Slc35b3 (solute carrier family 35 member B3) - Rat Genome Database

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Gene: Slc35b3 (solute carrier family 35 member B3) Chinchilla lanigera
Analyze
Symbol: Slc35b3
Name: solute carrier family 35 member B3
RGD ID: 9030185
Description: ENCODES a protein that exhibits 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity (ortholog); INVOLVED IN 5'-adenylyl sulfate transmembrane transport (ortholog); peptidyl-tyrosine sulfation (ortholog); FOUND IN Golgi membrane (ortholog); trans-Golgi network (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adenosine 3'-phospho 5'-phosphosulfate transporter 2; solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554655,599,728 - 5,621,031 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554655,599,728 - 5,621,031 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc35b3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554655,599,728 - 5,621,031 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554655,599,728 - 5,621,031 (+)NCBIChiLan1.0ChiLan1.0
SLC35B3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3868,411,435 - 8,435,567 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl68,411,435 - 8,435,561 (-)EnsemblGRCh38hg38GRCh38
GRCh3768,411,668 - 8,435,800 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3668,358,306 - 8,380,624 (-)NCBINCBI36Build 36hg18NCBI36
Build 3468,358,305 - 8,380,624NCBI
Celera69,642,577 - 9,665,073 (-)NCBICelera
Cytogenetic Map6p24.3NCBI
HuRef68,290,537 - 8,313,030 (-)NCBIHuRef
CHM1_168,415,413 - 8,437,924 (-)NCBICHM1_1
T2T-CHM13v2.068,280,719 - 8,304,851 (-)NCBIT2T-CHM13v2.0
Slc35b3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391339,116,112 - 39,144,855 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1339,116,112 - 39,144,851 (-)EnsemblGRCm39 Ensembl
GRCm381338,932,132 - 38,960,879 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1338,932,136 - 38,960,875 (-)EnsemblGRCm38mm10GRCm38
MGSCv371339,024,009 - 39,052,744 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361338,939,606 - 38,967,998 (-)NCBIMGSCv36mm8
Celera1340,055,504 - 40,084,226 (-)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1318.61NCBI
Slc35b3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81726,052,249 - 26,078,686 (+)NCBIGRCr8
mRatBN7.21725,846,590 - 25,873,115 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1725,846,748 - 25,872,557 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1725,714,852 - 25,741,043 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01727,318,430 - 27,344,622 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01725,662,913 - 25,689,103 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01726,478,777 - 26,505,225 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1726,478,315 - 26,504,738 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01728,399,829 - 28,427,084 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41731,910,886 - 31,938,409 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11731,913,843 - 31,940,009 (+)NCBI
Celera1725,490,154 - 25,516,553 (+)NCBICelera
Cytogenetic Map17p12NCBI
SLC35B3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2523,057,723 - 23,080,233 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1619,050,892 - 19,073,435 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v068,251,564 - 8,274,077 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.168,536,041 - 8,558,547 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl68,536,041 - 8,558,512 (-)Ensemblpanpan1.1panPan2
SLC35B3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1358,306,661 - 8,332,882 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl358,306,886 - 8,332,293 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha358,314,450 - 8,340,716 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0358,395,435 - 8,421,508 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl358,395,436 - 8,420,906 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1358,237,161 - 8,263,238 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0358,280,130 - 8,306,416 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0359,606,460 - 9,632,662 (-)NCBIUU_Cfam_GSD_1.0
Slc35b3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494615,950,529 - 15,973,175 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365344,220,274 - 4,242,314 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365344,219,557 - 4,242,152 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35B3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl75,579,152 - 5,606,531 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.175,577,410 - 5,606,575 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.275,785,506 - 5,810,271 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35B3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11763,719,442 - 63,744,216 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1763,720,612 - 63,744,258 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660448,411,428 - 8,436,207 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc35b3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475617,270,939 - 17,292,601 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475617,270,910 - 17,293,308 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000009770   ⟹   ENSCLAP00000009641
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554655,599,728 - 5,621,031 (+)Ensembl
RefSeq Acc Id: XM_005398841   ⟹   XP_005398898
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554655,599,774 - 5,621,031 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005398842   ⟹   XP_005398899
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554655,599,728 - 5,621,031 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005398843   ⟹   XP_005398900
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554655,599,766 - 5,621,031 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005398898 (Get FASTA)   NCBI Sequence Viewer  
  XP_005398899 (Get FASTA)   NCBI Sequence Viewer  
  XP_005398900 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000009641
  ENSCLAP00000009641.1
RefSeq Acc Id: XP_005398899   ⟸   XM_005398842
- Peptide Label: isoform X2
- UniProtKB: A0A8C2V6S3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005398900   ⟸   XM_005398843
- Peptide Label: isoform X2
- UniProtKB: A0A8C2V6S3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005398898   ⟸   XM_005398841
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSCLAP00000009641   ⟸   ENSCLAT00000009770


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006683 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000009770 ENTREZGENE
  ENSCLAT00000009770.1 UniProtKB/TrEMBL
InterPro UAA UniProtKB/TrEMBL
NCBI Gene Slc35b3 ENTREZGENE
PANTHER ADENOSINE 3'-PHOSPHO 5'-PHOSPHOSULFATE TRANSPORTER 2 UniProtKB/TrEMBL
  PTHR10778 UniProtKB/TrEMBL
Pfam UAA UniProtKB/TrEMBL
UniProt A0A8C2V6S3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc35b3  solute carrier family 35 member B3    solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3  Symbol and/or name change 5135510 APPROVED