Ap1m1 (adaptor related protein complex 1 subunit mu 1) - Rat Genome Database

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Gene: Ap1m1 (adaptor related protein complex 1 subunit mu 1) Rattus norvegicus
Analyze
Symbol: Ap1m1
Name: adaptor related protein complex 1 subunit mu 1
RGD ID: 1307653
Description: Predicted to enable clathrin adaptor activity. Predicted to be involved in endosome to melanosome transport; melanosome organization; and vesicle-mediated transport. Predicted to be located in cytosol and intracellular membrane-bounded organelle. Predicted to be part of clathrin adaptor complex. Predicted to be active in clathrin-coated vesicle and synapse. Orthologous to human AP1M1 (adaptor related protein complex 1 subunit mu 1); PARTICIPATES IN E-cadherin signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: adapter-related protein complex 1 subunit mu-1; adaptor protein complex AP-1 mu-1 subunit; adaptor protein complex AP-1 subunit mu-1; adaptor-related protein complex 1 mu-1 subunit; adaptor-related protein complex 1 subunit mu-1; adaptor-related protein complex 1, mu 1 subunit; adaptor-related protein complex AP-1, mu subunit 1; AP-1 complex subunit mu-1; AP-mu chain family member mu1A; clathrin assembly protein complex 1 medium chain 1; clathrin assembly protein complex 1 mu-1 medium chain 1; golgi adaptor HA1/AP1 adaptin mu-1 subunit; LOC306332; MGC125095; mu-adaptin 1; mu1A-adaptin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81617,620,910 - 17,636,431 (-)NCBIGRCr8
mRatBN7.21617,586,886 - 17,602,410 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1617,584,730 - 17,602,403 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1617,652,970 - 17,668,442 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01618,784,996 - 18,800,477 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01617,705,895 - 17,721,367 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,288,354 - 19,303,818 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,288,355 - 19,303,824 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,148,665 - 19,164,129 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,009,300 - 18,024,765 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11618,009,304 - 18,025,262 (-)NCBI
Celera1617,804,251 - 17,819,715 (-)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. mu1A-adaptin-deficient mice: lethality, loss of AP-1 binding and rerouting of mannose 6-phosphate receptors. Meyer C, etal., EMBO J. 2000 May 15;19(10):2193-203.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:16641100   PMID:17604280   PMID:19056867   PMID:19841138   PMID:19946888   PMID:22958822   PMID:29476059  


Genomics

Comparative Map Data
Ap1m1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81617,620,910 - 17,636,431 (-)NCBIGRCr8
mRatBN7.21617,586,886 - 17,602,410 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1617,584,730 - 17,602,403 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1617,652,970 - 17,668,442 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01618,784,996 - 18,800,477 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01617,705,895 - 17,721,367 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,288,354 - 19,303,818 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,288,355 - 19,303,824 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,148,665 - 19,164,129 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,009,300 - 18,024,765 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11618,009,304 - 18,025,262 (-)NCBI
Celera1617,804,251 - 17,819,715 (-)NCBICelera
Cytogenetic Map16p14NCBI
AP1M1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381916,197,911 - 16,245,906 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1916,197,854 - 16,245,906 (+)EnsemblGRCh38hg38GRCh38
GRCh371916,308,722 - 16,356,717 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361916,169,731 - 16,207,151 (+)NCBINCBI36Build 36hg18NCBI36
Build 341916,169,730 - 16,207,149NCBI
Celera1916,210,670 - 16,249,248 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1915,879,295 - 15,916,784 (+)NCBIHuRef
CHM1_11916,308,224 - 16,345,640 (+)NCBICHM1_1
T2T-CHM13v2.01916,331,982 - 16,379,983 (+)NCBIT2T-CHM13v2.0
Ap1m1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,993,857 - 73,011,230 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl872,993,862 - 73,011,229 (+)EnsemblGRCm39 Ensembl
GRCm38872,240,013 - 72,257,386 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,240,018 - 72,257,385 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,764,031 - 74,781,278 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36875,169,121 - 75,186,368 (+)NCBIMGSCv36mm8
Celera876,582,726 - 76,600,156 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.92NCBI
Ap1m1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555241,345,125 - 1,360,869 (-)NCBIChiLan1.0ChiLan1.0
AP1M1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22021,067,146 - 21,104,758 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11920,073,006 - 20,110,556 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01915,685,208 - 15,722,723 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11916,665,846 - 16,703,067 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1916,671,053 - 16,703,067 (+)Ensemblpanpan1.1panPan2
AP1M1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12046,261,799 - 46,290,387 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2046,261,803 - 46,290,342 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2046,176,311 - 46,204,900 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02046,750,245 - 46,778,839 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2046,748,992 - 46,778,819 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12045,984,894 - 46,013,481 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02046,395,371 - 46,423,939 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02046,672,706 - 46,701,296 (-)NCBIUU_Cfam_GSD_1.0
Ap1m1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118204,772,898 - 204,798,221 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365964,318,452 - 4,347,392 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365964,322,032 - 4,347,392 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AP1M1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl261,355,547 - 61,386,169 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1261,356,369 - 61,386,133 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2260,988,671 - 61,018,411 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AP1M1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1614,704,940 - 14,743,627 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl614,705,089 - 14,743,702 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660744,748,482 - 4,787,790 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ap1m1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,043,785 - 1,061,329 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249081,046,728 - 1,060,591 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ap1m1
63 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:342
Count of miRNA genes:198
Interacting mature miRNAs:223
Transcripts:ENSRNOT00000019350
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16422773017696785Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161572643321034895Rat

Markers in Region
RH131952  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21617,604,016 - 17,604,221 (+)MAPPERmRatBN7.2
Rnor_6.01619,305,483 - 19,305,687NCBIRnor6.0
Rnor_5.01619,165,794 - 19,165,998UniSTSRnor5.0
RGSC_v3.41618,026,429 - 18,026,633UniSTSRGSC3.4
Celera1617,821,380 - 17,821,584UniSTS
RH 3.4 Map16178.5UniSTS
Cytogenetic Map16p14UniSTS
RH140737  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21617,586,936 - 17,587,138 (+)MAPPERmRatBN7.2
Rnor_6.01619,288,405 - 19,288,606NCBIRnor6.0
Rnor_5.01619,148,716 - 19,148,917UniSTSRnor5.0
RGSC_v3.41618,009,351 - 18,009,552UniSTSRGSC3.4
Celera1617,804,302 - 17,804,503UniSTS
Cytogenetic Map16p14UniSTS
UniSTS:225314  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21617,587,171 - 17,587,360 (+)MAPPERmRatBN7.2
Rnor_6.01619,288,640 - 19,288,828NCBIRnor6.0
Rnor_5.01619,148,951 - 19,149,139UniSTSRnor5.0
RGSC_v3.41618,009,586 - 18,009,774UniSTSRGSC3.4
Celera1617,804,537 - 17,804,725UniSTS
Cytogenetic Map16p14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 36 57 41 19 41 1 4 74 35 41 11 1
Low 7 7 7 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000019350   ⟹   ENSRNOP00000019350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1617,586,892 - 17,602,346 (-)Ensembl
Rnor_6.0 Ensembl1619,288,355 - 19,303,824 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103242   ⟹   ENSRNOP00000088493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1617,584,730 - 17,602,403 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107626   ⟹   ENSRNOP00000093218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1617,587,054 - 17,599,268 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109928   ⟹   ENSRNOP00000093622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1617,586,997 - 17,598,742 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111913   ⟹   ENSRNOP00000089947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1617,586,927 - 17,597,988 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114749   ⟹   ENSRNOP00000093546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1617,584,730 - 17,602,403 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115580   ⟹   ENSRNOP00000086711
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1617,586,927 - 17,602,403 (-)Ensembl
RefSeq Acc Id: NM_001044239   ⟹   NP_001037704
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81617,620,910 - 17,636,374 (-)NCBI
mRatBN7.21617,586,886 - 17,602,350 (-)NCBI
Rnor_6.01619,288,354 - 19,303,818 (-)NCBI
Rnor_5.01619,148,665 - 19,164,129 (-)NCBI
RGSC_v3.41618,009,300 - 18,024,765 (-)RGD
Celera1617,804,251 - 17,819,715 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039094482   ⟹   XP_038950410
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81617,620,916 - 17,636,431 (-)NCBI
mRatBN7.21617,586,892 - 17,602,410 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001037704   ⟸   NM_001044239
- UniProtKB: Q32Q06 (UniProtKB/Swiss-Prot),   A6K9P8 (UniProtKB/TrEMBL),   A0A8I6A2R3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000019350   ⟸   ENSRNOT00000019350
RefSeq Acc Id: XP_038950410   ⟸   XM_039094482
- Peptide Label: isoform X1
- UniProtKB: A0A8L2Q9M5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000093218   ⟸   ENSRNOT00000107626
RefSeq Acc Id: ENSRNOP00000089947   ⟸   ENSRNOT00000111913
RefSeq Acc Id: ENSRNOP00000086711   ⟸   ENSRNOT00000115580
RefSeq Acc Id: ENSRNOP00000093546   ⟸   ENSRNOT00000114749
RefSeq Acc Id: ENSRNOP00000093622   ⟸   ENSRNOT00000109928
RefSeq Acc Id: ENSRNOP00000088493   ⟸   ENSRNOT00000103242
Protein Domains
MHD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q32Q06-F1-model_v2 AlphaFold Q32Q06 1-423 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699988
Promoter ID:EPDNEW_R10509
Type:initiation region
Name:Ap1m1_1
Description:adaptor-related protein complex 1, mu 1 subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01619,303,842 - 19,303,902EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307653 AgrOrtholog
BioCyc Gene G2FUF-11878 BioCyc
Ensembl Genes ENSRNOG00000014454 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019350.5 UniProtKB/TrEMBL
  ENSRNOT00000103242.1 UniProtKB/TrEMBL
  ENSRNOT00000107626.1 UniProtKB/TrEMBL
  ENSRNOT00000109928.1 UniProtKB/TrEMBL
  ENSRNOT00000111913.1 UniProtKB/TrEMBL
  ENSRNOT00000114749.1 UniProtKB/TrEMBL
  ENSRNOT00000115580 ENTREZGENE
  ENSRNOT00000115580.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.450.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mu homology domain, subdomain B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7321762 IMAGE-MGC_LOAD
  IMAGE:7455976 IMAGE-MGC_LOAD
InterPro AP2_Mu_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AP_mu_sigma_su UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clathrin_mu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clathrin_mu_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Longin-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:306332 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:109478 IMAGE-MGC_LOAD
  MGC:125095 IMAGE-MGC_LOAD
NCBI Gene 306332 ENTREZGENE
PANTHER AP COMPLEX SUBUNIT MU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AP-1 COMPLEX SUBUNIT MU-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Adap_comp_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clat_adaptor_s UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ap1m1 PhenoGen
PIRSF Clathrin_mu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS CLATHRINADPT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CLAT_ADAPTOR_M_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CLAT_ADAPTOR_M_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014454 RatGTEx
Superfamily-SCOP SSF49447 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF64356 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A2R3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A6B2_RAT UniProtKB/TrEMBL
  A0A8I6AG54_RAT UniProtKB/TrEMBL
  A0A8I6AJ52_RAT UniProtKB/TrEMBL
  A0A8I6AWQ6_RAT UniProtKB/TrEMBL
  A0A8I6GHT2_RAT UniProtKB/TrEMBL
  A0A8L2Q9M5 ENTREZGENE, UniProtKB/TrEMBL
  A6K9P8 ENTREZGENE, UniProtKB/TrEMBL
  AP1M1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-03 Ap1m1  adaptor related protein complex 1 subunit mu 1  Ap1m1  adaptor-related protein complex 1, mu 1 subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Ap1m1  adaptor-related protein complex 1, mu 1 subunit  Ap1m1  adaptor-related protein complex AP-1, mu subunit 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Ap1m1  adaptor-related protein complex AP-1, mu subunit 1  Ap1m1_predicted  adaptor-related protein complex AP-1, mu subunit 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ap1m1_predicted  adaptor-related protein complex AP-1, mu subunit 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED