Nup93 (nucleoporin 93) - Rat Genome Database

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Gene: Nup93 (nucleoporin 93) Mus musculus
Analyze
Symbol: Nup93
Name: nucleoporin 93
RGD ID: 1323030
MGI Page MGI
Description: Predicted to be a structural constituent of nuclear pore. Involved in positive regulation of SMAD protein signal transduction. Located in centrosome. Human ortholog(s) of this gene implicated in nephrotic syndrome type 12. Orthologous to human NUP93 (nucleoporin 93).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2410008G02Rik; 93 kDa nucleoporin; CBP-interacting protein 4; nuclear pore complex protein Nup93; nuclear pore complex protein Nup93-like; nucleoporin Nup93
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39894,941,203 - 95,043,858 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl894,941,192 - 95,043,855 (+)EnsemblGRCm39 Ensembl
GRCm38894,214,564 - 94,328,100 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl894,214,564 - 94,317,227 (+)EnsemblGRCm38mm10GRCm38
MGSCv37896,738,501 - 96,838,966 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36897,103,730 - 97,204,195 (+)NCBIMGSCv36mm8
Celera898,546,731 - 98,646,788 (+)NCBICelera
Cytogenetic Map8C5NCBI
cM Map846.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-chloropropane-1,2-diol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
alpha-pinene  (ISO)
amitrole  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cordycepin  (EXP)
coumarin  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
dicrotophos  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
epoxiconazole  (EXP)
fenamidone  (EXP)
fenthion  (EXP)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
hydrogen peroxide  (EXP)
ivermectin  (ISO)
methidathion  (EXP)
methimazole  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP)
PCB138  (EXP)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP)
propiconazole  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
sulfadimethoxine  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (ISO)
topotecan  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
vinclozolin  (ISO)
vitamin E  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12791264   PMID:12904583   PMID:14610273   PMID:14621295   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16969114   PMID:17967808   PMID:18799693   PMID:21565611   PMID:21873635   PMID:22083510   PMID:22794259   PMID:24457600   PMID:26167872   PMID:26296893   PMID:26590968  
PMID:26878725   PMID:28378742   PMID:30196744   PMID:30279523   PMID:30457570   PMID:31733835   PMID:31823782   PMID:32325033   PMID:32560809   PMID:36114006  


Genomics

Comparative Map Data
Nup93
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39894,941,203 - 95,043,858 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl894,941,192 - 95,043,855 (+)EnsemblGRCm39 Ensembl
GRCm38894,214,564 - 94,328,100 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl894,214,564 - 94,317,227 (+)EnsemblGRCm38mm10GRCm38
MGSCv37896,738,501 - 96,838,966 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36897,103,730 - 97,204,195 (+)NCBIMGSCv36mm8
Celera898,546,731 - 98,646,788 (+)NCBICelera
Cytogenetic Map8C5NCBI
cM Map846.4NCBI
NUP93
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381656,730,129 - 56,850,286 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1656,730,118 - 56,850,286 (+)EnsemblGRCh38hg38GRCh38
GRCh371656,764,041 - 56,884,198 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361655,321,608 - 55,436,178 (+)NCBINCBI36Build 36hg18NCBI36
Build 341655,321,607 - 55,436,177NCBI
Celera1641,261,349 - 41,377,957 (+)NCBICelera
Cytogenetic Map16q13NCBI
HuRef1642,633,146 - 42,748,366 (+)NCBIHuRef
CHM1_11658,170,944 - 58,286,883 (+)NCBICHM1_1
T2T-CHM13v2.01662,525,082 - 62,646,588 (+)NCBIT2T-CHM13v2.0
Nup93
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81910,690,154 - 10,793,937 (-)NCBIGRCr8
mRatBN7.21910,684,214 - 10,788,009 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,682,075 - 10,788,026 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1910,647,235 - 10,750,757 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01911,414,073 - 11,517,597 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01910,701,063 - 10,804,589 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01911,159,769 - 11,263,980 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1911,159,774 - 11,263,980 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01911,137,500 - 11,238,898 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41911,124,681 - 11,223,870 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11911,129,511 - 11,228,696 (-)NCBI
Celera1910,571,493 - 10,674,188 (-)NCBICelera
Cytogenetic Map19p12NCBI
Nup93
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543314,407,962 - 14,535,500 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543314,408,079 - 14,533,292 (+)NCBIChiLan1.0ChiLan1.0
NUP93
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21866,203,555 - 66,316,812 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11672,121,827 - 72,237,502 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01637,007,481 - 37,122,785 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11656,140,546 - 56,255,561 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1656,140,546 - 56,255,561 (+)Ensemblpanpan1.1panPan2
NUP93
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,465,482 - 59,573,871 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,465,487 - 59,574,033 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha256,094,117 - 56,202,511 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0260,004,861 - 60,113,330 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl260,004,865 - 60,142,347 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1256,835,743 - 56,944,123 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0257,842,840 - 57,952,923 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0258,737,314 - 58,846,012 (-)NCBIUU_Cfam_GSD_1.0
Nup93
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934950,561,224 - 50,658,755 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364758,930,314 - 9,032,287 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364758,930,320 - 9,027,840 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP93
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl618,711,911 - 18,827,887 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1618,711,869 - 18,827,705 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NUP93
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1542,679,764 - 42,794,103 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl542,679,781 - 42,794,097 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604733,555,134 - 33,667,985 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup93
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474629,153,503 - 29,253,146 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474629,153,503 - 29,271,518 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nup93
3559 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:242
Count of miRNA genes:145
Interacting mature miRNAs:152
Transcripts:ENSMUST00000079961, ENSMUST00000109547
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined872122809106123021Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
1301766Desp1_mdespair 1 (mouse)Not determined885486208119486373Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined886443553120443701Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined876402145110402251Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881819296115819296Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined886443553120443701Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86151347995513605Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)882345783116345783Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873929123107929226Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined876411976110412125Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined879245241113245331Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871829531105829637Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined886443553120443701Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC128663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ505051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000079961   ⟹   ENSMUSP00000078878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl894,941,192 - 95,041,488 (+)Ensembl
GRCm38.p6 Ensembl894,214,564 - 94,314,860 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109547   ⟹   ENSMUSP00000105174
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl894,954,289 - 95,041,694 (+)Ensembl
GRCm38.p6 Ensembl894,227,661 - 94,315,066 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211822   ⟹   ENSMUSP00000148458
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl894,995,234 - 95,043,855 (+)Ensembl
GRCm38.p6 Ensembl894,268,606 - 94,317,227 (+)Ensembl
RefSeq Acc Id: ENSMUST00000212039
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl894,941,205 - 94,970,680 (+)Ensembl
GRCm38.p6 Ensembl894,214,577 - 94,244,052 (+)Ensembl
RefSeq Acc Id: ENSMUST00000212062
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl894,941,234 - 95,019,444 (+)Ensembl
GRCm38.p6 Ensembl894,214,606 - 94,292,816 (+)Ensembl
RefSeq Acc Id: ENSMUST00000212167   ⟹   ENSMUSP00000148672
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl894,993,475 - 95,013,180 (+)Ensembl
GRCm38.p6 Ensembl894,266,847 - 94,286,552 (+)Ensembl
RefSeq Acc Id: ENSMUST00000212824   ⟹   ENSMUSP00000148700
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl894,941,229 - 95,041,694 (+)Ensembl
GRCm38.p6 Ensembl894,214,601 - 94,315,066 (+)Ensembl
RefSeq Acc Id: ENSMUST00000212984
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl895,022,635 - 95,030,387 (+)Ensembl
GRCm38.p6 Ensembl894,296,007 - 94,303,759 (+)Ensembl
RefSeq Acc Id: NM_001357266   ⟹   NP_001344195
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39894,941,203 - 95,041,698 (+)NCBI
GRCm38894,214,564 - 94,315,066 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357267   ⟹   NP_001344196
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39894,993,458 - 95,041,698 (+)NCBI
GRCm38894,266,847 - 94,315,066 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357268   ⟹   NP_001344197
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39894,995,293 - 95,043,858 (+)NCBI
GRCm38894,268,606 - 94,317,227 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001424438   ⟹   NP_001411367
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39894,941,203 - 95,041,698 (+)NCBI
RefSeq Acc Id: NM_001424439   ⟹   NP_001411368
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39894,941,203 - 95,041,698 (+)NCBI
RefSeq Acc Id: NM_001424440   ⟹   NP_001411369
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39894,941,203 - 95,041,698 (+)NCBI
RefSeq Acc Id: NM_001424441   ⟹   NP_001411370
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39894,941,203 - 95,041,698 (+)NCBI
RefSeq Acc Id: NM_001424442   ⟹   NP_001411371
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39894,941,203 - 95,041,698 (+)NCBI
RefSeq Acc Id: NM_001424443   ⟹   NP_001411372
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39894,941,203 - 95,041,698 (+)NCBI
RefSeq Acc Id: NM_001424444   ⟹   NP_001411373
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39894,941,203 - 95,041,698 (+)NCBI
RefSeq Acc Id: NM_001424445   ⟹   NP_001411374
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39894,941,203 - 95,041,698 (+)NCBI
RefSeq Acc Id: NM_001424446   ⟹   NP_001411375
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39894,941,203 - 95,041,698 (+)NCBI
RefSeq Acc Id: NM_001424447   ⟹   NP_001411376
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39894,995,293 - 95,041,698 (+)NCBI
RefSeq Acc Id: NM_172410   ⟹   NP_765998
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39894,941,203 - 95,041,698 (+)NCBI
GRCm38894,214,564 - 94,315,066 (+)NCBI
MGSCv37896,738,501 - 96,838,966 (+)RGD
Celera898,546,731 - 98,646,788 (+)RGD
cM Map8 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001344195 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344196 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344197 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411367 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411368 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411369 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411370 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411371 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411372 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411373 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411374 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411375 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411376 (Get FASTA)   NCBI Sequence Viewer  
  NP_765998 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH23140 (Get FASTA)   NCBI Sequence Viewer  
  BAC26158 (Get FASTA)   NCBI Sequence Viewer  
  BAC32337 (Get FASTA)   NCBI Sequence Viewer  
  BAC97865 (Get FASTA)   NCBI Sequence Viewer  
  BAE39254 (Get FASTA)   NCBI Sequence Viewer  
  BAE40970 (Get FASTA)   NCBI Sequence Viewer  
  BAE41309 (Get FASTA)   NCBI Sequence Viewer  
  CAD43733 (Get FASTA)   NCBI Sequence Viewer  
  EDL11120 (Get FASTA)   NCBI Sequence Viewer  
  EDL11121 (Get FASTA)   NCBI Sequence Viewer  
  EDL11122 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000078878
  ENSMUSP00000078878.7
  ENSMUSP00000105174.2
  ENSMUSP00000148458
  ENSMUSP00000148458.2
  ENSMUSP00000148672.2
  ENSMUSP00000148700
  ENSMUSP00000148700.2
GenBank Protein Q8BJ71 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_765998   ⟸   NM_172410
- Peptide Label: isoform 1
- UniProtKB: Q8K1R4 (UniProtKB/Swiss-Prot),   Q8BIK7 (UniProtKB/Swiss-Prot),   Q3TED9 (UniProtKB/Swiss-Prot),   Q8R592 (UniProtKB/Swiss-Prot),   Q8BJ71 (UniProtKB/Swiss-Prot),   Q3TFC8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001344195   ⟸   NM_001357266
- Peptide Label: isoform 1
- UniProtKB: Q8K1R4 (UniProtKB/Swiss-Prot),   Q8BJ71 (UniProtKB/Swiss-Prot),   Q8BIK7 (UniProtKB/Swiss-Prot),   Q3TED9 (UniProtKB/Swiss-Prot),   Q8R592 (UniProtKB/Swiss-Prot),   Q3TFC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344196   ⟸   NM_001357267
- Peptide Label: isoform 2
- UniProtKB: Q3TFC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344197   ⟸   NM_001357268
- Peptide Label: isoform 3
- UniProtKB: A0A1D5RLQ0 (UniProtKB/TrEMBL),   Q3TFC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000078878   ⟸   ENSMUST00000079961
RefSeq Acc Id: ENSMUSP00000148458   ⟸   ENSMUST00000211822
RefSeq Acc Id: ENSMUSP00000105174   ⟸   ENSMUST00000109547
RefSeq Acc Id: ENSMUSP00000148700   ⟸   ENSMUST00000212824
RefSeq Acc Id: ENSMUSP00000148672   ⟸   ENSMUST00000212167
RefSeq Acc Id: NP_001411368   ⟸   NM_001424439
- Peptide Label: isoform 5
- UniProtKB: Q3TFC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001411367   ⟸   NM_001424438
- Peptide Label: isoform 4
- UniProtKB: Q3TFC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001411369   ⟸   NM_001424440
- Peptide Label: isoform 5
- UniProtKB: Q3TFC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001411370   ⟸   NM_001424441
- Peptide Label: isoform 6
- UniProtKB: Q3TFC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001411371   ⟸   NM_001424442
- Peptide Label: isoform 7
- UniProtKB: Q3TFC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001411375   ⟸   NM_001424446
- Peptide Label: isoform 2
- UniProtKB: Q3TFC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001411373   ⟸   NM_001424444
- Peptide Label: isoform 2
- UniProtKB: Q3TFC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001411374   ⟸   NM_001424445
- Peptide Label: isoform 2
- UniProtKB: Q3TFC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001411372   ⟸   NM_001424443
- Peptide Label: isoform 2
- UniProtKB: Q3TFC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001411376   ⟸   NM_001424447
- Peptide Label: isoform 2
- UniProtKB: Q3TFC8 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BJ71-F1-model_v2 AlphaFold Q8BJ71 1-819 view protein structure

Promoters
RGD ID:8667893
Promoter ID:EPDNEW_M11978
Type:multiple initiation site
Name:Nup93_1
Description:Mus musculus nucleoporin 93 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38894,222,952 - 94,223,012EPDNEW
RGD ID:6843566
Promoter ID:MM_KWN:55321
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_172410,   UC009MVY.1,   UC009MWA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36896,738,131 - 96,738,682 (+)MPROMDB
RGD ID:6848333
Promoter ID:MM_ACW:48476
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NUP93.GSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36896,790,566 - 96,791,066 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919055 AgrOrtholog
Ensembl Genes ENSMUSG00000032939 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000079961 ENTREZGENE
  ENSMUST00000079961.14 UniProtKB/Swiss-Prot
  ENSMUST00000109547.2 UniProtKB/Swiss-Prot
  ENSMUST00000211822 ENTREZGENE
  ENSMUST00000211822.2 UniProtKB/TrEMBL
  ENSMUST00000212167.2 UniProtKB/TrEMBL
  ENSMUST00000212824 ENTREZGENE
  ENSMUST00000212824.2 UniProtKB/Swiss-Prot
InterPro Nucleoporin_int_Nup93/Nic96 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:71805 UniProtKB/Swiss-Prot
MGD MGI:1919055 ENTREZGENE
NCBI Gene 71805 ENTREZGENE
PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP93 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11225 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Nic96 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nup93 PhenoGen
UniProt A0A1D5RLQ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A1D5RM86_MOUSE UniProtKB/TrEMBL
  NUP93_MOUSE UniProtKB/Swiss-Prot
  Q3TED9 ENTREZGENE
  Q3TFC8 ENTREZGENE, UniProtKB/TrEMBL
  Q8BIK7 ENTREZGENE
  Q8BJ71 ENTREZGENE
  Q8K1R4 ENTREZGENE
  Q8R592 ENTREZGENE
UniProt Secondary Q3TED9 UniProtKB/Swiss-Prot
  Q8BIK7 UniProtKB/Swiss-Prot
  Q8K1R4 UniProtKB/Swiss-Prot
  Q8R592 UniProtKB/Swiss-Prot