Ap1m1 (adaptor related protein complex 1 subunit mu 1) - Rat Genome Database

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Gene: Ap1m1 (adaptor related protein complex 1 subunit mu 1) Ictidomys tridecemlineatus
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Symbol: Ap1m1
Name: adaptor related protein complex 1 subunit mu 1
RGD ID: 12615233
Description: ENCODES a protein that exhibits clathrin adaptor activity (inferred); INVOLVED IN endosome to melanosome transport (inferred); establishment of localization in cell (inferred); intracellular protein transport (inferred); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN clathrin adaptor complex (inferred); clathrin-coated vesicle (inferred); clathrin-coated vesicle membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adaptor related protein complex 1 mu 1 subunit; AP-1 complex subunit mu-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118204,772,898 - 204,798,221 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365964,318,452 - 4,347,392 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365964,322,032 - 4,347,392 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ap1m1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118204,772,898 - 204,798,221 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365964,318,452 - 4,347,392 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365964,322,032 - 4,347,392 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AP1M1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381916,197,911 - 16,245,906 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1916,197,854 - 16,245,906 (+)EnsemblGRCh38hg38GRCh38
GRCh371916,308,722 - 16,356,717 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361916,169,731 - 16,207,151 (+)NCBINCBI36Build 36hg18NCBI36
Build 341916,169,730 - 16,207,149NCBI
Celera1916,210,670 - 16,249,248 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1915,879,295 - 15,916,784 (+)NCBIHuRef
CHM1_11916,308,224 - 16,345,640 (+)NCBICHM1_1
T2T-CHM13v2.01916,331,982 - 16,379,983 (+)NCBIT2T-CHM13v2.0
Ap1m1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,993,857 - 73,011,230 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl872,993,862 - 73,011,229 (+)EnsemblGRCm39 Ensembl
GRCm38872,240,013 - 72,257,386 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,240,018 - 72,257,385 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,764,031 - 74,781,278 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36875,169,121 - 75,186,368 (+)NCBIMGSCv36mm8
Celera876,582,726 - 76,600,156 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.92NCBI
Ap1m1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81617,620,910 - 17,636,431 (-)NCBIGRCr8
mRatBN7.21617,586,886 - 17,602,410 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1617,584,730 - 17,602,403 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1617,652,970 - 17,668,442 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01618,784,996 - 18,800,477 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01617,705,895 - 17,721,367 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,288,354 - 19,303,818 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,288,355 - 19,303,824 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,148,665 - 19,164,129 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,009,300 - 18,024,765 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11618,009,304 - 18,025,262 (-)NCBI
Celera1617,804,251 - 17,819,715 (-)NCBICelera
Cytogenetic Map16p14NCBI
Ap1m1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555241,345,125 - 1,360,869 (-)NCBIChiLan1.0ChiLan1.0
AP1M1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22021,067,146 - 21,104,758 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11920,073,006 - 20,110,556 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01915,685,208 - 15,722,723 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11916,665,846 - 16,703,067 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1916,671,053 - 16,703,067 (+)Ensemblpanpan1.1panPan2
AP1M1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12046,261,799 - 46,290,387 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2046,261,803 - 46,290,342 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2046,176,311 - 46,204,900 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02046,750,245 - 46,778,839 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2046,748,992 - 46,778,819 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12045,984,894 - 46,013,481 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02046,395,371 - 46,423,939 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02046,672,706 - 46,701,296 (-)NCBIUU_Cfam_GSD_1.0
AP1M1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl261,355,547 - 61,386,169 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1261,356,369 - 61,386,133 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2260,988,671 - 61,018,411 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AP1M1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1614,704,940 - 14,743,627 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl614,705,089 - 14,743,702 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660744,748,482 - 4,787,790 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ap1m1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,043,785 - 1,061,329 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249081,046,728 - 1,060,591 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000016291   ⟹   ENSSTOP00000014586
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365964,318,452 - 4,347,392 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000037065   ⟹   ENSSTOP00000024089
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365964,318,452 - 4,347,392 (-)Ensembl
RefSeq Acc Id: XM_005333041   ⟹   XP_005333098
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118204,772,898 - 204,798,220 (-)NCBI
SpeTri2.0NW_0049365964,322,032 - 4,347,392 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021731522   ⟹   XP_021587197
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118204,772,898 - 204,798,221 (-)NCBI
SpeTri2.0NW_0049365964,322,032 - 4,347,392 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005333098 (Get FASTA)   NCBI Sequence Viewer  
  XP_021587197 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014586.2
  ENSSTOP00000024089.1
RefSeq Acc Id: XP_005333098   ⟸   XM_005333041
- Peptide Label: isoform X2
- UniProtKB: I3MR98 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021587197   ⟸   XM_021731522
- Peptide Label: isoform X1
- UniProtKB: A0A287CS27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000014586   ⟸   ENSSTOT00000016291
RefSeq Acc Id: ENSSTOP00000024089   ⟸   ENSSTOT00000037065
Protein Domains
MHD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016287 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016291.3 UniProtKB/TrEMBL
  ENSSTOT00000037065.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.450.60 UniProtKB/TrEMBL
  Mu homology domain, subdomain B UniProtKB/TrEMBL
InterPro AP2_Mu_C_sf UniProtKB/TrEMBL
  AP_mu_sigma_su UniProtKB/TrEMBL
  Clathrin_mu UniProtKB/TrEMBL
  Clathrin_mu_CS UniProtKB/TrEMBL
  Longin-like_dom_sf UniProtKB/TrEMBL
  MHD UniProtKB/TrEMBL
NCBI Gene Ap1m1 ENTREZGENE
PANTHER AP COMPLEX SUBUNIT MU UniProtKB/TrEMBL
  AP-1 COMPLEX SUBUNIT MU-1 UniProtKB/TrEMBL
Pfam Adap_comp_sub UniProtKB/TrEMBL
  Clat_adaptor_s UniProtKB/TrEMBL
PIRSF Clathrin_mu UniProtKB/TrEMBL
PRINTS CLATHRINADPT UniProtKB/TrEMBL
PROSITE CLAT_ADAPTOR_M_1 UniProtKB/TrEMBL
  CLAT_ADAPTOR_M_2 UniProtKB/TrEMBL
  MHD UniProtKB/TrEMBL
Superfamily-SCOP SSF49447 UniProtKB/TrEMBL
  SSF64356 UniProtKB/TrEMBL
UniProt A0A287CS27 ENTREZGENE, UniProtKB/TrEMBL
  I3MR98 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 Ap1m1  adaptor related protein complex 1 subunit mu 1    adaptor related protein complex 1 mu 1 subunit  Symbol and/or name change 5135510 APPROVED