Tnfrsf13c (TNF receptor superfamily member 13C) - Rat Genome Database

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Gene: Tnfrsf13c (TNF receptor superfamily member 13C) Chinchilla lanigera
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Symbol: Tnfrsf13c
Name: TNF receptor superfamily member 13C
RGD ID: 9035035
Description: INVOLVED IN B cell costimulation (ortholog); B cell homeostasis (ortholog); B cell proliferation (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Brain Injuries (ortholog); common variable immunodeficiency (ortholog); FOUND IN external side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor necrosis factor receptor superfamily member 13C; tumor necrosis factor receptor superfamily, member 13C
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541327,341,977 - 27,344,009 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tnfrsf13c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541327,341,977 - 27,344,009 (-)NCBIChiLan1.0ChiLan1.0
TNFRSF13C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382241,922,032 - 41,926,806 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2241,922,032 - 41,926,806 (-)EnsemblGRCh38hg38GRCh38
GRCh372242,318,036 - 42,322,810 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362240,650,982 - 40,652,728 (-)NCBINCBI36Build 36hg18NCBI36
Build 342240,645,535 - 40,647,282NCBI
Celera2226,127,271 - 26,129,056 (-)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2225,286,634 - 25,288,419 (-)NCBIHuRef
CHM1_12242,281,235 - 42,283,020 (-)NCBICHM1_1
T2T-CHM13v2.02242,400,895 - 42,405,666 (-)NCBIT2T-CHM13v2.0
Tnfrsf13c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391582,105,943 - 82,108,581 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1582,105,944 - 82,108,570 (-)EnsemblGRCm39 Ensembl
GRCm381582,221,742 - 82,224,380 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1582,221,743 - 82,224,369 (-)EnsemblGRCm38mm10GRCm38
MGSCv371582,052,174 - 82,054,766 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361582,048,999 - 82,051,591 (-)NCBIMGSCv36mm8
Celera1584,345,398 - 84,346,929 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.56NCBI
Tnfrsf13c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,616,139 - 115,618,647 (-)NCBIGRCr8
mRatBN7.27113,736,046 - 113,738,523 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7113,736,055 - 113,738,517 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07123,453,799 - 123,456,289 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7123,453,788 - 123,456,268 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07123,438,591 - 123,439,975 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47120,596,571 - 120,597,836 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7110,051,209 - 110,053,699 (-)NCBICelera
Cytogenetic Map7q34NCBI
TNFRSF13C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22351,751,774 - 51,758,115 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12254,449,100 - 54,457,327 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02222,816,504 - 22,819,584 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TNFRSF13C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11023,430,960 - 23,434,972 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1023,433,052 - 23,438,946 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1023,365,041 - 23,369,055 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01024,175,948 - 24,179,962 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1024,178,192 - 24,179,471 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11023,892,942 - 23,896,956 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01024,214,176 - 24,218,207 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01024,388,325 - 24,392,339 (+)NCBIUU_Cfam_GSD_1.0
Tnfrsf13c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049457,088,464 - 7,089,921 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493649298,878 - 101,920 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFRSF13C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl56,699,878 - 6,703,656 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.156,699,812 - 6,703,403 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TNFRSF13C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11924,457,381 - 24,459,438 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045100,952,971 - 100,954,833 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfrsf13c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247526,797,983 - 6,799,097 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247526,797,453 - 6,799,437 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005379376   ⟹   XP_005379433
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541327,341,977 - 27,343,802 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005379377   ⟹   XP_005379434
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541327,341,977 - 27,344,005 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511363   ⟹   XP_013366817
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541327,342,360 - 27,344,009 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005379433 (Get FASTA)   NCBI Sequence Viewer  
  XP_005379434 (Get FASTA)   NCBI Sequence Viewer  
  XP_013366817 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005379434   ⟸   XM_005379377
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005379433   ⟸   XM_005379376
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013366817   ⟸   XM_013511363
- Peptide Label: isoform X3
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Tnfrsf13c ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Tnfrsf13c  TNF receptor superfamily member 13C    tumor necrosis factor receptor superfamily, member 13C  Symbol and/or name change 5135510 APPROVED