Symbol:
Snx7
Name:
sorting nexin 7
RGD ID:
1305480
Description:
Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in several processes, including endocytic recycling; macroautophagy; and positive regulation of autophagosome assembly. Predicted to be located in early endosome membrane. Predicted to be active in early endosome and phagophore assembly site. Orthologous to human SNX7 (sorting nexin 7); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,4-dinitrotoluene.
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Previously known as:
LOC108348210; LOC310815; sorting nexin-7; uncharacterized LOC108348210
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
SNX7 (sorting nexin 7) RGD
RGD
Mus musculus (house mouse):
Snx7 (sorting nexin 7) RGD
RGD
Chinchilla lanigera (long-tailed chinchilla):
Snx7 (sorting nexin 7) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
SNX7 (sorting nexin 7) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
SNX7 (sorting nexin 7) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Snx7 (sorting nexin 7) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
SNX7 (sorting nexin 7) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
SNX7 (sorting nexin 7) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Snx7 (sorting nexin 7) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Alliance orthologs 3
Homo sapiens (human):
SNX7 (sorting nexin 7)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Snx7 (sorting nexin 7)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
snx7 (sorting nexin 7)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):
SNX4
Alliance
DIOPT (Hieranoid|OMA|OrthoInspector|PANTHER)
Xenopus tropicalis (tropical clawed frog):
snx7
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB)
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 2 208,528,041 - 208,612,597 (-) NCBI GRCr8 mRatBN7.2 2 205,843,164 - 205,927,737 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 2 205,842,837 - 205,927,763 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 2 213,498,379 - 213,582,435 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 2 211,405,786 - 211,489,830 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 2 206,231,428 - 206,315,478 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 2 221,015,302 - 221,099,810 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 2 221,015,310 - 221,099,738 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 2 239,065,711 - 239,150,598 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 Rnor_5.0 2 238,076,916 - 238,096,183 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 2 214,162,589 - 214,246,543 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 2 214,125,655 - 214,209,605 (-) NCBI Celera 2 198,320,679 - 198,404,352 (-) NCBI Celera Cytogenetic Map 2 q42 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Snx7 Rat (+)-schisandrin B multiple interactions EXP 6480464 schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of SNX7 mRNA] CTD PMID:31150632 Snx7 Rat (2,4,5-trichlorophenoxy)acetic acid increases expression ISO RGD:1313531 6480464 2,4,5-Trichlorophenoxyacetic Acid results in increased expression of SNX7 mRNA CTD PMID:18579281 Snx7 Rat 1,2-dichloroethane decreases expression ISO RGD:1313531 6480464 ethylene dichloride results in decreased expression of SNX7 mRNA CTD PMID:28960355 Snx7 Rat 1,2-dimethylhydrazine multiple interactions ISO RGD:1313531 6480464 [1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of SNX7 mRNA CTD PMID:22206623 Snx7 Rat 1,2-dimethylhydrazine decreases expression ISO RGD:1313531 6480464 1,2-Dimethylhydrazine results in decreased expression of SNX7 mRNA CTD PMID:22206623 Snx7 Rat 17beta-estradiol multiple interactions EXP 6480464 [bisphenol A co-treated with Estradiol] results in increased expression of SNX7 mRNA CTD PMID:26496021 Snx7 Rat 17beta-estradiol increases expression ISO RGD:1313531 6480464 Estradiol results in increased expression of SNX7 mRNA CTD PMID:39298647 Snx7 Rat 2,3,7,8-tetrachlorodibenzodioxine increases expression ISO RGD:1313531 6480464 Tetrachlorodibenzodioxin results in increased expression of SNX7 mRNA CTD PMID:19465110 Snx7 Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO RGD:1313531 6480464 Tetrachlorodibenzodioxin affects the expression of SNX7 mRNA CTD PMID:21570461 Snx7 Rat 2,4-dinitrotoluene affects expression EXP 6480464 2,4-dinitrotoluene affects the expression of SNX7 mRNA CTD PMID:21346803 Snx7 Rat 2,6-dinitrotoluene affects expression EXP 6480464 2,6-dinitrotoluene affects the expression of SNX7 mRNA CTD PMID:21346803 Snx7 Rat 2-hydroxypropanoic acid decreases expression ISO RGD:1313530 6480464 Lactic Acid results in decreased expression of SNX7 mRNA CTD PMID:30851411 Snx7 Rat 4,4'-sulfonyldiphenol increases expression ISO RGD:1313531 6480464 bisphenol S results in increased expression of SNX7 mRNA CTD PMID:30951980|PMID:39298647 Snx7 Rat 4-hydroxyphenyl retinamide decreases expression ISO RGD:1313531 6480464 Fenretinide results in decreased expression of SNX7 mRNA CTD PMID:28973697 Snx7 Rat 6-propyl-2-thiouracil decreases expression EXP 6480464 Propylthiouracil results in decreased expression of SNX7 mRNA CTD PMID:36843608 Snx7 Rat aldrin increases expression ISO RGD:1313531 6480464 Aldrin results in increased expression of SNX7 mRNA CTD PMID:18579281 Snx7 Rat antimycin A decreases expression ISO RGD:1313530 6480464 Antimycin A results in decreased expression of SNX7 mRNA CTD PMID:33512557 Snx7 Rat Aroclor 1254 decreases expression ISO RGD:1313531 6480464 Chlorodiphenyl (54% Chlorine) results in decreased expression of SNX7 mRNA CTD PMID:23650126 Snx7 Rat arsenite(3-) multiple interactions ISO RGD:1313530 6480464 arsenite promotes the reaction [G3BP1 protein binds to SNX7 mRNA] CTD PMID:32406909 Snx7 Rat benzo[a]pyrene increases expression ISO RGD:1313531 6480464 Benzo(a)pyrene results in increased expression of SNX7 mRNA CTD PMID:22228805 Snx7 Rat benzo[a]pyrene decreases methylation ISO RGD:1313530 6480464 Benzo(a)pyrene results in decreased methylation of SNX7 promoter CTD PMID:27901495 Snx7 Rat bis(2-ethylhexyl) phthalate increases expression ISO RGD:1313531 6480464 Diethylhexyl Phthalate results in increased expression of SNX7 mRNA CTD PMID:19850644 Snx7 Rat bis(2-ethylhexyl) phthalate decreases expression ISO RGD:1313531 6480464 Diethylhexyl Phthalate results in decreased expression of SNX7 mRNA CTD PMID:34319233 Snx7 Rat bis(2-ethylhexyl) phthalate multiple interactions ISO RGD:1313531 6480464 PPARA protein promotes the reaction [Diethylhexyl Phthalate results in increased expression of SNX7 mRNA] CTD PMID:19850644 Snx7 Rat bisphenol A multiple interactions EXP 6480464 [bisphenol A co-treated with Estradiol] results in increased expression of SNX7 mRNA CTD PMID:26496021 Snx7 Rat bisphenol A increases expression EXP 6480464 bisphenol A results in increased expression of SNX7 mRNA CTD PMID:25181051 Snx7 Rat bisphenol F increases expression ISO RGD:1313531 6480464 bisphenol F results in increased expression of SNX7 mRNA CTD PMID:30951980|PMID:38685157 Snx7 Rat cadmium dichloride decreases expression ISO RGD:1313530 6480464 Cadmium Chloride results in decreased expression of SNX7 mRNA CTD PMID:38568856 Snx7 Rat captan increases expression ISO RGD:1313531 6480464 Captan results in increased expression of SNX7 mRNA CTD PMID:31558096 Snx7 Rat carbon nanotube increases expression ISO RGD:1313531 6480464 Nanotubes, Carbon analog results in increased expression of SNX7 mRNA; Nanotubes, Carbon results in increased more ... CTD PMID:25554681|PMID:25620056 Snx7 Rat CGP 52608 multiple interactions ISO RGD:1313530 6480464 CGP 52608 promotes the reaction [RORA protein binds to SNX7 gene] CTD PMID:28238834 Snx7 Rat chlorpyrifos increases expression ISO RGD:1313531 6480464 Chlorpyrifos results in increased expression of SNX7 mRNA CTD PMID:37019170 Snx7 Rat cobalt dichloride increases expression EXP 6480464 cobaltous chloride results in increased expression of SNX7 mRNA CTD PMID:24386269 Snx7 Rat copper(II) sulfate decreases expression ISO RGD:1313530 6480464 Copper Sulfate results in decreased expression of SNX7 mRNA CTD PMID:19549813 Snx7 Rat copper(II) sulfate increases expression ISO RGD:1313531 6480464 Copper Sulfate results in increased expression of SNX7 mRNA CTD PMID:18579281 Snx7 Rat Cuprizon increases expression EXP 6480464 Cuprizone results in increased expression of SNX7 mRNA CTD PMID:26577399 Snx7 Rat dicrotophos decreases expression ISO RGD:1313530 6480464 dicrotophos results in decreased expression of SNX7 mRNA CTD PMID:28302478 Snx7 Rat doxorubicin decreases expression ISO RGD:1313530 6480464 Doxorubicin results in decreased expression of SNX7 mRNA CTD PMID:29803840 Snx7 Rat ethanol increases expression ISO RGD:1313531 6480464 Ethanol results in increased expression of SNX7 mRNA CTD PMID:30319688 Snx7 Rat fluoranthene multiple interactions ISO RGD:1313531 6480464 [1-methylanthracene co-treated with fluoranthene] results in decreased expression of SNX7 mRNA CTD PMID:28329830 Snx7 Rat flutamide increases expression EXP 6480464 Flutamide results in increased expression of SNX7 mRNA CTD PMID:24136188 Snx7 Rat folic acid multiple interactions ISO RGD:1313531 6480464 [1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of SNX7 mRNA CTD PMID:22206623 Snx7 Rat folpet increases expression ISO RGD:1313531 6480464 folpet results in increased expression of SNX7 mRNA CTD PMID:31558096 Snx7 Rat furan increases expression EXP 6480464 furan results in increased expression of SNX7 mRNA CTD PMID:27387713 Snx7 Rat hydrogen peroxide affects expression ISO RGD:1313530 6480464 Hydrogen Peroxide affects the expression of SNX7 mRNA CTD PMID:20044591 Snx7 Rat inulin multiple interactions ISO RGD:1313531 6480464 [perfluorooctane sulfonic acid co-treated with Inulin] results in increased expression of SNX7 mRNA CTD PMID:36331819 Snx7 Rat ozone multiple interactions ISO RGD:1313531 6480464 [Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in increased more ... CTD PMID:34911549 Snx7 Rat paracetamol affects expression ISO RGD:1313531 6480464 Acetaminophen affects the expression of SNX7 mRNA CTD PMID:17562736 Snx7 Rat paracetamol increases expression EXP 6480464 Acetaminophen results in increased expression of SNX7 mRNA CTD PMID:33387578 Snx7 Rat perfluorooctane-1-sulfonic acid multiple interactions ISO RGD:1313531 6480464 [perfluorooctane sulfonic acid co-treated with Inulin] results in increased expression of SNX7 mRNA CTD PMID:36331819 Snx7 Rat propiconazole increases expression ISO RGD:1313531 6480464 propiconazole results in increased expression of SNX7 mRNA CTD PMID:21278054 Snx7 Rat quercetin decreases expression ISO RGD:1313530 6480464 Quercetin results in decreased expression of SNX7 mRNA CTD PMID:21632981 Snx7 Rat rac-lactic acid decreases expression ISO RGD:1313530 6480464 Lactic Acid results in decreased expression of SNX7 mRNA CTD PMID:30851411 Snx7 Rat serpentine asbestos increases methylation ISO RGD:1313530 6480464 Asbestos, Serpentine results in increased methylation of SNX7 5' UTR CTD PMID:29523930 Snx7 Rat sodium arsenite decreases expression ISO RGD:1313530 6480464 sodium arsenite results in decreased expression of SNX7 mRNA CTD PMID:38568856 Snx7 Rat sodium dichromate increases expression ISO RGD:1313531 6480464 sodium bichromate results in increased expression of SNX7 mRNA CTD PMID:31558096 Snx7 Rat sodium fluoride decreases expression ISO RGD:1313531 6480464 Sodium Fluoride results in decreased expression of SNX7 mRNA CTD PMID:27862939 Snx7 Rat tetrachloromethane multiple interactions EXP 6480464 schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of SNX7 mRNA] CTD PMID:31150632 Snx7 Rat tetrachloromethane increases expression ISO RGD:1313531 6480464 Carbon Tetrachloride results in increased expression of SNX7 mRNA CTD PMID:31919559 Snx7 Rat tetrachloromethane increases expression EXP 6480464 Carbon Tetrachloride results in increased expression of SNX7 mRNA CTD PMID:31150632 Snx7 Rat thioacetamide increases expression EXP 6480464 Thioacetamide results in increased expression of SNX7 mRNA CTD PMID:34492290 Snx7 Rat titanium dioxide increases expression ISO RGD:1313531 6480464 titanium dioxide results in increased expression of SNX7 mRNA CTD PMID:23557971|PMID:27760801 Snx7 Rat titanium dioxide decreases expression ISO RGD:1313531 6480464 titanium dioxide results in decreased expression of SNX7 mRNA CTD PMID:29264374 Snx7 Rat tremolite asbestos increases expression ISO RGD:1313531 6480464 tremolite results in increased expression of SNX7 mRNA CTD PMID:29279043 Snx7 Rat valproic acid increases expression ISO RGD:1313531 6480464 Valproic Acid results in increased expression of SNX7 mRNA CTD PMID:24896083 Snx7 Rat vinclozolin decreases methylation EXP 6480464 vinclozolin results in decreased methylation of SNX7 gene CTD PMID:31079544
(+)-schisandrin B (EXP) (2,4,5-trichlorophenoxy)acetic acid (ISO) 1,2-dichloroethane (ISO) 1,2-dimethylhydrazine (ISO) 17beta-estradiol (EXP,ISO) 2,3,7,8-tetrachlorodibenzodioxine (ISO) 2,4-dinitrotoluene (EXP) 2,6-dinitrotoluene (EXP) 2-hydroxypropanoic acid (ISO) 4,4'-sulfonyldiphenol (ISO) 4-hydroxyphenyl retinamide (ISO) 6-propyl-2-thiouracil (EXP) aldrin (ISO) antimycin A (ISO) Aroclor 1254 (ISO) arsenite(3-) (ISO) benzo[a]pyrene (ISO) bis(2-ethylhexyl) phthalate (ISO) bisphenol A (EXP) bisphenol F (ISO) cadmium dichloride (ISO) captan (ISO) carbon nanotube (ISO) CGP 52608 (ISO) chlorpyrifos (ISO) cobalt dichloride (EXP) copper(II) sulfate (ISO) Cuprizon (EXP) dicrotophos (ISO) doxorubicin (ISO) ethanol (ISO) fluoranthene (ISO) flutamide (EXP) folic acid (ISO) folpet (ISO) furan (EXP) hydrogen peroxide (ISO) inulin (ISO) ozone (ISO) paracetamol (EXP,ISO) perfluorooctane-1-sulfonic acid (ISO) propiconazole (ISO) quercetin (ISO) rac-lactic acid (ISO) serpentine asbestos (ISO) sodium arsenite (ISO) sodium dichromate (ISO) sodium fluoride (ISO) tetrachloromethane (EXP,ISO) thioacetamide (EXP) titanium dioxide (ISO) tremolite asbestos (ISO) valproic acid (ISO) vinclozolin (EXP)
Snx7 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 2 208,528,041 - 208,612,597 (-) NCBI GRCr8 mRatBN7.2 2 205,843,164 - 205,927,737 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 2 205,842,837 - 205,927,763 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 2 213,498,379 - 213,582,435 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 2 211,405,786 - 211,489,830 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 2 206,231,428 - 206,315,478 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 2 221,015,302 - 221,099,810 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 2 221,015,310 - 221,099,738 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 2 239,065,711 - 239,150,598 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 Rnor_5.0 2 238,076,916 - 238,096,183 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 2 214,162,589 - 214,246,543 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 2 214,125,655 - 214,209,605 (-) NCBI Celera 2 198,320,679 - 198,404,352 (-) NCBI Celera Cytogenetic Map 2 q42 NCBI
SNX7 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 1 98,661,319 - 98,760,500 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 1 98,661,701 - 98,760,500 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 1 99,127,277 - 99,226,056 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 1 98,899,801 - 98,998,644 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 1 98,839,438 - 98,938,075 NCBI Celera 1 97,381,135 - 97,479,949 (+) NCBI Celera Cytogenetic Map 1 p21.3 NCBI HuRef 1 97,250,323 - 97,349,291 (+) NCBI HuRef CHM1_1 1 99,243,539 - 99,342,253 (+) NCBI CHM1_1 T2T-CHM13v2.0 1 98,509,451 - 98,608,619 (+) NCBI T2T-CHM13v2.0
Snx7 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 3 117,575,146 - 117,662,585 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 3 117,575,296 - 117,662,585 (-) Ensembl GRCm39 Ensembl GRCm38 3 117,781,497 - 117,868,936 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 3 117,781,647 - 117,868,936 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 3 117,484,415 - 117,571,854 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 3 117,773,501 - 117,860,940 (-) NCBI MGSCv36 mm8 Celera 3 124,194,315 - 124,259,564 (-) NCBI Celera Cytogenetic Map 3 G1 NCBI cM Map 3 51.21 NCBI
Snx7 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955435 3,477,496 - 3,543,886 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955435 3,481,304 - 3,543,801 (+) NCBI ChiLan1.0 ChiLan1.0
SNX7 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 1 128,268,485 - 128,371,078 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 1 127,423,036 - 127,526,494 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 1 101,314,484 - 101,417,388 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 1 100,037,167 - 100,139,246 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 1 100,037,161 - 100,138,877 (+) Ensembl panpan1.1 panPan2
SNX7 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 6 51,004,307 - 51,388,283 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 6 51,025,203 - 51,094,539 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 6 53,709,065 - 53,801,940 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 6 51,377,707 - 51,741,307 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 6 51,377,710 - 51,471,108 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 6 51,069,870 - 51,162,778 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 6 51,050,379 - 51,143,251 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 6 51,482,304 - 51,575,249 (-) NCBI UU_Cfam_GSD_1.0
Snx7 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405058 107,925,108 - 108,007,624 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936537 940,724 - 1,022,887 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936537 940,282 - 1,022,903 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
SNX7 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 4 119,035,133 - 119,255,877 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 4 119,040,986 - 119,258,507 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 4 130,641,604 - 130,857,390 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
SNX7 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 20 34,531,399 - 34,639,958 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 20 34,531,151 - 34,639,107 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666035 1,646,767 - 1,755,905 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Snx7
.
Predicted Target Of
Count of predictions: 41 Count of miRNA genes: 33 Interacting mature miRNAs: 39 Transcripts: ENSRNOT00000022947 Prediction methods: Miranda, Targetscan Result types: miRGate_prediction
1578648 Bss11 Bone structure and strength QTL 11 4.7 femur morphology trait (VT:0000559) femoral neck cortical cross-sectional area (CMO:0001702) 2 114837527 211674221 Rat 1358356 Srcrt1 Stress Responsive Cort QTL1 3.66 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 2 161699179 222436696 Rat 1331734 Bp204 Blood pressure QTL 204 3.61192 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 2 168358098 223265385 Rat 1354648 Bp239 Blood pressure QTL 239 0.001 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 66118463 226797303 Rat 1354649 Kidm17 Kidney mass QTL 17 2.9 kidney mass (VT:0002707) calculated kidney weight (CMO:0000160) 2 81754530 227146641 Rat 10755499 Bp389 Blood pressure QTL 389 2.61 arterial blood pressure trait (VT:2000000) diastolic blood pressure (CMO:0000005) 2 18960362 228801039 Rat 152025245 Scl81 Serum cholesterol level QTL 81 3.49 blood cholesterol amount (VT:0000180) 2 122609194 206936711 Rat 61458 Bp10 Blood pressure QTL 10 3.42 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 189020722 215287351 Rat 70162 Bp63 Blood pressure QTL 63 5.64 arterial blood pressure trait (VT:2000000) blood pressure measurement (CMO:0000003) 2 169745596 214745596 Rat 1554319 Bmd2 Bone mineral density QTL 2 13.4 0.0001 lumbar vertebra area (VT:0010570) lumbar vertebra cross-sectional area (CMO:0001689) 2 114837675 212549332 Rat 1581569 Uae32 Urinary albumin excretion QTL 32 0.0001 urine protein amount (VT:0005160) urine albumin excretion rate (CMO:0000757) 2 78665619 219826953 Rat 2317752 Glom23 Glomerulus QTL 23 3.6 urine protein amount (VT:0005160) urine protein level (CMO:0000591) 2 193452645 245889826 Rat 61469 Bp16 Blood pressure QTL 16 5.64 arterial blood pressure trait (VT:2000000) blood pressure measurement (CMO:0000003) 2 169745596 214745596 Rat 1358900 Bw48 Body weight QTL 48 4.88 body mass (VT:0001259) body weight (CMO:0000012) 2 157142078 211086598 Rat 1359031 Bp275 Blood pressure QTL 275 arterial blood pressure trait (VT:2000000) diastolic blood pressure (CMO:0000005) 2 185876309 219753474 Rat 1581499 Esta2 Estrogen-induced thymic atrophy QTL 2 thymus mass (VT:0004954) thymus wet weight (CMO:0000855) 2 189599258 226936289 Rat 9589044 Scfw1 Subcutaneous fat weight QTL 1 5.8 0.001 subcutaneous adipose mass (VT:1000472) abdominal subcutaneous fat pad weight (CMO:0002069) 2 182171407 227171407 Rat 8694435 Bw166 Body weight QTL 166 14.08 0.001 retroperitoneal fat pad mass (VT:0010430) retroperitoneal fat pad weight to body weight ratio (CMO:0000635) 2 182171407 227171407 Rat 1298083 Bp158 Blood pressure QTL 158 2.62 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 189020722 215287351 Rat 8662832 Vetf7 Vascular elastic tissue fragility QTL 7 3.5 aorta elastin amount (VT:0003905) aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002) 2 81689826 221035911 Rat 1331745 Bp203 Blood pressure QTL 203 4.377 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 2 189599258 218414891 Rat 8694194 Abfw1 Abdominal fat weight QTL 1 11.7 0.001 visceral adipose mass (VT:0010063) abdominal fat pad weight to body weight ratio (CMO:0000095) 2 182171407 227171407 Rat 61366 Iddm3 Insulin dependent diabetes mellitus QTL 3 4.7 blood glucose amount (VT:0000188) blood glucose level (CMO:0000046) 2 189599258 234599258 Rat 1359022 Ppulsi1 Prepulse inhibition QTL 1 3.63 prepulse inhibition trait (VT:0003088) acoustic startle response measurement (CMO:0001519) 2 136916935 213594495 Rat 1641891 Alcrsp17 Alcohol response QTL 17 response to alcohol trait (VT:0010489) duration of loss of righting reflex (CMO:0002289) 2 149559561 249053267 Rat 724534 Uae6 Urinary albumin excretion QTL 6 10 urine albumin amount (VT:0002871) urine albumin level (CMO:0000130) 2 78665619 249053267 Rat 2300189 Bmd48 Bone mineral density QTL 48 5.8 0.0001 femur mineral mass (VT:0010011) volumetric bone mineral density (CMO:0001553) 2 179335906 224335906 Rat 8662843 Vetf9 Vascular elastic tissue fragility QTL 9 2.05 thoracic aorta molecular composition trait (VT:0010568) aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003) 2 157142078 226277316 Rat 2301408 Kidm36 Kidney mass QTL 36 0.002 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 2 190613715 226808892 Rat 2307174 Activ3 Activity QTL 3 4.83 0.000058 locomotor behavior trait (VT:0001392) number of entries into a discrete space in an experimental apparatus (CMO:0000960) 2 168594495 213594495 Rat 1598813 Memor9 Memory QTL 9 2.7 exploratory behavior trait (VT:0010471) average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674) 2 199341726 234244620 Rat 1331794 Bp202 Blood pressure QTL 202 3.66819 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 141194931 223265385 Rat 1331805 Cm29 Cardiac mass QTL 29 3.50746 heart mass (VT:0007028) heart wet weight (CMO:0000069) 2 141194931 223265385 Rat 2298479 Eau5 Experimental allergic uveoretinitis QTL 5 0.0021 uvea integrity trait (VT:0010551) experimental autoimmune uveitis score (CMO:0001504) 2 202446871 237938339 Rat 634308 Sach6 Saccharin preference QTL 6 4.9 taste sensitivity trait (VT:0001986) saccharin intake volume to total fluid intake volume ratio (CMO:0001601) 2 112456140 212696837 Rat 724568 Uae13 Urinary albumin excretion QTL 13 4.4 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 2 143157029 210020885 Rat 738013 Alc15 Alcohol consumption QTL 15 4.1 0.00022 consumption behavior trait (VT:0002069) ethanol drink intake rate to body weight ratio (CMO:0001616) 2 184165752 229165752 Rat 61398 Bp50 Blood pressure QTL 50 4.4 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 189599258 234599258 Rat 631507 Bp105 Blood pressure QTL 105 0.001 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 2 112456140 212696837 Rat 1641925 Alcrsp2 Alcohol response QTL 2 response to alcohol trait (VT:0010489) duration of loss of righting reflex (CMO:0002289) 2 149559561 221167075 Rat 61417 Cia10 Collagen induced arthritis QTL 10 3.4 joint integrity trait (VT:0010548) experimental arthritis severity measurement (CMO:0001459) 2 179946951 224946951 Rat 1354622 Kidm16 Kidney mass QTL 16 3 kidney mass (VT:0002707) left kidney wet weight (CMO:0000083) 2 81754530 222436696 Rat 8694383 Bw158 Body weight QTL 158 7.69 0.001 body lean mass (VT:0010483) lean tissue morphological measurement (CMO:0002184) 2 182171407 227171407 Rat 1598835 Anxrr18 Anxiety related response QTL 18 2.98 body movement coordination trait (VT:0005424) number of rearing movements in an experimental apparatus (CMO:0001752) 2 200990457 245990457 Rat 7488927 Bp365 Blood pressure QTL 365 0.008 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 2 162765032 207765032 Rat 1598838 Bp290 Blood pressure QTL 290 1.9 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 166539266 211539266 Rat 2306901 Bp337 Blood pressure QTL 337 0.01 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 164073756 227146641 Rat 1354605 Rf48 Renal function QTL 48 2.9 blood creatinine amount (VT:0005328) plasma creatinine level (CMO:0000537) 2 74786664 206665859 Rat 2293084 Iddm26 Insulin dependent diabetes mellitus QTL 26 2.9 blood glucose amount (VT:0000188) blood glucose level (CMO:0000046) 2 174930955 213594495 Rat
D2Got143
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 2 205,849,220 - 205,849,365 (-) MAPPER mRatBN7.2 mRatBN7.2 2 205,849,220 - 205,849,365 (+) MAPPER mRatBN7.2 Rnor_6.0 2 221,021,359 - 221,021,503 NCBI Rnor6.0 Rnor_6.0 2 220,021,485 - 220,021,629 NCBI Rnor6.0 Rnor_5.0 2 238,089,982 - 238,090,126 UniSTS Rnor5.0 Rnor_5.0 2 239,071,768 - 239,071,912 UniSTS Rnor5.0 RGSC_v3.4 2 214,168,646 - 214,168,790 UniSTS RGSC3.4 RGSC_v3.4 2 214,168,645 - 214,168,790 RGD RGSC3.4 RGSC_v3.1 2 214,131,708 - 214,131,852 RGD Celera 2 198,326,736 - 198,326,880 UniSTS RH 3.4 Map 2 1494.4 UniSTS RH 3.4 Map 2 1494.4 RGD RH 2.0 Map 2 1068.8 RGD Cytogenetic Map 2 q41 UniSTS
RH143548
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 2 205,928,522 - 205,928,764 (+) MAPPER mRatBN7.2 Rnor_6.0 2 221,100,599 - 221,100,840 NCBI Rnor6.0 Rnor_5.0 2 239,151,008 - 239,151,249 UniSTS Rnor5.0 RGSC_v3.4 2 214,247,404 - 214,247,645 UniSTS RGSC3.4 Celera 2 198,405,213 - 198,405,454 UniSTS RH 3.4 Map 2 1488.6 UniSTS Cytogenetic Map 2 q41 UniSTS
RH141617
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 2 205,888,396 - 205,888,576 (+) MAPPER mRatBN7.2 Rnor_6.0 2 221,060,420 - 221,060,599 NCBI Rnor6.0 Rnor_5.0 2 239,110,829 - 239,111,008 UniSTS Rnor5.0 RGSC_v3.4 2 214,207,280 - 214,207,459 UniSTS RGSC3.4 Celera 2 198,365,078 - 198,365,257 UniSTS RH 3.4 Map 2 1490.5 UniSTS Cytogenetic Map 2 q41 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
9
11
49
113
91
90
59
25
59
6
218
97
93
45
60
31
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Ensembl Acc Id:
ENSRNOT00000022947 ⟹ ENSRNOP00000022947
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 2 205,842,837 - 205,927,763 (-) Ensembl Rnor_6.0 Ensembl 2 221,015,310 - 221,099,738 (-) Ensembl
RefSeq Acc Id:
NM_001012083 ⟹ NP_001012083
RefSeq Status:
PROVISIONAL
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 2 208,528,041 - 208,612,535 (-) NCBI mRatBN7.2 2 205,843,164 - 205,927,662 (-) NCBI Rnor_6.0 2 221,015,302 - 221,099,738 (-) NCBI Rnor_5.0 2 239,065,711 - 239,150,598 (-) NCBI RGSC_v3.4 2 214,162,589 - 214,246,543 (-) RGD Celera 2 198,320,679 - 198,404,352 (-) RGD
Sequence:
GGACGGCGAGCGCCTGGCGTCGGGCTCCTCCGAGCTGGCGGTCGGGGAGAGCCCGCGGGGCGGCGCCCCGATCCCGAGTGGCAGCGGCTCCTGCAGCCTACTGCAGGCCGATGTGCTGGATCTAGACG
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RefSeq Acc Id:
XM_039102434 ⟹ XP_038958362
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 2 208,557,741 - 208,612,597 (-) NCBI mRatBN7.2 2 205,880,032 - 205,927,737 (-) NCBI
RefSeq Acc Id:
NP_001012083 ⟸ NM_001012083
- UniProtKB:
Q66H41 (UniProtKB/TrEMBL), F7EXP7 (UniProtKB/TrEMBL)
- Sequence:
MDMNSFSPMMPTSPLSMINQIKFEDGPDLKDLFITVDAPESHVTTIETFITYRIVTKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRI
hide sequence
Ensembl Acc Id:
ENSRNOP00000022947 ⟸ ENSRNOT00000022947
RefSeq Acc Id:
XP_038958362 ⟸ XM_039102434
- Peptide Label:
isoform X1
- UniProtKB:
F7EXP7 (UniProtKB/TrEMBL)
RGD ID: 13691712 Promoter ID: EPDNEW_R2237 Type: multiple initiation site Name: Snx7_1 Description: sorting nexin 7 SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 2 221,099,749 - 221,099,809 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2021-03-09
Snx7
sorting nexin 7
LOC108348210
uncharacterized LOC108348210
Data merged from RGD:11508023
737654 PROVISIONAL
2016-08-02
LOC108348210
uncharacterized LOC108348210
Symbol and Name status set to provisional
70820 PROVISIONAL
2005-12-06
Snx7
sorting nexin 7
Snx7_predicted
sorting nexin 7 (predicted)
Symbol and Name updated
1559027 APPROVED
2005-01-12
Snx7_predicted
sorting nexin 7 (predicted)
Symbol and Name status set to approved
70820 APPROVED
