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Gene: Snx7 (sorting nexin 7) Chinchilla lanigera

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Symbol:

Snx7

Name:

sorting nexin 7

RGD ID:

8779405

Description:

INVOLVED IN positive regulation of autophagosome assembly (ortholog); protein transport (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN early endosome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

sorting nexin-7

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SNX7 (sorting nexin 7)	NCBI	Ortholog
Mus musculus (house mouse):	Snx7 (sorting nexin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Snx7 (sorting nexin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SNX7 (sorting nexin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SNX7 (sorting nexin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Snx7 (sorting nexin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SNX7 (sorting nexin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SNX7 (sorting nexin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Snx7 (sorting nexin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955435	3,477,496 - 3,543,886 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955435	3,481,304 - 3,543,801 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snx7	Chinchilla	Experimental Liver Cirrhosis		ISO	SNX7 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:25380136

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snx7	Chinchilla	positive regulation of autophagosome assembly	involved_in	ISO	SNX7 (Homo sapiens)	9068941	PMID:32513819	UniProt	PMID:32513819
Snx7	Chinchilla	protein transport	involved_in	ISO	SNX7 (Homo sapiens)	9068941	PMID:32513819	UniProt	PMID:32513819

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snx7	Chinchilla	early endosome	is_active_in	ISO	SNX7 (Homo sapiens)	9068941	PMID:32513819	UniProt	PMID:32513819

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snx7	Chinchilla	protein binding	enables	ISO	UniProtKB:O95219	9068941	PMID:23085988 more ...	IntAct	PMID:23085988 more ...
Snx7	Chinchilla	protein binding	enables	ISO	UniProtKB:O95219 more ...	9068941	PMID:32296183	IntAct	PMID:32296183
Snx7	Chinchilla	protein binding	enables	ISO	UniProtKB:O14964 and UniProtKB:Q8IYF3	9068941	PMID:25416956	IntAct	PMID:25416956
Snx7	Chinchilla	protein binding	enables	ISO	UniProtKB:Q8IYF3	9068941	PMID:16189514	IntAct	PMID:16189514
Snx7	Chinchilla	protein binding	enables	ISO	UniProtKB:Q5DTT2	9068941	PMID:24261326	SynGO-UCL	PMID:24261326

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

PMID:22301074

Snx7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955435	3,477,496 - 3,543,886 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955435	3,481,304 - 3,543,801 (+)	NCBI	ChiLan1.0	ChiLan1.0

SNX7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	98,661,319 - 98,760,500 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	98,661,701 - 98,760,500 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	99,127,277 - 99,226,056 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	98,899,801 - 98,998,644 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	98,839,438 - 98,938,075	NCBI
Celera	1	97,381,135 - 97,479,949 (+)	NCBI		Celera
Cytogenetic Map	1	p21.3	NCBI
HuRef	1	97,250,323 - 97,349,291 (+)	NCBI		HuRef
CHM1_1	1	99,243,539 - 99,342,253 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	98,509,451 - 98,608,619 (+)	NCBI		T2T-CHM13v2.0

Snx7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	117,575,146 - 117,662,585 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	117,575,296 - 117,662,585 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	117,781,497 - 117,868,936 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	117,781,647 - 117,868,936 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	117,484,415 - 117,571,854 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	117,773,501 - 117,860,940 (-)	NCBI		MGSCv36	mm8
Celera	3	124,194,315 - 124,259,564 (-)	NCBI		Celera
Cytogenetic Map	3	G1	NCBI
cM Map	3	51.21	NCBI

Snx7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	208,528,041 - 208,612,597 (-)	NCBI		GRCr8
mRatBN7.2	2	205,843,164 - 205,927,737 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	205,842,837 - 205,927,763 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	213,498,379 - 213,582,435 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	211,405,786 - 211,489,830 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	206,231,428 - 206,315,478 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	221,015,302 - 221,099,810 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	221,015,310 - 221,099,738 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	239,065,711 - 239,150,598 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	2	238,076,916 - 238,096,183 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	214,162,589 - 214,246,543 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	214,125,655 - 214,209,605 (-)	NCBI
Celera	2	198,320,679 - 198,404,352 (-)	NCBI		Celera
Cytogenetic Map	2	q42	NCBI

SNX7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	128,268,485 - 128,371,078 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	127,423,036 - 127,526,494 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	101,314,484 - 101,417,388 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	100,037,167 - 100,139,246 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	100,037,161 - 100,138,877 (+)	Ensembl	panpan1.1		panPan2

SNX7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	51,004,307 - 51,388,283 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	51,025,203 - 51,094,539 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	53,709,065 - 53,801,940 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	51,377,707 - 51,741,307 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	51,377,710 - 51,471,108 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	51,069,870 - 51,162,778 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	51,050,379 - 51,143,251 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	51,482,304 - 51,575,249 (-)	NCBI		UU_Cfam_GSD_1.0

Snx7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	107,925,108 - 108,007,624 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936537	940,724 - 1,022,887 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936537	940,282 - 1,022,903 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNX7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	119,035,133 - 119,255,877 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	119,040,986 - 119,258,507 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	130,641,604 - 130,857,390 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SNX7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	34,531,399 - 34,639,958 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	34,531,151 - 34,639,107 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666035	1,646,767 - 1,755,905 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Snx7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624857	1,252,995 - 1,365,308 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624857	1,253,148 - 1,365,322 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_013516541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01032788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01032789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01032790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01032791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCB01111236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01074188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000007596 ⟹ ENSCLAP00000007479

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955435	3,477,496 - 3,543,886 (+)	Ensembl

Ensembl Acc Id:

ENSCLAT00000007597 ⟹ ENSCLAP00000007480

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955435	3,481,228 - 3,543,886 (+)	Ensembl

RefSeq Acc Id:

XM_013516541 ⟹ XP_013371995

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955435	3,481,304 - 3,543,801 (+)	NCBI

Sequence:

show sequence

CCCGGCCCCGCTCCAGCCCGCTCCAGCCCGCTCCAGCGCGCTCGGGCCCCGCGCGCGGCCAGGCGGGGCTGCGCCGGCGGCGGCGCGTCTGCGCGGGGCCGGGCGGCCGGCGGGAGCCAATGGGCGCG
CGCGGGAGCCGGGCGGGCGGCGGCGGCCGGGCGCGCTCCGCGGGGATGGAGGCCGAGCGCCCCTCGGAGCTGGCGGCCGCGGGCAGCCCGGGCCCCGGCGCCGCGCTGGAGCTGGACGCGGACGAGGA
CGACCTGGAGGTGTTCAGCAAGGATGCCTCCTTGACGGACATTAACTCCTTCAGCCCTATGATGCCAACGTCGCCTTTATCAATGATCAACCAAATCAAGTTTGAAGATGAGTCAGACCTGAAGGATC
TCTTCATTACCGTCGATGAACCTGAGAGCCATGTCACTACAATTGAAACGTTCATTACTTACAGAATCATTACCAAGACGTCTCGTGGGGAGTTCGACTCTAGTGAATTTGAAGTTAGGAGGCGTTAT
CAAGACTTCCTTTGGTTGAAGGGCAAACTTGAAGAAGCACACCCCACTCTCATTATTCCACCATTACCGGAAAAGTTTATAGTGAAAGGAATGGTGGAGCGTTTCAACGATGACTTCATCGAGACCCG
CAGGAAGGCATTACATAAATTTTTGAACAGAATTGCTGATCATCCCACTTTAACATTTAATGAAGACTTCAAGGTTTTTCTCACTGCACAAGCTTGGGAGCTCTCCTCTCACAAGAAGCAAGGACCCG
GGCTGCTGAGCAGGATGGGGCAGACAGTCAGAGCCGTGGCGTCCTCCTTGAGAGGGGTGAAAAACCGCCCAGAGGATTTCATGGAAATGAATCACTTCATTGAAATATTTAGCCAGAAGATTAATTTA
ATAGATAAAATATCTCAGAGGATTTACAAAGAAGAAAGGGAATACTTTGATGAAATGAAGGAATACGGCCCAATTCATGTTCTGTGGTCTGCGTCAGAGGAAGATCTGGCGGACCCTCTGAAAGGCAT
TGCCAGCTGTATTGAGGAGTGCTGTACGGCCATTGAAAAGCGGATGTCCGGTCTCTCCGAGGCCGTGCTTCCGGTCATGCATGAGTACGTGCTTTACGGTGATGTGTTAATGGGTGTTATGAAAAGAA
GAGACCAAATACAAGCAGAACTGGATTCCAGAGTTGAAGCTTTGACCTACAGAAAGGCAGACGCTGATCTGCTTACAGAAGAGATTGGAAAACTTGAAGACAAAGTGGAATGTGCCAATAATGCCCTG
AGAGCAGACTGGGAAAGATGGAAACAAAATATGCAGAGTGATATCAAGTCCGCCTTCGCAGACATGGCTGAGGAGAACGTCCACTACTACGAACAGTGCCTTGCTACGTGGGAATCATTCCTTACATC
ACAGACTGACCTTCACTTGGAAGAAGACTCTGAGGATAGACTTTAACCCCACTGAGGACTTCTGTTTGATGCTTGGGAGACAGCACCTTCGAACCAAAGTTACTCTTTTTGGATCAGCTGTGCCCTTT
GTAAAGTGTATGGAAAACATTTCACACTATCTGGAAAACCAACAACTTGAAAACTCAGGTATTCCAGGTCCTTGATATGAATTTGGAGATATATCCATCAATCTATGTAGATCTATTCTATGATATAT
ATTAATATAGATATATACGTCTATTATATTATACAGATAGATATATGTATCTATATTGATAAAGATTTAGCTTAACCTTAATTATGTTCTTAAATTTATGTGCCAATAATTACATAAAGATTTTTTTC
TTAAATATATGATTGTGGAACATGAGATTTTAAATATGTTATAAAGACTCAGTTTTAATAAAAAAATT

hide sequence


Protein RefSeqs	XP_013371995	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000007479
	ENSCLAP00000007479.1
	ENSCLAP00000007480.1

RefSeq Acc Id:

XP_013371995 ⟸ XM_013516541

- UniProtKB:

A0A8C2UZ38 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGARGSRAGGGGRARSAGMEAERPSELAAAGSPGPGAALELDADEDDLEVFSKDASLTDINSFSPMMPTSPLSMINQIKFEDESDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVR
RRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKVFLTAQAWELSSHKKQGPGLLSRMGQTVRAVASSLRGVKNRPEDFMEMNHFIEIFSQK
INLIDKISQRIYKEEREYFDEMKEYGPIHVLWSASEEDLADPLKGIASCIEECCTAIEKRMSGLSEAVLPVMHEYVLYGDVLMGVMKRRDQIQAELDSRVEALTYRKADADLLTEEIGKLEDKVECAN
NALRADWERWKQNMQSDIKSAFADMAEENVHYYEQCLATWESFLTSQTDLHLEEDSEDRL

hide sequence

Ensembl Acc Id:

ENSCLAP00000007480 ⟸ ENSCLAT00000007597

Ensembl Acc Id:

ENSCLAP00000007479 ⟸ ENSCLAT00000007596

Protein Domains

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000005256	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000007596	ENTREZGENE
	ENSCLAT00000007596.1	UniProtKB/TrEMBL
	ENSCLAT00000007597.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1270.60	UniProtKB/TrEMBL
	3.30.1520.10	UniProtKB/TrEMBL
InterPro	AH/BAR_dom_sf	UniProtKB/TrEMBL
	BAR_SNX7	UniProtKB/TrEMBL
	PX_dom	UniProtKB/TrEMBL
	PX_dom_sf	UniProtKB/TrEMBL
	PX_SNX7	UniProtKB/TrEMBL
NCBI Gene	Snx7	ENTREZGENE
PANTHER	PTHR45949:SF3	UniProtKB/TrEMBL
	SORTING NEXIN-4	UniProtKB/TrEMBL
Pfam	PF00787	UniProtKB/TrEMBL
PROSITE	PS50195	UniProtKB/TrEMBL
SMART	SM00312	UniProtKB/TrEMBL
Superfamily-SCOP	SSF103657	UniProtKB/TrEMBL
	SSF64268	UniProtKB/TrEMBL
UniProt	A0A8C2UZ38	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2V1S6_CHILA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - CTD