Srprb (SRP receptor subunit beta) - Rat Genome Database

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Gene: Srprb (SRP receptor subunit beta) Rattus norvegicus
Analyze
Symbol: Srprb
Name: SRP receptor subunit beta
RGD ID: 1304698
Description: Enables ubiquitin protein ligase binding activity. Predicted to be involved in protein targeting to ER. Predicted to be located in cytoplasmic microtubule and membrane. Predicted to be part of signal recognition particle receptor complex. Orthologous to human SRPRB (SRP receptor subunit beta); INTERACTS WITH 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole; 6-propyl-2-thiouracil; amiodarone.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ab2-417; Ba1-667; Cc1-8; LOC300965; signal recognition particle receptor subunit beta; signal recognition particle receptor, B subunit; SR-beta; SRP receptor beta subunit
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,647,577 - 112,661,524 (-)NCBIGRCr8
mRatBN7.28103,768,685 - 103,782,632 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx8109,428,103 - 109,442,062 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,627,269 - 107,641,228 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,469,951 - 105,483,910 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,673,479 - 111,687,426 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08111,064,462 - 111,078,409 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48108,196,684 - 108,210,631 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18108,216,139 - 108,230,086 (-)NCBI
Celera8103,146,886 - 103,160,831 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
aristolochic acid A  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
buspirone  (EXP)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
clofibrate  (EXP)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
flutamide  (EXP)
fulvestrant  (ISO)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
methidathion  (ISO)
omeprazole  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (EXP)
propiconazole  (ISO)
resveratrol  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP)
Soman  (EXP)
tamoxifen  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tolcapone  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Pirh2 interacts with and ubiquitylates signal recognition particle receptor beta subunit. Abe K, etal., Biomed Res. 2008 Feb;29(1):53-60.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:19664239   PMID:22375059   PMID:23264731   PMID:25002582  


Genomics

Comparative Map Data
Srprb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,647,577 - 112,661,524 (-)NCBIGRCr8
mRatBN7.28103,768,685 - 103,782,632 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx8109,428,103 - 109,442,062 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,627,269 - 107,641,228 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,469,951 - 105,483,910 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,673,479 - 111,687,426 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08111,064,462 - 111,078,409 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48108,196,684 - 108,210,631 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18108,216,139 - 108,230,086 (-)NCBI
Celera8103,146,886 - 103,160,831 (-)NCBICelera
Cytogenetic Map8q32NCBI
SRPRB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383133,784,023 - 133,828,574 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3133,784,023 - 133,825,772 (+)EnsemblGRCh38hg38GRCh38
GRCh373133,502,867 - 133,547,418 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363135,007,367 - 135,022,213 (+)NCBINCBI36Build 36hg18NCBI36
Build 343135,007,374 - 135,022,221NCBI
Celera3131,929,996 - 131,966,138 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3130,882,540 - 130,918,525 (+)NCBIHuRef
CHM1_13133,466,291 - 133,504,281 (+)NCBICHM1_1
T2T-CHM13v2.03136,529,221 - 136,573,768 (+)NCBIT2T-CHM13v2.0
Srprb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399103,065,232 - 103,079,264 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9103,065,231 - 103,079,336 (-)EnsemblGRCm39 Ensembl
GRCm389103,188,033 - 103,202,065 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9103,188,032 - 103,202,137 (-)EnsemblGRCm38mm10GRCm38
MGSCv379103,090,363 - 103,104,395 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369103,046,183 - 103,060,215 (-)NCBIMGSCv36mm8
Celera9102,738,664 - 102,752,618 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map955.0NCBI
Srprb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555014,784,266 - 4,796,587 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555014,784,266 - 4,796,587 (-)NCBIChiLan1.0ChiLan1.0
SRPRB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22131,714,334 - 131,744,840 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13131,719,063 - 131,748,877 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03130,850,953 - 130,865,940 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13138,325,988 - 138,342,056 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3138,325,988 - 138,342,056 (+)Ensemblpanpan1.1panPan2
SRPRB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12330,687,508 - 30,711,275 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2330,687,554 - 30,710,245 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2330,666,628 - 30,690,423 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02331,207,919 - 31,231,735 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2331,207,938 - 31,232,693 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12330,901,725 - 30,925,521 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02330,959,521 - 30,983,300 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02331,207,112 - 31,230,923 (+)NCBIUU_Cfam_GSD_1.0
Srprb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560270,191,983 - 70,207,044 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365296,952,540 - 6,966,661 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365296,952,472 - 6,967,542 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRPRB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1374,975,677 - 75,010,212 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11374,976,030 - 75,010,200 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21382,474,463 - 82,508,621 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SRPRB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11556,545,201 - 56,580,591 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1556,544,391 - 56,560,045 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604129,526,995 - 29,563,179 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srprb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473010,114,281 - 10,133,794 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473010,114,870 - 10,131,833 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Srprb
52 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8102370617108923645Rat

Markers in Region
BE120985  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,782,833 - 103,783,024 (+)MAPPERmRatBN7.2
Rnor_6.08111,687,628 - 111,687,818NCBIRnor6.0
Rnor_5.08111,078,611 - 111,078,801UniSTSRnor5.0
RGSC_v3.48108,210,833 - 108,211,023UniSTSRGSC3.4
Celera8103,161,033 - 103,161,223UniSTS
RH 3.4 Map81156.3UniSTS
Cytogenetic Map8q32UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: NM_001013252   ⟹   NP_001013270
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,647,577 - 112,661,524 (-)NCBI
mRatBN7.28103,768,685 - 103,782,632 (-)NCBI
Rnor_6.08111,673,479 - 111,687,426 (-)NCBI
Rnor_5.08111,064,462 - 111,078,409 (-)NCBI
RGSC_v3.48108,196,684 - 108,210,631 (-)RGD
Celera8103,146,886 - 103,160,831 (-)RGD
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001013270   ⟸   NM_001013252
- UniProtKB: Q4FZX7 (UniProtKB/Swiss-Prot),   A6I2I7 (UniProtKB/TrEMBL)
- Sequence:

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4FZX7-F1-model_v2 AlphaFold Q4FZX7 1-269 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304698 AgrOrtholog
BioCyc Gene G2FUF-29333 BioCyc
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7324816 IMAGE-MGC_LOAD
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SRP_receptor_beta_su UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:300965 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:114584 IMAGE-MGC_LOAD
NCBI Gene 300965 ENTREZGENE
PANTHER ADP RIBOSYLATION FACTOR-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT BETA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SRPRB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Srprb PhenoGen
PROSITE ARF UniProtKB/TrEMBL
Superfamily-SCOP P-loop containing nucleoside triphosphate hydrolases UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A6I2I5_RAT UniProtKB/TrEMBL
  A6I2I6_RAT UniProtKB/TrEMBL
  A6I2I7 ENTREZGENE, UniProtKB/TrEMBL
  Q4FZX7 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-04 Srprb  SRP receptor subunit beta  Srprb  SRP receptor beta subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-25 Srprb  SRP receptor beta subunit  Srprb  signal recognition particle receptor, B subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Srprb  signal recognition particle receptor, B subunit  Srprb_predicted  signal recognition particle receptor, B subunit (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Srprb_predicted  signal recognition particle receptor, B subunit (predicted)      Symbol and Name status set to approved 70820 APPROVED