Slc35b3 (solute carrier family 35 member B3)

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Gene: Slc35b3 (solute carrier family 35 member B3) Rattus norvegicus

Analyze

Symbol:

Slc35b3

Name:

solute carrier family 35 member B3

RGD ID:

1307183

Description:

Predicted to enable 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity. Predicted to be involved in 3'-phospho-5'-adenylyl sulfate transmembrane transport. Predicted to be active in Golgi membrane and endoplasmic reticulum membrane. Orthologous to human SLC35B3 (solute carrier family 35 member B3); INTERACTS WITH 2,4-dinitrotoluene; bisphenol A; fipronil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

adenosine 3'-phospho 5'-phosphosulfate transporter 2; LOC306866; solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3; solute carrier family 35, member B3

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC35B3 (solute carrier family 35 member B3)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Slc35b3 (solute carrier family 35, member B3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc35b3 (solute carrier family 35 member B3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC35B3 (solute carrier family 35 member B3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC35B3 (solute carrier family 35 member B3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc35b3 (solute carrier family 35 member B3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC35B3 (solute carrier family 35 member B3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC35B3 (solute carrier family 35 member B3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc35b3 (solute carrier family 35 member B3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SLC35B1 (solute carrier family 35 member B1)	HGNC	Inparanoid
Alliance orthologs ³
Homo sapiens (human):	SLC35B3 (solute carrier family 35 member B3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc35b3 (solute carrier family 35, member B3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc35b3 (solute carrier family 35 member B3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pst-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Papst2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	17	25,846,590 - 25,873,115 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	25,846,748 - 25,872,557 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	25,714,852 - 25,741,043 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	17	27,318,430 - 27,344,622 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	17	25,662,913 - 25,689,103 (+)	NCBI	Rnor_WKY
Rnor_6.0	17	26,478,777 - 26,505,225 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	26,478,315 - 26,504,738 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	28,399,829 - 28,427,084 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	31,910,886 - 31,938,409 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	31,913,843 - 31,940,009 (+)	NCBI
Celera	17	25,490,154 - 25,516,553 (+)	NCBI		Celera
Cytogenetic Map	17	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

fenthion (ISO)

fipronil (EXP)

folic acid (ISO)

gentamycin (EXP)

indole-3-methanol (EXP)

L-methionine (ISO)

methylmercury chloride (ISO)

paracetamol (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

quinolin-8-ol (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sunitinib (ISO)

trichostatin A (ISO)

tunicamycin (ISO)

valproic acid (ISO)

zidovudine (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

3'-phospho-5'-adenylyl sulfate transmembrane transport (IEA)

Cellular Component

Golgi membrane (ISO)

Molecular Function

3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:14651853

Genomics

Comparative Map Data

Slc35b3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	17	25,846,590 - 25,873,115 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	25,846,748 - 25,872,557 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	25,714,852 - 25,741,043 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	17	27,318,430 - 27,344,622 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	17	25,662,913 - 25,689,103 (+)	NCBI	Rnor_WKY
Rnor_6.0	17	26,478,777 - 26,505,225 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	26,478,315 - 26,504,738 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	28,399,829 - 28,427,084 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	31,910,886 - 31,938,409 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	31,913,843 - 31,940,009 (+)	NCBI
Celera	17	25,490,154 - 25,516,553 (+)	NCBI		Celera
Cytogenetic Map	17	p12	NCBI

SLC35B3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	8,411,435 - 8,435,567 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	6	8,411,435 - 8,435,561 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	8,411,668 - 8,435,800 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	8,358,306 - 8,380,624 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	8,358,305 - 8,380,624	NCBI
Celera	6	9,642,577 - 9,665,073 (-)	NCBI		Celera
Cytogenetic Map	6	p24.3	NCBI
HuRef	6	8,290,537 - 8,313,030 (-)	NCBI		HuRef
CHM1_1	6	8,415,413 - 8,437,924 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	8,280,719 - 8,304,851 (-)	NCBI		T2T-CHM13v2.0

Slc35b3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	39,116,108 - 39,144,855 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	39,116,112 - 39,144,851 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	38,932,132 - 38,960,879 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	38,932,136 - 38,960,875 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	39,024,009 - 39,052,744 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	38,939,606 - 38,967,998 (-)	NCBI		MGSCv36	mm8
Celera	13	40,055,504 - 40,084,226 (-)	NCBI		Celera
Cytogenetic Map	13	A3.3	NCBI

Slc35b3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955465	5,599,728 - 5,621,031 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955465	5,599,728 - 5,621,031 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC35B3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	6	8,536,041 - 8,558,547 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	8,536,041 - 8,558,512 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	6	8,251,564 - 8,274,077 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

SLC35B3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	8,306,661 - 8,332,882 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	8,306,886 - 8,332,293 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	8,314,450 - 8,340,716 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	8,395,435 - 8,421,508 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	35	8,395,436 - 8,420,906 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	35	8,237,161 - 8,263,238 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	8,280,130 - 8,306,416 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	9,606,460 - 9,632,662 (-)	NCBI		UU_Cfam_GSD_1.0

Slc35b3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	15,950,529 - 15,973,175 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936534	4,220,274 - 4,242,314 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936534	4,219,557 - 4,242,152 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC35B3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	5,579,152 - 5,606,531 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	5,577,410 - 5,606,575 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	5,785,506 - 5,810,271 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC35B3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	63,719,442 - 63,744,216 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	63,720,612 - 63,744,258 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	8,411,428 - 8,436,207 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc35b3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624756	17,270,939 - 17,292,601 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624756	17,270,910 - 17,293,308 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc35b3
191 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	16
Count of miRNA genes:	16
Interacting mature miRNAs:	16
Transcripts:	ENSRNOT00000021669
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10401807	Kidm52	Kidney mass QTL 52			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	1	31701463	Rat
70184	BpQTLcluster14	Blood pressure QTL cluster 14	3.38		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	1	31990913	Rat
631207	Niddm41	Non-insulin dependent diabetes mellitus QTL 41			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	1	37830672	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	60781592	Rat
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	69599340	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	69599340	Rat
1300123	Bp194	Blood pressure QTL 194	2.82		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	2115149	34551001	Rat
631499	Stl1	Serum triglyceride level QTL 1	3.6		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	3271398	27389946	Rat
1354613	Kidm14	Kidney mass QTL 14	6.2		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	17	4299130	35837242	Rat
1354596	Bw32	Body weight QTL 32	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	17	4299130	60781592	Rat
1354630	Cm34	Cardiac mass QTL 34	8.7		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	4299130	69599340	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	4299130	69599340	Rat
1354651	Lmblg2	Limb length QTL 2	6		tibia length (VT:0004357)	tibia length (CMO:0000450)	17	4299130	69599340	Rat
2293648	Bmd31	Bone mineral density QTL 31	4.5	0.0001	femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	17	4354487	27028127	Rat
2293664	Bmd28	Bone mineral density QTL 28	5.1	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	17	4354487	27028127	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4528038	49528038	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4528038	49528038	Rat
2303561	Bw91	Body weight QTL 91	2		body mass (VT:0001259)	body weight (CMO:0000012)	17	8868462	53868462	Rat
2300002	Iddm36	Insulin dependent diabetes mellitus QTL 36	1.98		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	9991286	40540197	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15330613	55836425	Rat
1354640	Scl32	Serum cholesterol level QTL 32	5.4		blood HDL cholesterol amount (VT:0000184)	blood high density lipoprotein cholesterol level (CMO:0000052)	17	15781592	60781592	Rat
1354659	Scl68	Serum cholesterol level QTL 68	3.9		blood VLDL cholesterol amount (VT:0005144)	blood very low density lipoprotein cholesterol level (CMO:0000648)	17	15781592	60781592	Rat
7394837	Memor18	Memory QTL 18			exploratory behavior trait (VT:0010471)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	17	18640182	63640182	Rat
1354628	Stl13	Serum triglyceride level QTL 13	3.8		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	21293039	60781592	Rat
70157	Niddm32	Non-insulin dependent diabetes mellitus QTL 32	4.34		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	22454924	50909196	Rat
61394	Bp8	Blood pressure QTL 8	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	23080567	59555013	Rat
7488966	Bp370	Blood pressure QTL 370		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	57246843	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23653184	68653184	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23653184	68653184	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23653184	68653184	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23653184	68653184	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	68653184	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23653184	70974005	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	24599340	69599340	Rat

Markers in Region

AU048489

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	25,848,519 - 25,848,728 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	26,480,633 - 26,480,841	NCBI	Rnor6.0
Rnor_5.0	17	28,401,673 - 28,401,881	UniSTS	Rnor5.0
RGSC_v3.4	17	31,912,646 - 31,912,854	UniSTS	RGSC3.4
Celera	17	25,492,012 - 25,492,220	UniSTS
Cytogenetic Map	17	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3		20	5	19	5			58	35	38	11
Low		43	37	36		36	8	11	16		3		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001063451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003751664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003752960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_225253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005495896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005495897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005495898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005495899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005495900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005495901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_596708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_598111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000021669 ⟹ ENSRNOP00000021670

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	25,846,748 - 25,872,557 (+)	Ensembl
Rnor_6.0 Ensembl	17	26,478,315 - 26,504,738 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112405 ⟹ ENSRNOP00000089959

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	25,846,890 - 25,872,557 (+)	Ensembl

RefSeq Acc Id:

XM_003751664 ⟹ XP_003751712

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,825 - 25,873,115 (+)	NCBI
Rnor_6.0	17	26,478,971 - 26,505,225 (+)	NCBI
Rnor_5.0	17	28,399,829 - 28,427,084 (+)	NCBI

Sequence:

show sequence

GCAAAAAGACGCATAGGCGGAAGTGGCGCGAGGTGTCCGGCCTGTGGAGACCTTCCGGGAAGGT
GGCGGCCGAGGTGGCGGTCGAGAGAGCAGGACCGGAGACAGGTGGATGCGGAGGAGGCCCAGCC
AGCAAGACGGGGCCCAGCAGTGGAGAAGAGCAGAGACAAGGTTGCAGGCCTTGAATGCGGCAAA
GCAGAAACCATGGACCTCAAGTTCAACAACTCCAGGAAGTATGTCTCCATCACTGTGCCCTCCA
AAACCCAGACAATGTCGCCACACATCAAGTCGGTTGAGGACGTCGTGGTGCTGGGCGTGAACCT
CAGCAGGTTTAAGAAGCTCACACAGTTTCTCATATGTGTGGCTGGAGTTTTTGTGTTTTACCTA
ATTTATGGATACTTACAGGAGTTGATATTTTCAATGGAAGGCTTTAAGCCTTACGGCTGGTACC
TTACTTTAGTACAGTTTGCATTTTACTCTGTATTTGGCCTAATAGAACTCCAGCTCACTCAGGA
CAAAAGGAGAAGAATACCAGGAAAAACCTACATGATAATAGCTTTTCTAACTGTGGGTACTATG
GGCTTATCAAACACTTCCTTGGGCTACCTGAATTACCCAACCCAAGTCATCTTCAAGTGCTGCA
AACTGATTCCTGTTATGCTAGGAGGAGTTTTTATTCAAGGAAAGAGGTACAACCTTGCAGACGT
GTCCGCTGCAGTGTGCATGAGCCTTGGCCTGATCTGGTTTACCCTTGCTGACAGCACAATTGCA
CCAAACTTTAATCTGACAGGTGTGATGCTTATCTCCCTGGCACTGTGTGCAGATGCTGTCATTG
GGAACGTTCAGGAGAAAGCTATGAAACTGCACAATGCTTCCAACTCCGAGATGGTTTTGTATTC
GTACTCAATCGGTTTTGTGTACATTCTGTTGGGATTGTCATGCACCAGTGGACTGGGTCCTGCA
CTGGCATTTTGTTCAAAGAACCCTGTTCGGACTTATGGCTATGCCTTCCTGTTTTCCCTCACTG
GTTACTTTGGAATCTCCTTTGTTCTGGCCCTCATTAAAATCTTTGGTGCTCTTCTGGCTGTAAC
AGTGACAACAGGACGAAAAGCAATGACCATCGTCCTGTCCTTTCTGTTCTTTGCTAAGCCATTC
ACATTTCAGTATATATGGTCTGGCTTGCTAGTTGTCCTTGGCATATTTCTGAATGTTTACAGCA
AAAATATGGATAAAATAAGATTGCCCTCGGTGTACAGTGTGATAAAGAAAGCCATGGACATGAA
AAAGTCAAGAACGTTGGCACAGACTGTGTAGGAACTGTGTTCGCCTATGTAAAATAAAAGTCTG
AGGGAACAATCATTAATCAACTCACTTTCCAAAGGCTTGTGGTAAAACCAAAGGATCTGAAGGC
TGCTGTCGTCTGAGCAGGTCGTACTCTCGGTGGTTCCTCGGCATCTGCCTCTACAGAACACACA
CTTTTGATCAGCTCCAAAACGATCAAGAGCCCACACCTAGGACATTTTGCAATAAAGTCAGTAT
GAAGGAAAGTGCTTCCTAGCTGTCCTGAACATTTCACTGGAAGTGGACCGTGTTGCAAGACTGA
TTGGCAATCCGTCCGGCCTGCAGCACGGTGCCGTGTAGTAGCACTGTTTGTCTCCATTCCGTTT
CGGTGGTGTTATTTAAATTCTTCTCTGTTATAAGAGTAACTGATGATTTGAAGTTTAGAGAAAA
TAGCATTCATTTATAAATAAAATTATCCTGTGATTTTTTTTAAATGGCGTTTTAATAAAATTTG
TTATTGAGGAGAATGGAGACAGGAAGAAGGGCTAATGTACACTTTAAAACATGGGTTTTTAAAG
TTCAGAGAAAATAGCATTCATTTATAAATAAAGTTATCCTGTGATTTTTTTAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006253850 ⟹ XP_006253912

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,869 - 25,873,115 (+)	NCBI
Rnor_6.0	17	26,479,055 - 26,505,225 (+)	NCBI
Rnor_5.0	17	28,399,829 - 28,427,084 (+)	NCBI

Sequence:

show sequence

AGAGAGCAGGACCGGAGACAGGTGGATGCGGAGGAGGTGACAGCGGCTGAGCTGGGAGGGGGCC
TTGCCGCGCGGTCAGGCGTCGTTAGGCAGCACTCGGGCCCAGCCAGCAAGACGGGGCCCAGCAG
TGGAGAAGAGCAGAGACAAGGTTGCAGGCCTTGAATGCGGCAAAGCAGAAACCATGGACCTCAA
GTTCAACAACTCCAGGAAGTATGTCTCCATCACTGTGCCCTCCAAAACCCAGACAATGTCGCCA
CACATCAAGTCGGTTGAGGACGTCGTGGTGCTGGGCGTGAACCTCAGCAGGTTTAAGAAGCTCA
CACAGTTTCTCATATGTGTGGCTGGAGTTTTTGTGTTTTACCTAATTTATGGATACTTACAGGA
GTTGATATTTTCAATGGAAGGCTTTAAGCCTTACGGCTGGTACCTTACTTTAGTACAGTTTGCA
TTTTACTCTGTATTTGGCCTAATAGAACTCCAGCTCACTCAGGACAAAAGGAGAAGAATACCAG
GAAAAACCTACATGATAATAGCTTTTCTAACTGTGGGTACTATGGGCTTATCAAACACTTCCTT
GGGCTACCTGAATTACCCAACCCAAGTCATCTTCAAGTGCTGCAAACTGATTCCTGTTATGCTA
GGAGGAGTTTTTATTCAAGGAAAGAGGTACAACCTTGCAGACGTGTCCGCTGCAGTGTGCATGA
GCCTTGGCCTGATCTGGTTTACCCTTGCTGACAGCACAATTGCACCAAACTTTAATCTGACAGG
TGTGATGCTTATCTCCCTGGCACTGTGTGCAGATGCTGTCATTGGGAACGTTCAGGAGAAAGCT
ATGAAACTGCACAATGCTTCCAACTCCGAGATGGTTTTGTATTCGTACTCAATCGGTTTTGTGT
ACATTCTGTTGGGATTGTCATGCACCAGTGGACTGGGTCCTGCACTGGCATTTTGTTCAAAGAA
CCCTGTTCGGACTTATGGCTATGCCTTCCTGTTTTCCCTCACTGGTTACTTTGGAATCTCCTTT
GTTCTGGCCCTCATTAAAATCTTTGGTGCTCTTCTGGCTGTAACAGTGACAACAGGACGAAAAG
CAATGACCATCGTCCTGTCCTTTCTGTTCTTTGCTAAGCCATTCACATTTCAGTATATATGGTC
TGGCTTGCTAGTTGTCCTTGGCATATTTCTGAATGTTTACAGCAAAAATATGGATAAAATAAGA
TTGCCCTCGGTGTACAGTGTGATAAAGAAAGCCATGGACATGAAAAAGTCAAGAACGTTGGCAC
AGACTGTGTAGGAACTGTGTTCGCCTATGTAAAATAAAAGTCTGAGGGAACAATCATTAATCAA
CTCACTTTCCAAAGGCTTGTGGTAAAACCAAAGGATCTGAAGGCTGCTGTCGTCTGAGCAGGTC
GTACTCTCGGTGGTTCCTCGGCATCTGCCTCTACAGAACACACACTTTTGATCAGCTCCAAAAC
GATCAAGAGCCCACACCTAGGACATTTTGCAATAAAGTCAGTATGAAGGAAAGTGCTTCCTAGC
TGTCCTGAACATTTCACTGGAAGTGGACCGTGTTGCAAGACTGATTGGCAATCCGTCCGGCCTG
CAGCACGGTGCCGTGTAGTAGCACTGTTTGTCTCCATTCCGTTTCGGTGGTGTTATTTAAATTC
TTCTCTGTTATAAGAGTAACTGATGATTTGAAGTTTAGAGAAAATAGCATTCATTTATAAATAA
AATTATCCTGTGATTTTTTTTAAATGGCGTTTTAATAAAATTTGTTATTGAGGAGAATGGAGAC
AGGAAGAAGGGCTAATGTACACTTTAAAACATGGGTTTTTAAAGTTCAGAGAAAATAGCATTCA
TTTATAAATAAAGTTATCCTGTGATTTTTTTAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006253852 ⟹ XP_006253914

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,591 - 25,872,502 (+)	NCBI
Rnor_6.0	17	26,478,777 - 26,504,563 (+)	NCBI
Rnor_5.0	17	28,399,829 - 28,427,084 (+)	NCBI

Sequence:

show sequence

GCTGCTTAGATCCGGTTCGAACATTCTAAACTTGGTCTCCTTCCCACGCCTCGGCTAACGATCT
CCTTAAGTCAACTGGGACGCAGACTCTACCAGATGGACAGGACCCAACCTCAGAATACGGAGGA
GCATGCGCAAGAGGCCCAGCCAGCAAGACGGGGCCCAGCAGTGGAGAAGAGCAGAGACAAGGTT
GCAGGCCTTGAATGCGGCAAAGCAGAAACCATGGACCTCAAGTTCAACAACTCCAGGAAGTATG
TCTCCATCACTGTGCCCTCCAAAACCCAGACAATGTCGCCACACATCAAGTCGGTTGAGGACGT
CGTGGTGCTGGGCGTGAACCTCAGCAGGTTTAAGAAGCTCACACAGTTTCTCATATGTGTGGCT
GGAGTTTTTGTGTTTTACCTAATTTATGGATACTTACAGGAGTTGATATTTTCAATGGAAGGCT
TTAAGCCTTACGGCTGGTACCTTACTTTAGTACAGTTTGCATTTTACTCTGTATTTGGCCTAAT
AGAACTCCAGCTCACTCAGGACAAAAGGAGAAGAATACCAGGAAAAACCTACATGATAATAGCT
TTTCTAACTGTGGGTACTATGGGCTTATCAAACACTTCCTTGGGCTACCTGAATTACCCAACCC
AAGTCATCTTCAAGTGCTGCAAACTGATTCCTGTTATGCTAGGAGGAGTTTTTATTCAAGGAAA
GAGGTACAACCTTGCAGACGTGTCCGCTGCAGTGTGCATGAGCCTTGGCCTGATCTGGTTTACC
CTTGCTGACAGCACAATTGCACCAAACTTTAATCTGACAGGTGTGATGCTTATCTCCCTGGCAC
TGTGTGCAGATGCTGTCATTGGGAACGTTCAGGAGAAAGCTATGAAACTGCACAATGCTTCCAA
CTCCGAGATGGTTTTGTATTCGTACTCAATCGGTTTTGTGTACATTCTGTTGGGATTGTCATGC
ACCAGTGGACTGGGTCCTGCACTGGCATTTTGTTCAAAGAACCCTGTTCGGACTTATGGCTATG
CCTTCCTGTTTTCCCTCACTGGTTACTTTGGAATCTCCTTTGTTCTGGCCCTCATTAAAATCTT
TGGTGCTCTTCTGGCTGTAACAGTGACAACAGGACGAAAAGCAATGACCATCGTCCTGTCCTTT
CTGTTCTTTGCTAAGCCATTCACATTTCAGTGGTCCTGGGGTGTATGAGGAAAGCTAACTACGC
AGGCCAGAAAGACCAAACAGGTATATATGGTCTGGCTTGCTAGTTGTCCTTGGCATATTTCTGA
ATGTTTACAGCAAAAATATGGATAAAATAAGATTGCCCTCGGTGTACA

hide sequence

RefSeq Acc Id:

XM_006253853 ⟹ XP_006253915

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,591 - 25,873,115 (+)	NCBI
Rnor_6.0	17	26,478,777 - 26,503,128 (+)	NCBI
Rnor_5.0	17	28,399,829 - 28,427,084 (+)	NCBI

Sequence:

show sequence

GCTGCTTAGATCCGGTTCGAACATTCTAAACTTGGTCTCCTTCCCACGCCTCGGCTAACGATCT
CCTTAAGTCAACTGGGACGCAGACTCTACCAGATGGACAGGACCCAACCTCAGAATACGGAGGA
GCATGCGCAAGAGGCCCAGCCAGCAAGACGGGGCCCAGCAGTGGAGAAGAGCAGAGACAAGGTT
GCAGGCCTTGAATGCGGCAAAGCAGAAACCATGGACCTCAAGTTCAACAACTCCAGGAAGTATG
TCTCCATCACTGTGCCCTCCAAAACCCAGACAATGTCGCCACACATCAAGTCGGTTGAGGACGT
CGTGGTGCTGGGCGTGAACCTCAGCAGGTTTAAGAAGCTCACACAGTTTCTCATATGTGTGGCT
GGAGTTTTTGTGTTTTACCTAATTTATGGATACTTACAGGAGTTGATATTTTCAATGGAAGGCT
TTAAGCCTTACGGCTGGTACCTTACTTTAGTACAGTTTGCATTTTACTCTGTATTTGGCCTAAT
AGAACTCCAGCTCACTCAGGACAAAAGGAGAAGAATACCAGGAAAAACCTACATGATAATAGCT
TTTCTAACTGTGGGTACTATGGGCTTATCAAACACTTCCTTGGGCTACCTGAATTACCCAACCC
AAGTCATCTTCAAGTGCTGCAAACTGATTCCTGTTATGCTAGGAGGAGTTTTTATTCAAGGAAA
GAGGTACAACCTTGCAGACGTGTCCGCTGCAGTGTGCATGAGCCTTGGCCTGATCTGGTTTACC
CTTGCTGACAGCACAATTGCACCAAACTTTAATCTGACAGGTGTGATGCTTATCTCCCTGGCAC
TGTGTGCAGATGCTGTCATTGGGAACGTTCAGGAGAAAGCTATGAAACTGCACAATGCTTCCAA
CTCCGAGATGGTTTTGTATTCGTACTCAATCGGTTTTGTGTACATTCTGTTGGGATTGTCATGC
ACCAGTGGACTGGGTCCTGCACTGGCATTTTGTTCAAAGAACCCTGTTCGGACTTATGGCTATG
CCTTCCTGTTTTCCCTCACTGGTTACTTTGGAATCTCCTTTGTTCTGGCCCTCATTAAAATCTT
TGGTGCTCTTCTGGCTGTAACAGCAGTGATGAGGATGTCATTGTCCAGCCTGTAGAGGACTGAA
GGTTGCCTTTGATGTATTTGGAGAGATGGGGAGCAGAGTGGGAGGAACCAGTGACTGCTGCATC
GTTTCCCAGAGCTGTAGATGCACACCGGCTTCCATGATAGAGGCAGAAAGGTTTTACTGTCTAA
TAAAAGGCAGAGGAAGGAATAGCTAACACAGAGCCCTTCCTGTGTGCTAGACACCATTTTGGGT
GAGTCCTAACCAGCTGGCACCATATGCACAGATAACGTGAGTATGGAGAGGTAAAGCAGCTCAC
GTGACAGCCTGCTGGAGTCGGGGTTCAGGCAGCACCCCGGCTCCATGCTGCTGTCTTCACCGTG
CTCCCTTGGTTAGGCCTCACTACCCTCCCTACCATCACAGCTTCCTGCCAGGCGGCTGCACGGA
GTCTGAGAATTTACAAGACATACAGTCCTCCCTCTGTGGAAACTTTCTAGGATGCTGCACTCCT
CAAAACAACACAGCTACCCATATTTTCCTGGCCACAGCCTAAGTCACATGACCACACCTAAGTA
TAGGGAAGACTTCTGACATGTGTGCCCAGAACAAGTTCTTCAGTCACTCACGCTTGAATGTCAA
GTGCAAGGAGCAGGAAGGAATCTGTGAGACAAGGTCTGGGACTGAGAAAAGCAGTGGGAGGGTA
GAACGCTAGCATGGAGAGCTGTGTGGCTCCTCTTCTGTTTGCACTGAATTGGACAGTCTCAGGC
CTTACGGCAGAGGTTGATGGGTAATACCCAGAGTGGGAAGAAGAGTTAATACAAGTGTATAAAG
AGCAAGACTGTCACAACTACTGTCCTATCCACAGAGGTCACCATGCCTAAATCCTGTAAGTCAC
TGTAGTGAGCATGCCTGGAATCTCAATGGGATGGAGGTCAGAGCAGGATGAGCAAAACATGGCA
AGACCTGTCTCAGAAACAGACAGAATATCTGGGTACTAATGAACCTTCCACTATTTTAAAAGGA
TAACTGTAGGCATAAATTTTTTGTACCCTAATTTAAATAAGGGTTCAACCTCTTCTGTAGCCCA
CCGCCCAGCAGAGGTAGTAGAAGGGAAAGTTTAAGGCTATGGGGGAAGTGGACCTGGTCAGCCA
TAGTTCTTTGGGGACAAGCTCCGTCTTCTTGGGCAGCAGTTCAGTCCTGTAGCAAACACCAGTT
GAGATTCAGCAGCTGCAGACCAGTCCTCTAGGTAGGCAGACCCCAAGCAGCTGAAGAATCCTGA
AGAAAGCACTAGGCTTGCCCACCTGCCTGAGGTGAGACCACAGAAACGGCAAGCTGCTTTAGGA
AGCTTACGAGCAGTTCTTGGGCGAGTTTCTCTCAGGGGCAGCATTACCACAAGCTGAGCTCAAC
AACGCTATGTAAGGCGAACCAATACATGCTTGTCGTTAGTGAAGCAGAGAAACCAAACCAAGGC
TCAGTGCTTGTCCCCCACTGTGGGATCATAGTCCTACTCCTTCATCAAGTGTCCTTTCCTGTGT
CTGCTGTATCCACACATCCTTTCACCTGGTCTGCCTCAGGAAAACAGTCTTTGGAGTGTTTGCT
TTAGCAAGACATCCTTTCACCTGTGTGCCCCAGGAAAATACCATTTGATGTAACCAACTTGCCA
AAGAACTGGAAGTTCCCACTTCAGATAACCCTTGCTCTACCCAGTAATTTCTTATACTGGAAAG
CCTGTGCTGAGGCAGCTGATGAACACTTACTACAGTTGTACACAGACATTTGATGGATCAACGC
CAGTTCTCCAAACCTTTACTTCTGTGGCAGCATGAATTTGGTTGGTTGGTTGTATTGTTTCTGG
TATCTTGTCATATACAGAGCTATAAATATTTGTAGACAAATGGTTTCCAGATATTACCGCGGCA
GTAAGATGCATCTAACTCTTTTCCCTGCAGTGACAACAGGACGAAAAGCAATGACCATCGTCCT
GTCCTTTCTGTTCTTTGCTAAGCCATTCACATTTCAGTAAGTACTTTGTAATGTAAGGGTCTCA
AAGTTAGATACTGGATTTCATATTTTGTGTTAAACAGCAGTATTTTCTAACTTTTACTTTATGT
TAATTTATGTTAATATGTGTTAGCCTATTTTCCTCTACAAAGAATTCTATTCATCCTAATCTAT
CTACTAAGTGCCTTTTGATAGTTTAAGAATCTGTGGACATCATTTTATATACTTAAATTGACCA
GCTAAAGCCCAGTGGAAATGTGGTCTTGTTAGCAAGTGACTGCATGAGAAGGAAGTGTATGACA
GATGCAGAGTGGGTAAAAGGTACACATCAGTGTGACTGACTGGTAGTGGGGTGTGTGCACCAGT
GTGACCAAGTGGGAGTGAGGTATATGGTCCAGTGTGACTGACTGTTAATGAAGTGAGTATGTCA
ATGTGCTGATGAGAGTGGAGTGTCAGATACAGGATGACTGACTGACTGCGTGTTCCTCATGGCA
GTGAGAATGAGTAGTATGTGTGTGTTGAATAAATTGTTTTTCTTTCCCACTTGTATATATGTAA
ATTATGTTTAAAATTCATGCGTGTACATTTTTTGTTTATAGCTTCTTTCCAGAGCAATAAACAA

hide sequence

RefSeq Acc Id:

XM_006253854 ⟹ XP_006253916

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,592 - 25,873,115 (+)	NCBI
Rnor_6.0	17	26,478,777 - 26,503,128 (+)	NCBI
Rnor_5.0	17	28,399,829 - 28,427,084 (+)	NCBI

Sequence:

show sequence

GCTGCTTAGATCCGGTTCGAACATTCTAAACTTGGTCTCCTTCCCACGCCTCGGCTAACGATCT
CCTTAAGTCAACTGGGACGCAGACTCTACCAGATGGACAGGACCCAACCTCAGAATACGGAGGA
GCATGCGCAAGAGGCCCAGCCAGCAAGACGGGGCCCAGCAGTGGAGAAGAGCAGAGACAAGGTT
GCAGGCCTTGAATGCGGCAAAGCAGAAACCATGGACCTCAAGTTCAACAACTCCAGGAAGTATG
TCTCCATCACTGTGCCCTCCAAAACCCAGACAATGTCGCCACACATCAAGTCGGTTGAGGACGT
CGTGGTGCTGGGCGTGAACCTCAGCAGGTTTAAGAAGCTCACACAGTTTCTCATATGTGTGGCT
GGAGTTTTTGTGTTTTACCTAATTTATGGATACTTACAGGAGTTGATATTTTCAATGGAAGGCT
TTAAGCCTTACGGCTGGTACCTTACTTTAGTACAGTTTGCATTTTACTCTGTATTTGGCCTAAT
AGAACTCCAGCTCACTCAGGACAAAAGGAGAAGAATACCAGGAAAAACCTACATGATAATAGCT
TTTCTAACTGTGGGTACTATGGGCTTATCAAACACTTCCTTGGGCTACCTGAATTACCCAACCC
AAGTCATCTTCAAGTGCTGCAAACTGATTCCTGTTATGCTAGGAGGAGTTTTTATTCAAGGAAA
GAGGTACAACCTTGCAGACGTGTCCGCTGCAGTGTGCATGAGCCTTGGCCTGATCTGGTTTACC
CTTGCTGACAGCACAATTGCACCAAACTTTAATCTGACAGGTGTGATGCTTATCTCCCTGGCAC
TGTGTGCAGATGCTGTCATTGGGAACGTTCAGGAGAAAGCTATGAAACTGCACAATGCTTCCAA
CTCCGAGATGGTTTTGTATTCGTACTCAATCGGTTTTGTGTACATTCTGTTGGGATTGTCATGC
ACCAGTGGACTGGGTCCTGCACTGGCATTTTGTTCAAAGAACCCTGTTCGGACTTATGGCTATG
CCTTCCTGTTTTCCCTCACTGGTTACTTTGGAATCTCCTTTGTTCTGGCCCTCATTAAAATCTT
TGGTGCTCTTCTGGCTGTAACAGTGATGAGGATGTCATTGTCCAGCCTGTAGAGGACTGAAGGT
TGCCTTTGATGTATTTGGAGAGATGGGGAGCAGAGTGGGAGGAACCAGTGACTGCTGCATCGTT
TCCCAGAGCTGTAGATGCACACCGGCTTCCATGATAGAGGCAGAAAGGTTTTACTGTCTAATAA
AAGGCAGAGGAAGGAATAGCTAACACAGAGCCCTTCCTGTGTGCTAGACACCATTTTGGGTGAG
TCCTAACCAGCTGGCACCATATGCACAGATAACGTGAGTATGGAGAGGTAAAGCAGCTCACGTG
ACAGCCTGCTGGAGTCGGGGTTCAGGCAGCACCCCGGCTCCATGCTGCTGTCTTCACCGTGCTC
CCTTGGTTAGGCCTCACTACCCTCCCTACCATCACAGCTTCCTGCCAGGCGGCTGCACGGAGTC
TGAGAATTTACAAGACATACAGTCCTCCCTCTGTGGAAACTTTCTAGGATGCTGCACTCCTCAA
AACAACACAGCTACCCATATTTTCCTGGCCACAGCCTAAGTCACATGACCACACCTAAGTATAG
GGAAGACTTCTGACATGTGTGCCCAGAACAAGTTCTTCAGTCACTCACGCTTGAATGTCAAGTG
CAAGGAGCAGGAAGGAATCTGTGAGACAAGGTCTGGGACTGAGAAAAGCAGTGGGAGGGTAGAA
CGCTAGCATGGAGAGCTGTGTGGCTCCTCTTCTGTTTGCACTGAATTGGACAGTCTCAGGCCTT
ACGGCAGAGGTTGATGGGTAATACCCAGAGTGGGAAGAAGAGTTAATACAAGTGTATAAAGAGC
AAGACTGTCACAACTACTGTCCTATCCACAGAGGTCACCATGCCTAAATCCTGTAAGTCACTGT
AGTGAGCATGCCTGGAATCTCAATGGGATGGAGGTCAGAGCAGGATGAGCAAAACATGGCAAGA
CCTGTCTCAGAAACAGACAGAATATCTGGGTACTAATGAACCTTCCACTATTTTAAAAGGATAA
CTGTAGGCATAAATTTTTTGTACCCTAATTTAAATAAGGGTTCAACCTCTTCTGTAGCCCACCG
CCCAGCAGAGGTAGTAGAAGGGAAAGTTTAAGGCTATGGGGGAAGTGGACCTGGTCAGCCATAG
TTCTTTGGGGACAAGCTCCGTCTTCTTGGGCAGCAGTTCAGTCCTGTAGCAAACACCAGTTGAG
ATTCAGCAGCTGCAGACCAGTCCTCTAGGTAGGCAGACCCCAAGCAGCTGAAGAATCCTGAAGA
AAGCACTAGGCTTGCCCACCTGCCTGAGGTGAGACCACAGAAACGGCAAGCTGCTTTAGGAAGC
TTACGAGCAGTTCTTGGGCGAGTTTCTCTCAGGGGCAGCATTACCACAAGCTGAGCTCAACAAC
GCTATGTAAGGCGAACCAATACATGCTTGTCGTTAGTGAAGCAGAGAAACCAAACCAAGGCTCA
GTGCTTGTCCCCCACTGTGGGATCATAGTCCTACTCCTTCATCAAGTGTCCTTTCCTGTGTCTG
CTGTATCCACACATCCTTTCACCTGGTCTGCCTCAGGAAAACAGTCTTTGGAGTGTTTGCTTTA
GCAAGACATCCTTTCACCTGTGTGCCCCAGGAAAATACCATTTGATGTAACCAACTTGCCAAAG
AACTGGAAGTTCCCACTTCAGATAACCCTTGCTCTACCCAGTAATTTCTTATACTGGAAAGCCT
GTGCTGAGGCAGCTGATGAACACTTACTACAGTTGTACACAGACATTTGATGGATCAACGCCAG
TTCTCCAAACCTTTACTTCTGTGGCAGCATGAATTTGGTTGGTTGGTTGTATTGTTTCTGGTAT
CTTGTCATATACAGAGCTATAAATATTTGTAGACAAATGGTTTCCAGATATTACCGCGGCAGTA
AGATGCATCTAACTCTTTTCCCTGCAGTGACAACAGGACGAAAAGCAATGACCATCGTCCTGTC
CTTTCTGTTCTTTGCTAAGCCATTCACATTTCAGTAAGTACTTTGTAATGTAAGGGTCTCAAAG
TTAGATACTGGATTTCATATTTTGTGTTAAACAGCAGTATTTTCTAACTTTTACTTTATGTTAA
TTTATGTTAATATGTGTTAGCCTATTTTCCTCTACAAAGAATTCTATTCATCCTAATCTATCTA
CTAAGTGCCTTTTGATAGTTTAAGAATCTGTGGACATCATTTTATATACTTAAATTGACCAGCT
AAAGCCCAGTGGAAATGTGGTCTTGTTAGCAAGTGACTGCATGAGAAGGAAGTGTATGACAGAT
GCAGAGTGGGTAAAAGGTACACATCAGTGTGACTGACTGGTAGTGGGGTGTGTGCACCAGTGTG
ACCAAGTGGGAGTGAGGTATATGGTCCAGTGTGACTGACTGTTAATGAAGTGAGTATGTCAATG
TGCTGATGAGAGTGGAGTGTCAGATACAGGATGACTGACTGACTGCGTGTTCCTCATGGCAGTG
AGAATGAGTAGTATGTGTGTGTTGAATAAATTGTTTTTCTTTCCCACTTGTATATATGTAAATT
ATGTTTAAAATTCATGCGTGTACATTTTTTGTTTATAGCTTCTTTCCAGAGCAATAAACAA

hide sequence

RefSeq Acc Id:

XM_006253855 ⟹ XP_006253917

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,847,054 - 25,873,115 (+)	NCBI
Rnor_6.0	17	26,479,183 - 26,505,225 (+)	NCBI
Rnor_5.0	17	28,399,829 - 28,427,084 (+)	NCBI

Sequence:

show sequence

AGGTGTCGGACGCCGCCGTCGGAGTTGTCAGGGGTAGCAGGGGCGCGCGCTTCCAGGAAGAGCA
TCCTCCCCTCCTGGCCTGAGAACCCCAGCCCGCACTCCTGTAGCCTGCTCTCCGTGCTCAGAGA
CTCGGTCTCTCGGATTCCCTTGACTGTGTTTGCAGTTCAGAGCCACTTCCGGGCCCAGCCAGCA
AGACGGGGCCCAGCAGTGGAGAAGAGCAGAGACAAGGTTGCAGGCCTTGAATGCGGCAAAGCAG
AAACCATGGACCTCAAGTTCAACAACTCCAGGAAGTATGTCTCCATCACTGTGCCCTCCAAAAC
CCAGACAATGTCGCCACACATCAAGTCGGTTGAGGACGTCGTGGTGCTGGGCGTGAACCTCAGC
AGGTTTAAGAAGCTCACACAGTTTCTCATATGTGTGGCTGGAGTTTTTGTGTTTTACCTAATTT
ATGGATACTTACAGGAGTTGATATTTTCAATGGAAGGCTTTAAGCCTTACGGCTGGTACCTTAC
TTTAGTACAGTTTGCATTTTACTCTGTATTTGGCCTAATAGAACTCCAGCTCACTCAGGACAAA
AGGAGAAGAATACCAGGAAAAACCTACATGATAATAGCTTTTCTAACTGTGGGTACTATGGGCT
TATCAAACACTTCCTTGGGCTACCTGAATTACCCAACCCAAGTCATCTTCAAGTGCTGCAAACT
GATTCCTGTTATGCTAGGAGGAGTTTTTATTCAAGGAAAGAGGTACAACCTTGCAGACGTGTCC
GCTGCAGTGTGCATGAGCCTTGGCCTGATCTGGTTTACCCTTGCTGACAGCACAATTGCACCAA
ACTTTAATCTGACAGGTGTGATGCTTATCTCCCTGGCACTGTGTGCAGATGCTGTCATTGGGAA
CGTTCAGGAGAAAGCTATGAAACTGCACAATGCTTCCAACTCCGAGATGGTTTTGTATTCGTAC
TCAATCGGTTTTGTGTACATTCTGTTGGGATTGTCATGCACCAGTGGACTGGGTCCTGCACTGG
CATTTTGTTCAAAGAACCCTGTTCGGACTTATGGCTATGCCTTCCTGTTTTCCCTCACTGGTTA
CTTTGGAATCTCCTTTGTTCTGGCCCTCATTAAAATCTTTGGTGCTCTTCTGGCTGTAACAGTG
ACAACAGGACGAAAAGCAATGACCATCGTCCTGTCCTTTCTGTTCTTTGCTAAGCCATTCACAT
TTCAGTATATATGGTCTGGCTTGCTAGTTGTCCTTGGCATATTTCTGAATGTTTACAGCAAAAA
TATGGATAAAATAAGATTGCCCTCGGTGTACAGTGTGATAAAGAAAGCCATGGACATGAAAAAG
TCAAGAACGTTGGCACAGACTGTGTAGGAACTGTGTTCGCCTATGTAAAATAAAAGTCTGAGGG
AACAATCATTAATCAACTCACTTTCCAAAGGCTTGTGGTAAAACCAAAGGATCTGAAGGCTGCT
GTCGTCTGAGCAGGTCGTACTCTCGGTGGTTCCTCGGCATCTGCCTCTACAGAACACACACTTT
TGATCAGCTCCAAAACGATCAAGAGCCCACACCTAGGACATTTTGCAATAAAGTCAGTATGAAG
GAAAGTGCTTCCTAGCTGTCCTGAACATTTCACTGGAAGTGGACCGTGTTGCAAGACTGATTGG
CAATCCGTCCGGCCTGCAGCACGGTGCCGTGTAGTAGCACTGTTTGTCTCCATTCCGTTTCGGT
GGTGTTATTTAAATTCTTCTCTGTTATAAGAGTAACTGATGATTTGAAGTTTAGAGAAAATAGC
ATTCATTTATAAATAAAATTATCCTGTGATTTTTTTTAAATGGCGTTTTAATAAAATTTGTTAT
TGAGGAGAATGGAGACAGGAAGAAGGGCTAATGTACACTTTAAAACATGGGTTTTTAAAGTTCA
GAGAAAATAGCATTCATTTATAAATAAAGTTATCCTGTGATTTTTTTAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006253856 ⟹ XP_006253918

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,825 - 25,873,115 (+)	NCBI
Rnor_6.0	17	26,478,969 - 26,505,225 (+)	NCBI
Rnor_5.0	17	28,399,829 - 28,427,084 (+)	NCBI

Sequence:

show sequence

GCGCAAAAAGACGCATAGGCGGAAGTGGCGCGAGGTGTCCGGCCTGTGGAGACCTTCCGGGAAG
GTGGCGGCCGAGGTGGCGGTCGAGAGAGCAGGACCGGAGACAGGCCCAGCCAGCAAGACGGGGC
CCAGCAGTGGAGAAGAGCAGAGACAAGGTTGCAGGCCTTGAATGCGGCAAAGCAGAAACCATGG
ACCTCAAGTTCAACAACTCCAGGAAGTATGTCTCCATCACTGTGCCCTCCAAAACCCAGACAAT
GTCGCCACACATCAAGTCGGTTGAGGACGTCGTGGTGCTGGGCGTGAACCTCAGCAGGTTTAAG
AAGCTCACACAGTTTCTCATATGTGTGGCTGGAGTTTTTGTGTTTTACCTAATTTATGGATACT
TACAGGAGTTGATATTTTCAATGGAAGGCTTTAAGCCTTACGGCTGGTACCTTACTTTAGTACA
GTTTGCATTTTACTCTGTATTTGGCCTAATAGAACTCCAGCTCACTCAGGACAAAAGGAGAAGA
ATACCAGGAAAAACCTACATGATAATAGCTTTTCTAACTGTGGGTACTATGGGCTTATCAAACA
CTTCCTTGGGCTACCTGAATTACCCAACCCAAGTCATCTTCAAGTGCTGCAAACTGATTCCTGT
TATGCTAGGAGGAGTTTTTATTCAAGGAAAGAGGTACAACCTTGCAGACGTGTCCGCTGCAGTG
TGCATGAGCCTTGGCCTGATCTGGTTTACCCTTGCTGACAGCACAATTGCACCAAACTTTAATC
TGACAGGTGTGATGCTTATCTCCCTGGCACTGTGTGCAGATGCTGTCATTGGGAACGTTCAGGA
GAAAGCTATGAAACTGCACAATGCTTCCAACTCCGAGATGGTTTTGTATTCGTACTCAATCGGT
TTTGTGTACATTCTGTTGGGATTGTCATGCACCAGTGGACTGGGTCCTGCACTGGCATTTTGTT
CAAAGAACCCTGTTCGGACTTATGGCTATGCCTTCCTGTTTTCCCTCACTGGTTACTTTGGAAT
CTCCTTTGTTCTGGCCCTCATTAAAATCTTTGGTGCTCTTCTGGCTGTAACAGTGACAACAGGA
CGAAAAGCAATGACCATCGTCCTGTCCTTTCTGTTCTTTGCTAAGCCATTCACATTTCAGTATA
TATGGTCTGGCTTGCTAGTTGTCCTTGGCATATTTCTGAATGTTTACAGCAAAAATATGGATAA
AATAAGATTGCCCTCGGTGTACAGTGTGATAAAGAAAGCCATGGACATGAAAAAGTCAAGAACG
TTGGCACAGACTGTGTAGGAACTGTGTTCGCCTATGTAAAATAAAAGTCTGAGGGAACAATCAT
TAATCAACTCACTTTCCAAAGGCTTGTGGTAAAACCAAAGGATCTGAAGGCTGCTGTCGTCTGA
GCAGGTCGTACTCTCGGTGGTTCCTCGGCATCTGCCTCTACAGAACACACACTTTTGATCAGCT
CCAAAACGATCAAGAGCCCACACCTAGGACATTTTGCAATAAAGTCAGTATGAAGGAAAGTGCT
TCCTAGCTGTCCTGAACATTTCACTGGAAGTGGACCGTGTTGCAAGACTGATTGGCAATCCGTC
CGGCCTGCAGCACGGTGCCGTGTAGTAGCACTGTTTGTCTCCATTCCGTTTCGGTGGTGTTATT
TAAATTCTTCTCTGTTATAAGAGTAACTGATGATTTGAAGTTTAGAGAAAATAGCATTCATTTA
TAAATAAAATTATCCTGTGATTTTTTTTAAATGGCGTTTTAATAAAATTTGTTATTGAGGAGAA
TGGAGACAGGAAGAAGGGCTAATGTACACTTTAAAACATGGGTTTTTAAAGTTCAGAGAAAATA
GCATTCATTTATAAATAAAGTTATCCTGTGATTTTTTTAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039096462 ⟹ XP_038952390

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,591 - 25,873,115 (+)	NCBI

RefSeq Acc Id:

XM_039096463 ⟹ XP_038952391

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,591 - 25,867,652 (+)	NCBI

RefSeq Acc Id:

XM_039096464 ⟹ XP_038952392

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,590 - 25,873,115 (+)	NCBI

RefSeq Acc Id:

XM_039096465 ⟹ XP_038952393

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,590 - 25,873,115 (+)	NCBI

RefSeq Acc Id:

XM_039096466 ⟹ XP_038952394

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,591 - 25,873,115 (+)	NCBI

RefSeq Acc Id:

XM_039096467 ⟹ XP_038952395

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,590 - 25,867,652 (+)	NCBI

RefSeq Acc Id:

XM_039096468 ⟹ XP_038952396

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,825 - 25,867,652 (+)	NCBI

RefSeq Acc Id:

XM_039096469 ⟹ XP_038952397

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,853,034 - 25,873,115 (+)	NCBI

RefSeq Acc Id:

XM_039096470 ⟹ XP_038952398

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,853,034 - 25,873,115 (+)	NCBI

RefSeq Acc Id:

XM_039096471 ⟹ XP_038952399

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,853,034 - 25,873,115 (+)	NCBI

RefSeq Acc Id:

XM_225253 ⟹ XP_225253

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,593 - 25,873,115 (+)	NCBI
Rnor_6.0	17	26,478,777 - 26,505,225 (+)	NCBI
Rnor_5.0	17	28,399,829 - 28,427,084 (+)	NCBI
RGSC_v3.4	17	31,910,886 - 31,938,409 (+)	RGD

Sequence:

show sequence

GCTGCTTAGATCCGGTTCGAACATTCTAAACTTGGTCTCCTTCCCACGCCTCGGCTAACGATCT
CCTTAAGTCAACTGGGACGCAGACTCTACCAGATGGACAGGACCCAACCTCAGAATACGGAGGA
GCATGCGCAAGAGGCCCAGCCAGCAAGACGGGGCCCAGCAGTGGAGAAGAGCAGAGACAAGGTT
GCAGGCCTTGAATGCGGCAAAGCAGAAACCATGGACCTCAAGTTCAACAACTCCAGGAAGTATG
TCTCCATCACTGTGCCCTCCAAAACCCAGACAATGTCGCCACACATCAAGTCGGTTGAGGACGT
CGTGGTGCTGGGCGTGAACCTCAGCAGGTTTAAGAAGCTCACACAGTTTCTCATATGTGTGGCT
GGAGTTTTTGTGTTTTACCTAATTTATGGATACTTACAGGAGTTGATATTTTCAATGGAAGGCT
TTAAGCCTTACGGCTGGTACCTTACTTTAGTACAGTTTGCATTTTACTCTGTATTTGGCCTAAT
AGAACTCCAGCTCACTCAGGACAAAAGGAGAAGAATACCAGGAAAAACCTACATGATAATAGCT
TTTCTAACTGTGGGTACTATGGGCTTATCAAACACTTCCTTGGGCTACCTGAATTACCCAACCC
AAGTCATCTTCAAGTGCTGCAAACTGATTCCTGTTATGCTAGGAGGAGTTTTTATTCAAGGAAA
GAGGTACAACCTTGCAGACGTGTCCGCTGCAGTGTGCATGAGCCTTGGCCTGATCTGGTTTACC
CTTGCTGACAGCACAATTGCACCAAACTTTAATCTGACAGGTGTGATGCTTATCTCCCTGGCAC
TGTGTGCAGATGCTGTCATTGGGAACGTTCAGGAGAAAGCTATGAAACTGCACAATGCTTCCAA
CTCCGAGATGGTTTTGTATTCGTACTCAATCGGTTTTGTGTACATTCTGTTGGGATTGTCATGC
ACCAGTGGACTGGGTCCTGCACTGGCATTTTGTTCAAAGAACCCTGTTCGGACTTATGGCTATG
CCTTCCTGTTTTCCCTCACTGGTTACTTTGGAATCTCCTTTGTTCTGGCCCTCATTAAAATCTT
TGGTGCTCTTCTGGCTGTAACAGTGACAACAGGACGAAAAGCAATGACCATCGTCCTGTCCTTT
CTGTTCTTTGCTAAGCCATTCACATTTCAGTATATATGGTCTGGCTTGCTAGTTGTCCTTGGCA
TATTTCTGAATGTTTACAGCAAAAATATGGATAAAATAAGATTGCCCTCGGTGTACAGTGTGAT
AAAGAAAGCCATGGACATGAAAAAGTCAAGAACGTTGGCACAGACTGTGTAGGAACTGTGTTCG
CCTATGTAAAATAAAAGTCTGAGGGAACAATCATTAATCAACTCACTTTCCAAAGGCTTGTGGT
AAAACCAAAGGATCTGAAGGCTGCTGTCGTCTGAGCAGGTCGTACTCTCGGTGGTTCCTCGGCA
TCTGCCTCTACAGAACACACACTTTTGATCAGCTCCAAAACGATCAAGAGCCCACACCTAGGAC
ATTTTGCAATAAAGTCAGTATGAAGGAAAGTGCTTCCTAGCTGTCCTGAACATTTCACTGGAAG
TGGACCGTGTTGCAAGACTGATTGGCAATCCGTCCGGCCTGCAGCACGGTGCCGTGTAGTAGCA
CTGTTTGTCTCCATTCCGTTTCGGTGGTGTTATTTAAATTCTTCTCTGTTATAAGAGTAACTGA
TGATTTGAAGTTTAGAGAAAATAGCATTCATTTATAAATAAAATTATCCTGTGATTTTTTTTAA
ATGGCGTTTTAATAAAATTTGTTATTGAGGAGAATGGAGACAGGAAGAAGGGCTAATGTACACT
TTAAAACATGGGTTTTTAAAGTTCAGAGAAAATAGCATTCATTTATAAATAAAGTTATCCTGTG
ATTTTTTTAAAAAAA

hide sequence

RefSeq Acc Id:

XR_005495896

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,591 - 25,873,115 (+)	NCBI

RefSeq Acc Id:

XR_005495897

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,591 - 25,873,115 (+)	NCBI

RefSeq Acc Id:

XR_005495898

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,591 - 25,873,115 (+)	NCBI

RefSeq Acc Id:

XR_005495899

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,591 - 25,872,433 (+)	NCBI

RefSeq Acc Id:

XR_005495900

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,591 - 25,873,115 (+)	NCBI

RefSeq Acc Id:

XR_005495901

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	25,846,591 - 25,873,115 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100816	(Get FASTA)	NCBI Sequence Viewer
	XP_003751712	(Get FASTA)	NCBI Sequence Viewer
	XP_006253912	(Get FASTA)	NCBI Sequence Viewer
	XP_006253914	(Get FASTA)	NCBI Sequence Viewer
	XP_006253915	(Get FASTA)	NCBI Sequence Viewer
	XP_006253916	(Get FASTA)	NCBI Sequence Viewer
	XP_006253917	(Get FASTA)	NCBI Sequence Viewer
	XP_006253918	(Get FASTA)	NCBI Sequence Viewer
	XP_038952390	(Get FASTA)	NCBI Sequence Viewer
	XP_038952391	(Get FASTA)	NCBI Sequence Viewer
	XP_038952392	(Get FASTA)	NCBI Sequence Viewer
	XP_038952393	(Get FASTA)	NCBI Sequence Viewer
	XP_038952394	(Get FASTA)	NCBI Sequence Viewer
	XP_038952395	(Get FASTA)	NCBI Sequence Viewer
	XP_038952396	(Get FASTA)	NCBI Sequence Viewer
	XP_038952397	(Get FASTA)	NCBI Sequence Viewer
	XP_038952398	(Get FASTA)	NCBI Sequence Viewer
	XP_038952399	(Get FASTA)	NCBI Sequence Viewer
	XP_225253	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98245	(Get FASTA)	NCBI Sequence Viewer
	EDL98246	(Get FASTA)	NCBI Sequence Viewer
	EDL98247	(Get FASTA)	NCBI Sequence Viewer
	EDL98248	(Get FASTA)	NCBI Sequence Viewer
	EDL98249	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	XP_225253 ⟸ XM_225253
- Peptide Label:	isoform X1
- UniProtKB:	D4AAG3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDRTQPQNTEEHAQEAQPARRGPAVEKSRDKVAGLECGKAETMDLKFNNSRKYVSITVPSKTQT MSPHIKSVEDVVVLGVNLSRFKKLTQFLICVAGVFVFYLIYGYLQELIFSMEGFKPYGWYLTLV QFAFYSVFGLIELQLTQDKRRRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIP VMLGGVFIQGKRYNLADVSAAVCMSLGLIWFTLADSTIAPNFNLTGVMLISLALCADAVIGNVQ EKAMKLHNASNSEMVLYSYSIGFVYILLGLSCTSGLGPALAFCSKNPVRTYGYAFLFSLTGYFG ISFVLALIKIFGALLAVTVTTGRKAMTIVLSFLFFAKPFTFQYIWSGLLVVLGIFLNVYSKNMD KIRLPSVYSVIKKAMDMKKSRTLAQTV hide sequence

RefSeq Acc Id:

XP_003751712 ⟸ XM_003751664

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDLKFNNSRKYVSITVPSKTQTMSPHIKSVEDVVVLGVNLSRFKKLTQFLICVAGVFVFYLIYG
YLQELIFSMEGFKPYGWYLTLVQFAFYSVFGLIELQLTQDKRRRIPGKTYMIIAFLTVGTMGLS
NTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKRYNLADVSAAVCMSLGLIWFTLADSTIAPNF
NLTGVMLISLALCADAVIGNVQEKAMKLHNASNSEMVLYSYSIGFVYILLGLSCTSGLGPALAF
CSKNPVRTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAMTIVLSFLFFAKPFTFQ
YIWSGLLVVLGIFLNVYSKNMDKIRLPSVYSVIKKAMDMKKSRTLAQTV

hide sequence

RefSeq Acc Id:

XP_006253914 ⟸ XM_006253852

- Peptide Label:

isoform X3

- Sequence:

show sequence

MDRTQPQNTEEHAQEAQPARRGPAVEKSRDKVAGLECGKAETMDLKFNNSRKYVSITVPSKTQT
MSPHIKSVEDVVVLGVNLSRFKKLTQFLICVAGVFVFYLIYGYLQELIFSMEGFKPYGWYLTLV
QFAFYSVFGLIELQLTQDKRRRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIP
VMLGGVFIQGKRYNLADVSAAVCMSLGLIWFTLADSTIAPNFNLTGVMLISLALCADAVIGNVQ
EKAMKLHNASNSEMVLYSYSIGFVYILLGLSCTSGLGPALAFCSKNPVRTYGYAFLFSLTGYFG
ISFVLALIKIFGALLAVTVTTGRKAMTIVLSFLFFAKPFTFQWSWGV

hide sequence

RefSeq Acc Id:

XP_006253915 ⟸ XM_006253853

- Peptide Label:

isoform X4

- Sequence:

show sequence

MDRTQPQNTEEHAQEAQPARRGPAVEKSRDKVAGLECGKAETMDLKFNNSRKYVSITVPSKTQT
MSPHIKSVEDVVVLGVNLSRFKKLTQFLICVAGVFVFYLIYGYLQELIFSMEGFKPYGWYLTLV
QFAFYSVFGLIELQLTQDKRRRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIP
VMLGGVFIQGKRYNLADVSAAVCMSLGLIWFTLADSTIAPNFNLTGVMLISLALCADAVIGNVQ
EKAMKLHNASNSEMVLYSYSIGFVYILLGLSCTSGLGPALAFCSKNPVRTYGYAFLFSLTGYFG
ISFVLALIKIFGALLAVTAVMRMSLSSL

hide sequence

RefSeq Acc Id:

XP_006253916 ⟸ XM_006253854

- Peptide Label:

isoform X5

- Sequence:

show sequence

MDRTQPQNTEEHAQEAQPARRGPAVEKSRDKVAGLECGKAETMDLKFNNSRKYVSITVPSKTQT
MSPHIKSVEDVVVLGVNLSRFKKLTQFLICVAGVFVFYLIYGYLQELIFSMEGFKPYGWYLTLV
QFAFYSVFGLIELQLTQDKRRRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIP
VMLGGVFIQGKRYNLADVSAAVCMSLGLIWFTLADSTIAPNFNLTGVMLISLALCADAVIGNVQ
EKAMKLHNASNSEMVLYSYSIGFVYILLGLSCTSGLGPALAFCSKNPVRTYGYAFLFSLTGYFG
ISFVLALIKIFGALLAVTVMRMSLSSL

hide sequence

RefSeq Acc Id:	XP_006253918 ⟸ XM_006253856
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6ACP7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLKFNNSRKYVSITVPSKTQTMSPHIKSVEDVVVLGVNLSRFKKLTQFLICVAGVFVFYLIYG YLQELIFSMEGFKPYGWYLTLVQFAFYSVFGLIELQLTQDKRRRIPGKTYMIIAFLTVGTMGLS NTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKRYNLADVSAAVCMSLGLIWFTLADSTIAPNF NLTGVMLISLALCADAVIGNVQEKAMKLHNASNSEMVLYSYSIGFVYILLGLSCTSGLGPALAF CSKNPVRTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAMTIVLSFLFFAKPFTFQ YIWSGLLVVLGIFLNVYSKNMDKIRLPSVYSVIKKAMDMKKSRTLAQTV hide sequence

RefSeq Acc Id:	XP_006253912 ⟸ XM_006253850
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6ACP7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLKFNNSRKYVSITVPSKTQTMSPHIKSVEDVVVLGVNLSRFKKLTQFLICVAGVFVFYLIYG YLQELIFSMEGFKPYGWYLTLVQFAFYSVFGLIELQLTQDKRRRIPGKTYMIIAFLTVGTMGLS NTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKRYNLADVSAAVCMSLGLIWFTLADSTIAPNF NLTGVMLISLALCADAVIGNVQEKAMKLHNASNSEMVLYSYSIGFVYILLGLSCTSGLGPALAF CSKNPVRTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAMTIVLSFLFFAKPFTFQ YIWSGLLVVLGIFLNVYSKNMDKIRLPSVYSVIKKAMDMKKSRTLAQTV hide sequence

RefSeq Acc Id:	XP_006253917 ⟸ XM_006253855
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6ACP7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLKFNNSRKYVSITVPSKTQTMSPHIKSVEDVVVLGVNLSRFKKLTQFLICVAGVFVFYLIYG YLQELIFSMEGFKPYGWYLTLVQFAFYSVFGLIELQLTQDKRRRIPGKTYMIIAFLTVGTMGLS NTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKRYNLADVSAAVCMSLGLIWFTLADSTIAPNF NLTGVMLISLALCADAVIGNVQEKAMKLHNASNSEMVLYSYSIGFVYILLGLSCTSGLGPALAF CSKNPVRTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAMTIVLSFLFFAKPFTFQ YIWSGLLVVLGIFLNVYSKNMDKIRLPSVYSVIKKAMDMKKSRTLAQTV hide sequence

RefSeq Acc Id:

ENSRNOP00000021670 ⟸ ENSRNOT00000021669

RefSeq Acc Id:	XP_038952393 ⟸ XM_039096465
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038952392 ⟸ XM_039096464
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038952395 ⟸ XM_039096467
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038952390 ⟸ XM_039096462
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038952394 ⟸ XM_039096466
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038952391 ⟸ XM_039096463
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038952396 ⟸ XM_039096468
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038952397 ⟸ XM_039096469
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038952398 ⟸ XM_039096470
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038952399 ⟸ XM_039096471
- Peptide Label:	isoform X11

RefSeq Acc Id:

ENSRNOP00000089959 ⟸ ENSRNOT00000112405

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AAG3-F1-model_v2	AlphaFold	D4AAG3	1-411	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307183	AgrOrtholog
BioCyc Gene	G2FUF-9697	BioCyc
Ensembl Genes	ENSRNOG00000016174	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000021670	ENTREZGENE
	ENSRNOP00000021670.4	UniProtKB/TrEMBL
	ENSRNOP00000089959	ENTREZGENE
	ENSRNOP00000089959.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021669	ENTREZGENE
	ENSRNOT00000021669.7	UniProtKB/TrEMBL
	ENSRNOT00000112405	ENTREZGENE
	ENSRNOT00000112405.1	UniProtKB/TrEMBL
InterPro	UAA	UniProtKB/TrEMBL
NCBI Gene	306866	ENTREZGENE
PANTHER	ADENOSINE 3'-PHOSPHO 5'-PHOSPHOSULFATE TRANSPORTER 2	UniProtKB/TrEMBL
	PTHR10778	UniProtKB/TrEMBL
Pfam	UAA	UniProtKB/TrEMBL
PhenoGen	Slc35b3	PhenoGen
UniProt	A0A8I6ACP7	ENTREZGENE, UniProtKB/TrEMBL
	D4AAG3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-24	Slc35b3	solute carrier family 35 member B3	Slc35b3	solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-02	Slc35b3	solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3	Slc35b3	solute carrier family 35, member B3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Slc35b3	solute carrier family 35, member B3	Slc35b3_predicted	solute carrier family 35, member B3 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Slc35b3_predicted	solute carrier family 35, member B3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar