEKECLMLKQLWSSSKGLDSLFSYLQDKIYEV

hide sequence

RefSeq Acc Id:	XP_017456727 ⟸ XM_017601238
- Peptide Label:	isoform X2
- UniProtKB:	A6IZF6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPLKKAQNGLENGDAGSEKDESHFGNGSHQPDLELNDQLGEQETSDCDGTHSALVENGIGSALT NGGLNLHSPVKRKLETEKDYVFDKRLRYSVRQNESNCRFRDIVVRKEEGFTHILLSSQTSDNNA LTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAIRDF VKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQIL GVALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEDSKCLVRSF LKSVLEDVNEKECLMLKQLWSSSKGLDSLFSYLQDKIYEV hide sequence

RefSeq Acc Id:	XP_017456726 ⟸ XM_017601237
- Peptide Label:	isoform X1
- UniProtKB:	F1LT42 (UniProtKB/TrEMBL)
- Sequence:	show sequence METLDMPGVLIMVRFGCGLGRGERRGGRGRGGRGGRGGRGRGDTRSHIHFLHVISRVERIVDKR KNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHLPKDKKVKSGKQAGASKLLRD ARSLPVERLSHRPLEPGKSKSTSHKRKRVNSPLSRSKKGSSGKAPDRATKTVSYRTTPSGLQIM PLKKAQNGLENGDAGSEKDESHFGNGSHQPDLELNDQLGEQETSDCDGTHSALVENGIGSALTN GGLNLHSPVKRKLETEKDYVFDKRLRYSVRQNESNCRFRDIVVRKEEGFTHILLSSQTSDNNAL TPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAIRDFV KAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILG VALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEDSKCLVRSFL KSVLEDVNEKECLMLKQLWSSSKGLDSLFSYLQDKIYEV hide sequence

RefSeq Acc Id:

ENSRNOP00000058951 ⟸ ENSRNOT00000068440

RefSeq Acc Id:	XP_038953567 ⟸ XM_039097639
- Peptide Label:	isoform X2
- UniProtKB:	A6IZF6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953568 ⟸ XM_039097640
- Peptide Label:	isoform X2
- UniProtKB:	A6IZF6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000086896 ⟸ ENSRNOT00000117818

Protein Domains

Chromo

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LT42-F1-model_v2	AlphaFold	F1LT42	1-551	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309548	AgrOrtholog
BioCyc Gene	G2FUF-5565	BioCyc
Ensembl Genes	ENSRNOG00000042888	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000068440.4	UniProtKB/TrEMBL
	ENSRNOT00000117818	ENTREZGENE
	ENSRNOT00000117818.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.12.10	UniProtKB/TrEMBL
	2.40.50.40	UniProtKB/TrEMBL
InterPro	Chromo/shadow_dom	UniProtKB/TrEMBL
	Chromo_domain	UniProtKB/TrEMBL
	Chromodomain-like	UniProtKB/TrEMBL
	Chromodomain_CS	UniProtKB/TrEMBL
	ClpP/crotonase-like_dom	UniProtKB/TrEMBL
	Crontonase_C	UniProtKB/TrEMBL
	Crotonase_core_superfam	UniProtKB/TrEMBL
KEGG Report	rno:292044	UniProtKB/TrEMBL
NCBI Gene	292044	ENTREZGENE
PANTHER	CHROMODOMAIN Y-LIKE PROTEIN 2	UniProtKB/TrEMBL
	PTHR43684	UniProtKB/TrEMBL
Pfam	Chromo	UniProtKB/TrEMBL
	ECH_1	UniProtKB/TrEMBL
PhenoGen	Cdyl2	PhenoGen
PROSITE	CHROMO_1	UniProtKB/TrEMBL
	CHROMO_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000042888	RatGTEx
SMART	CHROMO	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52096	UniProtKB/TrEMBL
	SSF54160	UniProtKB/TrEMBL
UniProt	A0A8I6GEJ2	ENTREZGENE, UniProtKB/TrEMBL
	A6IZF6	ENTREZGENE, UniProtKB/TrEMBL
	F1LT42	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-07-21	Cdyl2	chromodomain Y-like 2	Cdyl2	chromodomain protein, Y-like 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-16	Cdyl2	chromodomain protein, Y-like 2	Cdyl2	chromodomain protein, Y chromosome-like 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Cdyl2	chromodomain protein, Y chromosome-like 2	Cdyl2_predicted	chromodomain protein, Y chromosome-like 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Cdyl2_predicted	chromodomain protein, Y chromosome-like 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar