Nup93 (nucleoporin 93) - Rat Genome Database

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Gene: Nup93 (nucleoporin 93) Chinchilla lanigera
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Symbol: Nup93
Name: nucleoporin 93
RGD ID: 9060255
Description: ENCODES a protein that exhibits structural constituent of nuclear pore (ortholog); INVOLVED IN nuclear envelope organization (ortholog); nuclear pore complex assembly (ortholog); positive regulation of SMAD protein signal transduction (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN centrosome (ortholog); nuclear envelope (ortholog); nuclear membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear pore complex protein Nup93; nucleoporin 93kDa
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543314,407,962 - 14,535,500 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543314,408,079 - 14,533,292 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nup93
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543314,407,962 - 14,535,500 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543314,408,079 - 14,533,292 (+)NCBIChiLan1.0ChiLan1.0
NUP93
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381656,730,129 - 56,850,286 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1656,730,118 - 56,850,286 (+)EnsemblGRCh38hg38GRCh38
GRCh371656,764,041 - 56,884,198 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361655,321,608 - 55,436,178 (+)NCBINCBI36Build 36hg18NCBI36
Build 341655,321,607 - 55,436,177NCBI
Celera1641,261,349 - 41,377,957 (+)NCBICelera
Cytogenetic Map16q13NCBI
HuRef1642,633,146 - 42,748,366 (+)NCBIHuRef
CHM1_11658,170,944 - 58,286,883 (+)NCBICHM1_1
T2T-CHM13v2.01662,525,082 - 62,646,588 (+)NCBIT2T-CHM13v2.0
Nup93
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39894,941,203 - 95,043,858 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl894,941,192 - 95,043,855 (+)EnsemblGRCm39 Ensembl
GRCm38894,214,564 - 94,328,100 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl894,214,564 - 94,317,227 (+)EnsemblGRCm38mm10GRCm38
MGSCv37896,738,501 - 96,838,966 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36897,103,730 - 97,204,195 (+)NCBIMGSCv36mm8
Celera898,546,731 - 98,646,788 (+)NCBICelera
Cytogenetic Map8C5NCBI
cM Map846.4NCBI
Nup93
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81910,690,154 - 10,793,937 (-)NCBIGRCr8
mRatBN7.21910,684,214 - 10,788,009 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,682,075 - 10,788,026 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1910,647,235 - 10,750,757 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01911,414,073 - 11,517,597 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01910,701,063 - 10,804,589 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01911,159,769 - 11,263,980 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1911,159,774 - 11,263,980 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01911,137,500 - 11,238,898 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41911,124,681 - 11,223,870 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11911,129,511 - 11,228,696 (-)NCBI
Celera1910,571,493 - 10,674,188 (-)NCBICelera
Cytogenetic Map19p12NCBI
NUP93
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21866,203,555 - 66,316,812 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11672,121,827 - 72,237,502 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01637,007,481 - 37,122,785 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11656,140,546 - 56,255,561 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1656,140,546 - 56,255,561 (+)Ensemblpanpan1.1panPan2
NUP93
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,465,482 - 59,573,871 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,465,487 - 59,574,033 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha256,094,117 - 56,202,511 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0260,004,861 - 60,113,330 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl260,004,865 - 60,142,347 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1256,835,743 - 56,944,123 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0257,842,840 - 57,952,923 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0258,737,314 - 58,846,012 (-)NCBIUU_Cfam_GSD_1.0
Nup93
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934950,561,224 - 50,658,755 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364758,930,314 - 9,032,287 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364758,930,320 - 9,027,840 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP93
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl618,711,911 - 18,827,887 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1618,711,869 - 18,827,705 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NUP93
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1542,679,764 - 42,794,103 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl542,679,781 - 42,794,097 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604733,555,134 - 33,667,985 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup93
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474629,153,503 - 29,253,146 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474629,153,503 - 29,271,518 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000014586   ⟹   ENSCLAP00000014428
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543314,407,962 - 14,535,500 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000014587   ⟹   ENSCLAP00000014429
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543314,424,939 - 14,535,500 (+)Ensembl
RefSeq Acc Id: XM_005388358   ⟹   XP_005388415
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543314,408,079 - 14,533,292 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005388415 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000014428
  ENSCLAP00000014428.1
  ENSCLAP00000014429.1
RefSeq Acc Id: XP_005388415   ⟸   XM_005388358
- UniProtKB: A0A8C2VLP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000014428   ⟸   ENSCLAT00000014586
RefSeq Acc Id: ENSCLAP00000014429   ⟸   ENSCLAT00000014587


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009953 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014586 ENTREZGENE
  ENSCLAT00000014586.1 UniProtKB/TrEMBL
  ENSCLAT00000014587.1 UniProtKB/TrEMBL
InterPro Nucleoporin_int_Nup93/Nic96 UniProtKB/TrEMBL
NCBI Gene Nup93 ENTREZGENE
PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP93 UniProtKB/TrEMBL
  PTHR11225 UniProtKB/TrEMBL
Pfam Nic96 UniProtKB/TrEMBL
UniProt A0A8C2VLP4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Nup93  nucleoporin 93    nucleoporin 93kDa  Symbol and/or name change 5135510 APPROVED