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Gene: Tnnt1 (troponin T1, slow skeletal type) Chinchilla lanigera

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Symbol:

Tnnt1

Name:

troponin T1, slow skeletal type

RGD ID:

9067309

Description:

ENCODES a protein that exhibits tropomyosin binding (ortholog); troponin T binding (ortholog); INVOLVED IN negative regulation of muscle contraction (ortholog); skeletal muscle contraction (ortholog); slow-twitch skeletal muscle fiber contraction (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH cardiomyopathy (ortholog); dilated cardiomyopathy (ortholog); dilated cardiomyopathy 2A (ortholog); FOUND IN troponin complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

troponin T type 1 (skeletal, slow); troponin T, slow skeletal muscle

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955567	1,043,026 - 1,055,039 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955567	1,039,625 - 1,050,581 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tnnt1	Chinchilla	cardiomyopathy		ISO	TNNT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Cardiomyopathies	ClinVar	PMID:24033266 more ...
Tnnt1	Chinchilla	dilated cardiomyopathy		ISO	TNNT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Dilated Cardiomyopathy and Recessive	ClinVar	PMID:18414213 more ...
Tnnt1	Chinchilla	dilated cardiomyopathy		ISO	TNNT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Dilated Cardiomyopathy and Recessive	ClinVar	PMID:18414213 more ...
Tnnt1	Chinchilla	dilated cardiomyopathy 2A		ISO	TNNT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Dilated cardiomyopathy 2A	ClinVar	PMID:24033266 more ...
Tnnt1	Chinchilla	familial hypertrophic cardiomyopathy		ISO	TNNT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Primary familial hypertrophic cardiomyopathy	ClinVar	PMID:24033266 more ...
Tnnt1	Chinchilla	familial restrictive cardiomyopathy 1		ISO	TNNT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Cardiomyopathy more ...	ClinVar	PMID:24033266 more ...
Tnnt1	Chinchilla	genetic disease		ISO	TNNT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:10952871 more ...
Tnnt1	Chinchilla	hypertrophic cardiomyopathy		ISO	TNNT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hypertrophic cardiomyopathy	ClinVar	PMID:18414213 more ...
Tnnt1	Chinchilla	hypertrophic cardiomyopathy 7		ISO	TNNT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hypertrophic cardiomyopathy 7	ClinVar	PMID:24033266 more ...
Tnnt1	Chinchilla	myopathy		ISO	TNNT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Myopathy	ClinVar
Tnnt1	Chinchilla	nemaline myopathy		ISO	TNNT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Nemaline Myopathy and Recessive	ClinVar	PMID:24033266 more ...
Tnnt1	Chinchilla	nemaline myopathy 5A		ISO	TNNT1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:10952871 more ...
Tnnt1	Chinchilla	nemaline myopathy 5A		ISO	TNNT1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:10952871 more ...
Tnnt1	Chinchilla	nemaline myopathy 5B		ISO	TNNT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Nemaline myopathy 5B more ...	ClinVar	PMID:25741868 more ...
Tnnt1	Chinchilla	nemaline myopathy 5C		ISO	TNNT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Nemaline myopathy 5C and autosomal dominant	ClinVar	PMID:14315666 more ...
Tnnt1	Chinchilla	primary ciliary dyskinesia		ISO	TNNT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Primary ciliary dyskinesia	ClinVar	PMID:22387996 more ...
Tnnt1	Chinchilla	restrictive cardiomyopathy		ISO	TNNT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Familial restrictive cardiomyopathy	ClinVar	PMID:18414213 more ...
Tnnt1	Chinchilla	Wolff-Parkinson-White syndrome		ISO	TNNT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Familial Hypertrophic Cardiomyopathy with Wolff-Parkinson-White Syndrome	ClinVar	PMID:18414213 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tnnt1	Chinchilla	nemaline myopathy 5A		ISO	TNNT1 (Homo sapiens)	7240710		OMIM
Tnnt1	Chinchilla	nemaline myopathy 5B		ISO	TNNT1 (Homo sapiens)	7240710		OMIM
Tnnt1	Chinchilla	nemaline myopathy 5C		ISO	TNNT1 (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tnnt1	Chinchilla	negative regulation of muscle contraction	involved_in	ISO	TNNT1 (Homo sapiens)	9068941	PMID:18032382	UniProt	PMID:18032382
Tnnt1	Chinchilla	skeletal muscle contraction	involved_in	ISO	TNNT1 (Homo sapiens)	9068941	PMID:10952871	UniProt	PMID:10952871
Tnnt1	Chinchilla	slow-twitch skeletal muscle fiber contraction		ISO	Tnnt1 (Rattus norvegicus)	9068941		RGD	PMID:15788488 and REF_RGD_ID:1599482
Tnnt1	Chinchilla	transition between fast and slow fiber	acts_upstream_of_or_within	ISO	Tnnt1 (Mus musculus)	9068941	PMID:18978355	MGI	PMID:18978355

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tnnt1	Chinchilla	troponin complex		ISO	Tnnt1 (Rattus norvegicus)	9068941		RGD	PMID:15788488 more ...
Tnnt1	Chinchilla	troponin complex	part_of	ISO	TNNT1 (Homo sapiens)	9068941	PMID:18032382	UniProt	PMID:18032382
Tnnt1	Chinchilla	troponin complex	part_of	ISO	TNNT1 (Homo sapiens)	9068941	PMID:15665378	UniProt	PMID:15665378

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tnnt1	Chinchilla	protein binding	enables	ISO	UniProtKB:O95751 more ...	9068941	PMID:31515488	IntAct	PMID:31515488
Tnnt1	Chinchilla	protein binding	enables	ISO	UniProtKB:P0C264 more ...	9068941	PMID:32296183	IntAct	PMID:32296183
Tnnt1	Chinchilla	protein binding	enables	ISO	UniProtKB:P09493	9068941	PMID:21516116	IntAct	PMID:21516116
Tnnt1	Chinchilla	protein binding	enables	ISO	UniProtKB:P06753 and UniProtKB:P09493-10	9068941	PMID:25910212	IntAct	PMID:25910212
Tnnt1	Chinchilla	protein binding	enables	ISO	UniProtKB:O95751 more ...	9068941	PMID:25416956	IntAct	PMID:25416956
Tnnt1	Chinchilla	tropomyosin binding	enables	ISO	TNNT1 (Homo sapiens)	9068941	PMID:15665378	UniProt	PMID:15665378
Tnnt1	Chinchilla	tropomyosin binding	enables	ISO	UniProtKB:P06753	9068941	PMID:35510366	UniProt	PMID:35510366
Tnnt1	Chinchilla	troponin T binding		ISO	Tnnt1 (Rattus norvegicus)	9068941		RGD	PMID:15788488 and REF_RGD_ID:1599482

Imported Annotations - SMPDB

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tnnt1	Chinchilla	acebutolol pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00296
Tnnt1	Chinchilla	adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00296
Tnnt1	Chinchilla	amiodarone pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00665
Tnnt1	Chinchilla	amlodipine pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00376
Tnnt1	Chinchilla	atenolol pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00298
Tnnt1	Chinchilla	betaxolol pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00299
Tnnt1	Chinchilla	bisoprolol pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00300
Tnnt1	Chinchilla	bupranolol drug pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00670
Tnnt1	Chinchilla	bupranolol pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00670
Tnnt1	Chinchilla	carvedilol pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00367
Tnnt1	Chinchilla	diltiazem pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00359
Tnnt1	Chinchilla	disopyramide pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00325
Tnnt1	Chinchilla	dobutamine pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00662
Tnnt1	Chinchilla	esmolol pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00301
Tnnt1	Chinchilla	flecainde pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00331
Tnnt1	Chinchilla	fosphenytoin pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00326
Tnnt1	Chinchilla	ibutilide pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00332
Tnnt1	Chinchilla	isoprenaline pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00663
Tnnt1	Chinchilla	isradipine pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00378
Tnnt1	Chinchilla	levobunolol pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00666
Tnnt1	Chinchilla	lidocaine pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00328
Tnnt1	Chinchilla	metoprolol pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00302
Tnnt1	Chinchilla	mexiletine pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00329
Tnnt1	Chinchilla	nadolol pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00303
Tnnt1	Chinchilla	nebivolol pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00366
Tnnt1	Chinchilla	nifedipine pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00379
Tnnt1	Chinchilla	nimodipine pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00380
Tnnt1	Chinchilla	nisoldipine pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00381
Tnnt1	Chinchilla	nitrendipine pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00382
Tnnt1	Chinchilla	penbutolol pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00305
Tnnt1	Chinchilla	phenytoin pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00327
Tnnt1	Chinchilla	pindolol pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00306
Tnnt1	Chinchilla	procainamide pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00324
Tnnt1	Chinchilla	propranolol pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00307
Tnnt1	Chinchilla	quinidine pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00323
Tnnt1	Chinchilla	sotalol pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00660
Tnnt1	Chinchilla	timolol pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00659
Tnnt1	Chinchilla	verapamil pharmacodynamics pathway		ISO	TNNT1 (Homo sapiens)	9068941		SMPDB	SMP:00375

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

PMID:22301074	PMID:30032202

Tnnt1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955567	1,043,026 - 1,055,039 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955567	1,039,625 - 1,050,581 (+)	NCBI	ChiLan1.0	ChiLan1.0

TNNT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	55,132,698 - 55,149,206 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	55,132,698 - 55,149,206 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	55,644,066 - 55,660,574 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	60,336,009 - 60,352,386 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	60,336,008 - 60,352,386	NCBI
Celera	19	52,683,099 - 52,701,800 (-)	NCBI		Celera
Cytogenetic Map	19	q13.42	NCBI
HuRef	19	51,967,104 - 51,981,532 (-)	NCBI		HuRef
CHM1_1	19	55,637,767 - 55,654,167 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	58,226,372 - 58,243,170 (-)	NCBI		T2T-CHM13v2.0

Tnnt1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	4,507,568 - 4,518,974 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	4,507,569 - 4,519,381 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	4,504,569 - 4,515,975 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	4,504,570 - 4,516,382 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	4,456,265 - 4,467,577 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	4,107,750 - 4,119,062 (-)	NCBI		MGSCv36	mm8
Celera	7	4,249,175 - 4,260,487 (-)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	2.6	NCBI

Tnnt1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	78,349,035 - 78,359,394 (+)	NCBI		GRCr8
mRatBN7.2	1	69,306,362 - 69,316,721 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	69,306,362 - 69,316,721 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	74,665,281 - 74,675,640 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	83,229,594 - 83,239,953 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	76,379,084 - 76,389,599 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	72,889,270 - 72,899,629 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	72,889,270 - 72,899,659 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	75,652,123 - 75,662,339 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	68,036,411 - 68,045,142 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	68,114,521 - 68,123,253 (+)	NCBI
Celera	1	67,811,420 - 67,821,558 (-)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

TNNT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	61,268,613 - 61,282,914 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	62,997,739 - 63,012,038 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	52,173,523 - 52,190,577 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	60,868,241 - 60,885,197 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	60,868,330 - 60,882,005 (-)	Ensembl	panpan1.1		panPan2

TNNT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	102,479,617 - 102,490,776 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	102,366,801 - 102,491,147 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	102,536,670 - 102,547,827 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	103,133,191 - 103,144,315 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	102,973,590 - 103,144,307 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	102,770,115 - 102,781,270 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	102,481,708 - 102,492,858 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	103,245,737 - 103,256,895 (+)	NCBI		UU_Cfam_GSD_1.0

Tnnt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	2,124,674 - 2,133,897 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936886	425,438 - 435,500 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936886	425,331 - 434,546 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TNNT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	59,347,582 - 59,365,284 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	59,351,445 - 59,365,584 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	54,300,086 - 54,314,541 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TNNT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	47,726,049 - 47,743,465 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	47,726,002 - 47,743,404 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	282,217 - 298,212 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tnnt1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	2,094,903 - 2,100,560 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624832	2,093,852 - 2,100,647 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005413353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005413354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013509279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013509280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01074455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01074456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000000944 ⟹ ENSCLAP00000000907

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955567	1,043,026 - 1,055,039 (+)	Ensembl

Ensembl Acc Id:

ENSCLAT00000000945 ⟹ ENSCLAP00000000908

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955567	1,044,283 - 1,050,487 (+)	Ensembl

Ensembl Acc Id:

ENSCLAT00000000946 ⟹ ENSCLAP00000000909

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955567	1,045,147 - 1,050,487 (+)	Ensembl

RefSeq Acc Id:

XM_005413353 ⟹ XP_005413410

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955567	1,043,320 - 1,050,581 (+)	NCBI

Sequence:

show sequence

CGCAGCGCCCCGGGGCCAGACAGACTTCCCTCCCGCTCTGAAGACCCAGCCCTAGGTCCCAGCAGGATGTCGGACACCGAGGAGCAGGAATATGAGGAGCAGGCTGAAGAGGAGGAGCCCGCCGAGGA
GGAGGAGGAAGCCCCGGAGGAGCCGGAGCCGGAGGCAGAGCGAGAAGAGGAGCGCCCCAAACCGAGCCGTCCGGTGGTGCCTCCCTTGATCCCGCCCAAGATCCCGGAAGGGGAGCGCGTGGACTTCG
ATGACATCCACCGGAAGCGCATGGAGAAGGACCTCCTGGAGCTGCAGACACTCATCGACGTGCACTTCGAGCAGCGCAAGAAGGAGGAGGAAGAGCTGGTGGCGCTGAAGGATCGCATCGAGCGGCGC
CGGGCGGAGAGGGCTGAGCAGCAGCGCTTCAGGACCGAGAAGGAGCGTGAGCGGCAGGCCAAGCTGGCGGAGGAGAAGATGCGGAAGGAGGAGGAGGAGGCCAAGAAGCGCGCGGAGGATGACGCCAA
GAAGAAGAAGGTGCTGTCCAACATGGGGGCCCACTTCGGGGGTTACCTGGTCAAGGCGGAGCAGAAGCGGGGCAAGCGGCAGACCGGGCGGGAGACGAAGCTGCGGATCCTTTCGGAGCGGAAGAAGC
CGCTGAACATCGACCACATGGGGGAGGAGCAGCTCAGGGAGAAGGCCCAGGAGCTGTCAGACTGGATCCACCAGCTGGAGTCTGAGAAGTTTGACCTGATGGCGAAGCTGAAGCAGCAGAAATATGAG
ATCAACGTTCTGTACAACCGCATCAGCCACGCGCAGAAGTTCCGGAAAGGCGCAGGAAAGGGCCGCGTTGGAGGCCGCTGGAAGTGAGGAAGCCAGGACGTGACCCCCTGGGGGACCCCGGGAGCTGG
CAGAGAGTTTGTCTCATCTGTAGCTTGAAATAAATGTCCCCTGGAGCACCTGC

hide sequence

RefSeq Acc Id:

XM_005413354 ⟹ XP_005413411

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955567	1,043,338 - 1,050,581 (+)	NCBI

Sequence:

show sequence

GACAGACTTCCCTCCCGCTCTGAAGACCCAGCCCTAGGTCCCAGCAGGATGTCGGACACCGAGG
AGCAGGAATATGAGGAGCAGGCTGAAGAAGAGGAGCGCCCCAAACCGAGCCGTCCGGTGGTGCCTCCCTTGATCCCGCCCAAGATCCCGGAAGGGGAGCGCGTGGACTTCGATGACATCCACCGGAAG
CGCATGGAGAAGGACCTCCTGGAGCTGCAGACACTCATCGACGTGCACTTCGAGCAGCGCAAGAAGGAGGAGGAAGAGCTGGTGGCGCTGAAGGATCGCATCGAGCGGCGCCGGGCGGAGAGGGCTGA
GCAGCAGCGCTTCAGGACCGAGAAGGAGCGTGAGCGGCAGGCCAAGCTGGCGGAGGAGAAGATGCGGAAGGAGGAGGAGGAGGCCAAGAAGCGCGCGGAGGATGACGCCAAGAAGAAGAAGGTGCTGT
CCAACATGGGGGCCCACTTCGGGGGTTACCTGGTCAAGGCGGAGCAGAAGCGGGGCAAGCGGCAGACCGGGCGGGAGACGAAGCTGCGGATCCTTTCGGAGCGGAAGAAGCCGCTGAACATCGACCAC
ATGGGGGAGGAGCAGCTCAGGGAGAAGGCCCAGGAGCTGTCAGACTGGATCCACCAGCTGGAGTCTGAGAAGTTTGACCTGATGGCGAAGCTGAAGCAGCAGAAATATGAGATCAACGTTCTGTACAA
CCGCATCAGCCACGCGCAGAAGTTCCGGAAAGGCGCAGGAAAGGGCCGCGTTGGAGGCCGCTGGAAGTGAGGAAGCCAGGACGTGACCCCCTGGGGGACCCCGGGAGCTGGCAGAGAGTTTGTCTCAT
CTGTAGCTTGAAATAAATGTCCCCTGGAGCACCTGC

hide sequence

RefSeq Acc Id:

XM_013509279 ⟹ XP_013364733

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955567	1,043,320 - 1,050,581 (+)	NCBI

Sequence:

show sequence

CGCAGCGCCCCGGGGCCAGACAGACTTCCCTCCCGCTCTGAAGACCCAGCCCTAGGTCCCAGCA
GGATGTCGGACACCGAGGAGCAGGAATATGAGGAGCAGGCTGAAGAGGAGGAGCCCGCCGAGGAGGAGGAGGAAGAAGAGGAGCGCCCCAAACCGAGCCGTCCGGTGGTGCCTCCCTTGATCCCGCCC
AAGATCCCGGAAGGGGAGCGCGTGGACTTCGATGACATCCACCGGAAGCGCATGGAGAAGGACCTCCTGGAGCTGCAGACACTCATCGACGTGCACTTCGAGCAGCGCAAGAAGGAGGAGGAAGAGCT
GGTGGCGCTGAAGGATCGCATCGAGCGGCGCCGGGCGGAGAGGGCTGAGCAGCAGCGCTTCAGGACCGAGAAGGAGCGTGAGCGGCAGGCCAAGCTGGCGGAGGAGAAGATGCGGAAGGAGGAGGAGG
AGGCCAAGAAGCGCGCGGAGGATGACGCCAAGAAGAAGAAGGTGCTGTCCAACATGGGGGCCCACTTCGGGGGTTACCTGGTCAAGGCGGAGCAGAAGCGGGGCAAGCGGCAGACCGGGCGGGAGACG
AAGCTGCGGATCCTTTCGGAGCGGAAGAAGCCGCTGAACATCGACCACATGGGGGAGGAGCAGCTCAGGGAGAAGGCCCAGGAGCTGTCAGACTGGATCCACCAGCTGGAGTCTGAGAAGTTTGACCT
GATGGCGAAGCTGAAGCAGCAGAAATATGAGATCAACGTTCTGTACAACCGCATCAGCCACGCGCAGAAGTTCCGGAAAGGCGCAGGAAAGGGCCGCGTTGGAGGCCGCTGGAAGTGAGGAAGCCAGG
ACGTGACCCCCTGGGGGACCCCGGGAGCTGGCAGAGAGTTTGTCTCATCTGTAGCTTGAAATAAATGTCCCCTGGAGCACCTGC

hide sequence

RefSeq Acc Id:

XM_013509280 ⟹ XP_013364734

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955567	1,039,625 - 1,050,581 (+)	NCBI

Sequence:

show sequence

GGCCCTGCTGGGAACCCGGGCCAAGGAGACCTTGGACCTACGGGCCCACCTCAAGCAGGTGAAGAAGGAGGACACCGAGAAGGTCCCAGCAGGATGTCGGACACCGAGGAGCAGGAATATGAGGAGCA
GGCTGAAGAGGAGGAGCCCGCCGAGGAGGAGGAGGAAGCCCCGGAGGAGCCGGAGCCGGAGGCAGAGCGAGAAGAGGAGCGCCCCAAACCGAGCCGTCCGGTGGTGCCTCCCTTGATCCCGCCCAAGA
TCCCGGAAGGGGAGCGCGTGGACTTCGATGACATCCACCGGAAGCGCATGGAGAAGGACCTCCTGGAGCTGCAGACACTCATCGACGTGCACTTCGAGCAGCGCAAGAAGGAGGAGGAAGAGCTGGTG
GCGCTGAAGGATCGCATCGAGCGGCGCCGGGCGGAGAGGGCTGAGCAGCAGCGCTTCAGGACCGAGAAGGAGCGTGAGCGGCAGGCCAAGCTGGCGGAGGAGAAGATGCGGAAGGAGGAGGAGGAGGC
CAAGAAGCGCGCGGAGGATGACGCCAAGAAGAAGAAGGTGCTGTCCAACATGGGGGCCCACTTCGGGGGTTACCTGGTCAAGGCGGAGCAGAAGCGGGGCAAGCGGCAGACCGGGCGGGAGACGAAGC
TGCGGATCCTTTCGGAGCGGAAGAAGCCGCTGAACATCGACCACATGGGGGAGGAGCAGCTCAGGGAGAAGGCCCAGGAGCTGTCAGACTGGATCCACCAGCTGGAGTCTGAGAAGTTTGACCTGATG
GCGAAGCTGAAGCAGCAGAAATATGAGATCAACGTTCTGTACAACCGCATCAGCCACGCGCAGAAGTTCCGGAAAGGCGCAGGAAAGGGCCGCGTTGGAGGCCGCTGGAAGTGAGGAAGCCAGGACGT
GACCCCCTGGGGGACCCCGGGAGCTGGCAGAGAGTTTGTCTCATCTGTAGCTTGAAATAAATGTCCCCTGGAGCACCTGC

hide sequence


Protein RefSeqs	XP_005413410	(Get FASTA)	NCBI Sequence Viewer
	XP_005413411	(Get FASTA)	NCBI Sequence Viewer
	XP_013364733	(Get FASTA)	NCBI Sequence Viewer
	XP_013364734	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000000907
	ENSCLAP00000000907.1
	ENSCLAP00000000908
	ENSCLAP00000000908.1
	ENSCLAP00000000909.1

RefSeq Acc Id:	XP_005413410 ⟸ XM_005413353
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2UJD8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDTEEQEYEEQAEEEEPAEEEEEAPEEPEPEAEREEERPKPSRPVVPPLIPPKIPEGERVDFDDIHRKRMEKDLLELQTLIDVHFEQRKKEEEELVALKDRIERRRAERAEQQRFRTEKERERQAKL AEEKMRKEEEEAKKRAEDDAKKKKVLSNMGAHFGGYLVKAEQKRGKRQTGRETKLRILSERKKPLNIDHMGEEQLREKAQELSDWIHQLESEKFDLMAKLKQQKYEINVLYNRISHAQKFRKGAGKGR VGGRWK hide sequence

RefSeq Acc Id:	XP_005413411 ⟸ XM_005413354
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2UJD8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDTEEQEYEEQAEEEERPKPSRPVVPPLIPPKIPEGERVDFDDIHRKRMEKDLLELQTLIDVH FEQRKKEEEELVALKDRIERRRAERAEQQRFRTEKERERQAKLAEEKMRKEEEEAKKRAEDDAKKKKVLSNMGAHFGGYLVKAEQKRGKRQTGRETKLRILSERKKPLNIDHMGEEQLREKAQELSDW IHQLESEKFDLMAKLKQQKYEINVLYNRISHAQKFRKGAGKGRVGGRWK hide sequence

RefSeq Acc Id:	XP_013364734 ⟸ XM_013509280
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2UJD8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDTEEQEYEEQAEEEEPAEEEEEAPEEPEPEAEREEERPKPSRPVVPPLIPPKIPEGERVDFD DIHRKRMEKDLLELQTLIDVHFEQRKKEEEELVALKDRIERRRAERAEQQRFRTEKERERQAKLAEEKMRKEEEEAKKRAEDDAKKKKVLSNMGAHFGGYLVKAEQKRGKRQTGRETKLRILSERKKP LNIDHMGEEQLREKAQELSDWIHQLESEKFDLMAKLKQQKYEINVLYNRISHAQKFRKGAGKGRVGGRWK hide sequence

RefSeq Acc Id:	XP_013364733 ⟸ XM_013509279
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2UH84 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDTEEQEYEEQAEEEEPAEEEEEEEERPKPSRPVVPPLIPPKIPEGERVDFDDIHRKRMEKDLLELQTLIDVHFEQRKKEEEELVALKDRIERRRAERAEQQRFRTEKERERQAKLAEEKMRKEEEE AKKRAEDDAKKKKVLSNMGAHFGGYLVKAEQKRGKRQTGRETKLRILSERKKPLNIDHMGEEQLREKAQELSDWIHQLESEKFDLMAKLKQQKYEINVLYNRISHAQKFRKGAGKGRVGGRWK hide sequence

Ensembl Acc Id:

ENSCLAP00000000908 ⟸ ENSCLAT00000000945

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000000706	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000000944	ENTREZGENE
	ENSCLAT00000000944.1	UniProtKB/TrEMBL
	ENSCLAT00000000945	ENTREZGENE
	ENSCLAT00000000945.1	UniProtKB/TrEMBL
	ENSCLAT00000000946.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.350	UniProtKB/TrEMBL
InterPro	TNNT	UniProtKB/TrEMBL
	Troponin	UniProtKB/TrEMBL
	Troponin_sf	UniProtKB/TrEMBL
NCBI Gene	Tnnt1	ENTREZGENE
PANTHER	PTHR11521	UniProtKB/TrEMBL
	TROPONIN T, SLOW SKELETAL MUSCLE	UniProtKB/TrEMBL
Pfam	Troponin	UniProtKB/TrEMBL
Superfamily-SCOP	SSF90250	UniProtKB/TrEMBL
UniProt	A0A8C2UH84	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2UJD8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2YID5_CHILA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Tnnt1	troponin T1, slow skeletal type		troponin T type 1 (skeletal, slow)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB