Cdyl2 (chromodomain Y like 2) - Rat Genome Database
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Gene: Cdyl2 (chromodomain Y like 2) Chinchilla lanigera
Analyze
Symbol: Cdyl2
Name: chromodomain Y like 2
RGD ID: 8845424
Description: ENCODES a protein that exhibits methylated histone binding (ortholog); ASSOCIATED WITH giant axonal neuropathy 1 (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: chromodomain protein, Y-like 2; chromodomain Y-like 2; chromodomain Y-like protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555223,409,054 - 3,571,178 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555223,403,542 - 3,458,029 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (ISO)

Molecular Function

References


Genomics

Comparative Map Data
Cdyl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555223,409,054 - 3,571,178 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555223,403,542 - 3,458,029 (-)NCBIChiLan1.0ChiLan1.0
CDYL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1680,597,907 - 80,804,598 (-)EnsemblGRCh38hg38GRCh38
GRCh381680,597,899 - 80,805,043 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371680,631,804 - 80,838,495 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361679,195,176 - 79,395,676 (-)NCBINCBI36hg18NCBI36
Build 341679,195,178 - 79,395,676NCBI
Celera1664,936,574 - 65,136,540 (-)NCBI
Cytogenetic Map16q23.2NCBI
HuRef1666,394,243 - 66,500,889 (-)NCBIHuRef
CHM1_11682,042,976 - 82,249,535 (-)NCBICHM1_1
Cdyl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398117,295,462 - 117,459,730 (-)NCBIGRCm39mm39
GRCm39 Ensembl8117,301,139 - 117,459,730 (-)Ensembl
GRCm388116,568,723 - 116,732,991 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8116,574,400 - 116,732,991 (-)EnsemblGRCm38mm10GRCm38
MGSCv378119,098,300 - 119,256,891 (-)NCBIGRCm37mm9NCBIm37
MGSCv368119,460,467 - 119,618,821 (-)NCBImm8
Celera8120,792,913 - 120,952,148 (-)NCBICelera
Cytogenetic Map8E1NCBI
Cdyl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21944,591,734 - 44,783,258 (-)NCBI
Rnor_6.0 Ensembl1949,093,355 - 49,198,073 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01949,087,131 - 49,222,528 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01959,882,525 - 60,017,444 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41946,465,399 - 46,470,246 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11946,414,023 - 46,475,072 (+)NCBI
Celera1943,886,414 - 43,952,957 (-)NCBICelera
Cytogenetic Map19q12NCBI
CDYL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11680,624,971 - 80,712,898 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1680,627,731 - 80,837,797 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01661,196,716 - 61,409,662 (-)NCBIMhudiblu_PPA_v0panPan3
CDYL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl571,045,643 - 71,127,112 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1571,080,757 - 71,133,585 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cdyl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647528,333,471 - 28,386,643 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDYL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl67,420,763 - 7,604,985 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.167,420,477 - 7,707,446 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.267,678,937 - 7,697,301 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDYL2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1566,055,202 - 66,207,508 (-)NCBI
ChlSab1.1 Ensembl566,061,656 - 66,262,904 (-)Ensembl
Cdyl2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247466,593,962 - 6,765,340 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000000250   ⟹   ENSCLAP00000000223
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555223,409,054 - 3,571,178 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000000251   ⟹   ENSCLAP00000000224
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555223,409,054 - 3,458,208 (-)Ensembl
RefSeq Acc Id: XM_005409346   ⟹   XP_005409403
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555223,403,542 - 3,458,029 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005409403 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005409403   ⟸   XM_005409346
- Sequence:
RefSeq Acc Id: ENSCLAP00000000223   ⟸   ENSCLAT00000000250
RefSeq Acc Id: ENSCLAP00000000224   ⟸   ENSCLAT00000000251


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000214 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000000224 ENTREZGENE
Ensembl Transcript ENSCLAT00000000251 ENTREZGENE
NCBI Gene Cdyl2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-02-28 Cdyl2  chromodomain Y like 2    chromodomain Y-like 2  Symbol and/or name change 5135510 APPROVED
2016-07-26 Cdyl2  chromodomain Y-like 2    chromodomain protein, Y-like 2  Symbol and/or name change 5135510 APPROVED