Tnfsf18 (TNF superfamily member 18) - Rat Genome Database

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Gene: Tnfsf18 (TNF superfamily member 18) Rattus norvegicus
Analyze
Symbol: Tnfsf18
Name: TNF superfamily member 18
RGD ID: 1305066
Description: Predicted to enable identical protein binding activity and tumor necrosis factor receptor superfamily binding activity. Predicted to be involved in several processes, including positive regulation of NF-kappaB transcription factor activity; regulation of T cell activation; and regulation of leukocyte chemotaxis. Predicted to be located in membrane. Predicted to be active in cell surface. Orthologous to human TNFSF18 (TNF superfamily member 18); PARTICIPATES IN cytokine mediated signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC364031; Tnlg2a; tumor necrosis factor (ligand) superfamily, member 18; tumor necrosis factor ligand 2a; tumor necrosis factor ligand superfamily member 18; tumor necrosis factor superfamily member 18
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81376,366,790 - 76,440,673 (+)NCBIGRCr8
mRatBN7.21373,833,478 - 73,907,249 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1373,831,252 - 73,843,169 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1376,412,930 - 76,422,686 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01377,710,263 - 77,720,018 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01374,970,140 - 74,979,895 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01379,378,412 - 79,388,687 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1379,378,733 - 79,388,498 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01384,270,937 - 84,282,548 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41377,137,045 - 77,145,251 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11377,151,151 - 77,159,439 (+)NCBI
Celera1373,609,947 - 73,620,222 (+)NCBICelera
Cytogenetic Map13q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tnfsf18Rat1q24 Deletion Syndrome  ISORGD:13128758554872ClinVar Annotator: match by term: 1q24q25 microdeletion syndromeClinVarPMID:21548129|PMID:21681106|PMID:25741868|PMID:26333682
Tnfsf18Ratantithrombin III deficiency  ISORGD:13128758554872ClinVar Annotator: match by term: Hereditary antithrombin deficiencyClinVar 
Tnfsf18Ratautoimmune lymphoproliferative syndrome  ISORGD:13128758554872ClinVar Annotator: match by term: AUTOIMMUNE LYMPHOPROLIFERATIVE SYNDROME, TYPE I, AUTOSOMAL DOMINANTClinVarPMID:22857792|PMID:25451160|PMID:28492532
Tnfsf18Ratgastrointestinal stromal tumor  ISORGD:13128758554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
Tnfsf18Ratparathyroid carcinoma  ISORGD:13128758554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532

1 to 20 of 37 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tnfsf18Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of TNFSF18 mRNACTDPMID:33387578
Tnfsf18Rat4-nitrophenol decreases expressionISORGD:131287664804644-nitrophenol results in decreased expression of TNFSF18 mRNACTDPMID:34673133
Tnfsf18Ratalpha-amanitin affects expressionISORGD:13128766480464Alpha-Amanitin affects the expression of TNFSF18 mRNACTDPMID:38531469
Tnfsf18Rataripiprazole multiple interactionsISORGD:13128756480464[Aripiprazole co-treated with Ozone] results in increased expression of TNFSF18 mRNACTDPMID:31476115
Tnfsf18Ratarsenous acid increases expressionISORGD:13128756480464Arsenic Trioxide results in increased expression of TNFSF18 mRNACTDPMID:17530438|PMID:21461292
Tnfsf18Ratbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of TNFSF18 mRNACTDPMID:29552716
Tnfsf18Ratcarbon nanotube increases expressionISORGD:13128766480464Nanotubes, Carbon analog results in increased expression of TNFSF18 mRNA; Nanotubes, Carbon results in increased more ...CTDPMID:25554681
Tnfsf18Ratcopper atom multiple interactionsISORGD:13128756480464[NSC 689534 binds to Copper] which results in increased expression of TNFSF18 mRNACTDPMID:20971185
Tnfsf18Ratcopper(0) multiple interactionsISORGD:13128756480464[NSC 689534 binds to Copper] which results in increased expression of TNFSF18 mRNACTDPMID:20971185
Tnfsf18Ratdexamethasone multiple interactionsISORGD:13128766480464Dexamethasone inhibits the reaction [Lipopolysaccharides results in increased expression of TNFSF18 protein]CTDPMID:21951872
Tnfsf18Ratdiarsenic trioxide increases expressionISORGD:13128756480464Arsenic Trioxide results in increased expression of TNFSF18 mRNACTDPMID:17530438|PMID:21461292
Tnfsf18Ratdiclofenac decreases expressionISORGD:13128766480464Diclofenac results in decreased expression of TNFSF18 mRNACTDPMID:35537566
Tnfsf18Ratdisodium selenite increases expressionISORGD:13128756480464Sodium Selenite results in increased expression of TNFSF18 mRNACTDPMID:24383545
Tnfsf18Ratendosulfan affects expressionEXP 6480464Endosulfan affects the expression of TNFSF18 mRNACTDPMID:29391264
Tnfsf18Ratepoxiconazole decreases expressionISORGD:13128766480464epoxiconazole results in decreased expression of TNFSF18 mRNACTDPMID:35436446
Tnfsf18Ratgentamycin increases expressionEXP 6480464Gentamicins results in increased expression of TNFSF18 mRNACTDPMID:33387578
Tnfsf18Ratlipopolysaccharide multiple interactionsISORGD:13128766480464Dexamethasone inhibits the reaction [Lipopolysaccharides results in increased expression of TNFSF18 protein]; TNFSF18 mutant form more ...CTDPMID:21951872
Tnfsf18Ratlipopolysaccharide increases response to substanceISORGD:13128766480464TNFSF18 results in increased susceptibility to LipopolysaccharidesCTDPMID:21951872
Tnfsf18Ratlipopolysaccharide increases expressionISORGD:13128766480464Lipopolysaccharides results in increased expression of TNFSF18 proteinCTDPMID:21951872
Tnfsf18Ratokadaic acid increases expressionISORGD:13128756480464Okadaic Acid results in increased expression of TNFSF18 mRNACTDPMID:38832940

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Biological Process
1 to 20 of 27 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tnfsf18Ratactivated CD4-positive, alpha-beta T cell proliferation NOT|involved_inISORGD:13128761624291 PMID:24107315RGDPMID:24107315
Tnfsf18Ratnegative regulation of T-helper 17 cell lineage commitment involved_inISORGD:13128761624291 PMID:24107315RGDPMID:24107315
Tnfsf18Ratpositive regulation of cell adhesion involved_inISORGD:13128761624291UniProtKB:O35714 PMID:23892569RGDPMID:23892569
Tnfsf18Ratpositive regulation of cell adhesion involved_inISORGD:13128751624291UniProtKB:Q9Y5U5 PMID:23892569RGDPMID:23892569
Tnfsf18Ratpositive regulation of inflammatory response involved_inISORGD:13128761624291 PMID:24107315RGDPMID:24107315
Tnfsf18Ratpositive regulation of interleukin-10 production NOT|involved_inISORGD:13128761624291 PMID:24107315RGDPMID:24107315
Tnfsf18Ratpositive regulation of interleukin-12 production NOT|involved_inISORGD:13128761624291 PMID:24107315RGDPMID:24107315
Tnfsf18Ratpositive regulation of leukocyte migration involved_inISORGD:13128751624291UniProtKB:Q9Y5U5 PMID:23892569RGDPMID:23892569
Tnfsf18Ratpositive regulation of macrophage chemotaxis involved_inISORGD:13128761624291 PMID:24107315RGDPMID:24107315
Tnfsf18Ratpositive regulation of monocyte chemotaxis involved_inISORGD:13128761624291 PMID:24107315RGDPMID:24107315
Tnfsf18Ratpositive regulation of NF-kappaB transcription factor activity involved_inISORGD:13128761624291 PMID:14521928RGDPMID:14521928
Tnfsf18Ratpositive regulation of tyrosine phosphorylation of STAT protein involved_inISORGD:13128751624291UniProtKB:Q9Y5U5 PMID:23892569RGDPMID:23892569
Tnfsf18Ratregulation of CD40 signaling pathway NOT|involved_inISORGD:13128761624291 PMID:24107315RGDPMID:24107315
Tnfsf18Ratregulation of dendritic cell chemotaxis involved_inISORGD:13128761624291 PMID:24107315RGDPMID:24107315
Tnfsf18Ratregulation of interleukin-6 production NOT|involved_inISORGD:13128761624291 PMID:24107315RGDPMID:24107315
Tnfsf18Ratregulation of monocyte chemotactic protein-1 production NOT|involved_inISORGD:13128761624291 PMID:24107315RGDPMID:24107315
Tnfsf18Ratregulation of protein-containing complex assembly involved_inISORGD:13128761624291 PMID:24107315RGDPMID:24107315
Tnfsf18Ratregulation of T cell proliferation involved_inIBAMGI:2673064|PANTHER:PTN0003920871600115GO_REF:0000033GO_CentralGO_REF:0000033
Tnfsf18Ratregulation of T cell proliferation involved_inISORGD:13128761624291 PMID:14608036RGDPMID:14608036
Tnfsf18Ratregulation of tumor necrosis factor production NOT|involved_inISORGD:13128761624291 PMID:24107315RGDPMID:24107315
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Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tnfsf18Ratcell surface located_inISORGD:13128761624291 PMID:14521928RGDPMID:14521928
Tnfsf18Ratcell surface is_active_inIBAMGI:2673064|PANTHER:PTN0003920871600115GO_REF:0000033GO_CentralGO_REF:0000033
Tnfsf18Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tnfsf18Ratidentical protein binding enablesISORGD:13128751624291UniProtKB:Q9UNG2 PMID:18040044, PMID:18378892RGDPMID:18040044|PMID:18378892
Tnfsf18Ratidentical protein binding enablesISORGD:13128761624291UniProtKB:Q7TS55 PMID:18178614, PMID:18182486RGDPMID:18178614|PMID:18182486
Tnfsf18Ratprotein binding enablesISORGD:13128751624291UniProtKB:Q2M3D2|UniProtKB:Q9Y5U5 PMID:18040044, PMID:18378892, PMID:32296183RGDPMID:18040044|PMID:18378892|PMID:32296183
Tnfsf18Ratprotein binding enablesISORGD:13128761624291UniProtKB:O35714 PMID:14647196, PMID:18182486RGDPMID:14647196|PMID:18182486
Tnfsf18Rattumor necrosis factor receptor superfamily binding enablesISORGD:13128761624291 PMID:14521928RGDPMID:14521928
Tnfsf18Rattumor necrosis factor receptor superfamily binding enablesIEAInterPro:IPR0423801600115GO_REF:0000002InterProGO_REF:0000002
Tnfsf18Rattumor necrosis factor receptor superfamily binding enablesIBAMGI:2673064|PANTHER:PTN0003920871600115GO_REF:0000033GO_CentralGO_REF:0000033

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tnfsf18Ratcytokine mediated signaling pathway  IEA 6907045 KEGGrno:04060

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:14521928   PMID:14608036   PMID:18040044   PMID:18178614   PMID:18182486   PMID:18378892   PMID:23892569   PMID:24107315   PMID:26646413  



Tnfsf18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81376,366,790 - 76,440,673 (+)NCBIGRCr8
mRatBN7.21373,833,478 - 73,907,249 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1373,831,252 - 73,843,169 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1376,412,930 - 76,422,686 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01377,710,263 - 77,720,018 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01374,970,140 - 74,979,895 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01379,378,412 - 79,388,687 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1379,378,733 - 79,388,498 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01384,270,937 - 84,282,548 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41377,137,045 - 77,145,251 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11377,151,151 - 77,159,439 (+)NCBI
Celera1373,609,947 - 73,620,222 (+)NCBICelera
Cytogenetic Map13q22NCBI
TNFSF18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381173,039,202 - 173,050,941 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1173,039,202 - 173,050,941 (-)EnsemblGRCh38hg38GRCh38
GRCh371173,008,342 - 173,020,081 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361171,276,983 - 171,286,726 (-)NCBINCBI36Build 36hg18NCBI36
Build 341169,742,107 - 169,751,713NCBI
Celera1146,119,822 - 146,129,565 (-)NCBICelera
Cytogenetic Map1q25.1NCBI
HuRef1144,235,111 - 144,244,854 (-)NCBIHuRef
CHM1_11174,432,835 - 174,442,578 (-)NCBICHM1_1
T2T-CHM13v2.01172,397,315 - 172,409,046 (-)NCBIT2T-CHM13v2.0
Tnfsf18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,322,221 - 161,333,903 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,322,224 - 161,332,859 (+)EnsemblGRCm39 Ensembl
GRCm381161,494,657 - 161,505,290 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,494,655 - 161,505,290 (+)EnsemblGRCm38mm10GRCm38
MGSCv371163,424,788 - 163,435,421 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361163,331,332 - 163,341,967 (+)NCBIMGSCv36mm8
Celera1163,943,104 - 163,953,733 (+)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map169.75NCBI
Tnfsf18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540613,391,162 - 13,402,479 (-)NCBIChiLan1.0ChiLan1.0
TNFSF18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2176,687,163 - 76,700,053 (+)NCBINHGRI_mPanPan1-v2
TNFSF18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1725,983,064 - 25,994,605 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl725,963,719 - 25,992,801 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha725,514,906 - 25,526,500 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0725,734,171 - 25,745,767 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl725,734,080 - 25,744,296 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1725,652,719 - 25,664,301 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0725,725,623 - 25,737,220 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0725,879,459 - 25,891,051 (+)NCBIUU_Cfam_GSD_1.0
Tnfsf18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934496,652,746 - 96,661,551 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648114,499,577 - 14,508,017 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648114,499,495 - 14,508,074 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFSF18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9115,448,973 - 115,460,950 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19115,447,438 - 115,460,649 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29127,140,943 - 127,151,861 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TNFSF18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12556,105,757 - 56,118,249 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2556,106,584 - 56,118,758 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605557,711,144 - 57,721,390 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfsf18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247718,711,017 - 8,722,539 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247718,711,093 - 8,722,518 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Tnfsf18
1049 total Variants

Predicted Target Of
Summary Value
Count of predictions:148
Count of miRNA genes:128
Interacting mature miRNAs:134
Transcripts:ENSRNOT00000039221
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 32 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133466346187525369Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)136906051977046890Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)136906051986800898Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)136906051986800898Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat

1 to 10 of 32 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 46 98 66 68 37 25 37 6 186 89 81 43 57 31



Ensembl Acc Id: ENSRNOT00000039221   ⟹   ENSRNOP00000035225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1373,831,252 - 73,843,169 (+)Ensembl
Rnor_6.0 Ensembl1379,378,733 - 79,388,498 (+)Ensembl
RefSeq Acc Id: NM_001398596   ⟹   NP_001385525
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81376,366,853 - 76,376,608 (+)NCBI
mRatBN7.21373,833,534 - 73,843,289 (+)NCBI
RefSeq Acc Id: XM_039091401   ⟹   XP_038947329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81376,366,790 - 76,440,673 (+)NCBI
mRatBN7.21373,833,478 - 73,907,249 (+)NCBI
Protein RefSeqs NP_001385525 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947329 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CTQ86173 (Get FASTA)   NCBI Sequence Viewer  
  EDM09414 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000035225
  ENSRNOP00000035225.4
Ensembl Acc Id: ENSRNOP00000035225   ⟸   ENSRNOT00000039221
RefSeq Acc Id: XP_038947329   ⟸   XM_039091401
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001385525   ⟸   NM_001398596
- UniProtKB: D4A3I1 (UniProtKB/TrEMBL),   A6ID83 (UniProtKB/TrEMBL)

Name Modeler Protein Id AA Range Protein Structure
AF-D4A3I1-F1-model_v2 AlphaFold D4A3I1 1-173 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13698938
Promoter ID:EPDNEW_R9458
Type:multiple initiation site
Name:Tnfsf18_1
Description:TNF superfamily member 18
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01379,378,733 - 79,378,793EPDNEW


1 to 15 of 15 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-17709 BioCyc
Ensembl Genes ENSRNOG00000026607 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000039221 ENTREZGENE
  ENSRNOT00000039221.6 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/TrEMBL
InterPro TNFSF18 UniProtKB/TrEMBL
  Tumour_necrosis_fac-like UniProtKB/TrEMBL
NCBI Gene 364031 ENTREZGENE
PANTHER PTHR15267 UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 18 UniProtKB/TrEMBL
PhenoGen Tnfsf18 PhenoGen
RatGTEx ENSRNOG00000026607 RatGTEx
Superfamily-SCOP TNF_like UniProtKB/TrEMBL
UniProt A6ID83 ENTREZGENE, UniProtKB/TrEMBL
  D4A3I1 ENTREZGENE, UniProtKB/TrEMBL
1 to 15 of 15 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-21 Tnfsf18  TNF superfamily member 18  Tnfsf18  tumor necrosis factor superfamily member 18  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-25 Tnfsf18  tumor necrosis factor superfamily member 18  Tnfsf18  tumor necrosis factor (ligand) superfamily, member 18  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Tnfsf18  tumor necrosis factor (ligand) superfamily, member 18   Tnfsf18_predicted  tumor necrosis factor (ligand) superfamily, member 18 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Tnfsf18_predicted  tumor necrosis factor (ligand) superfamily, member 18 (predicted)      Symbol and Name status set to approved 70820 APPROVED