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Gene: Slf1 (SMC5-SMC6 complex localization factor 1) Chinchilla lanigera

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Symbol:

Slf1

Name:

SMC5-SMC6 complex localization factor 1

RGD ID:

9018215

Description:

ENCODES a protein that exhibits protein-containing complex binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN DNA damage response (ortholog); positive regulation of double-strand break repair (ortholog); positive regulation of maintenance of mitotic sister chromatid cohesion (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nuclear inclusion body (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Ankrd32; ankyrin repeat domain 32; ankyrin repeat domain-containing protein 32

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	17,756,861 - 17,810,663 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955418	17,756,610 - 17,818,552 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slf1	Chinchilla	familial adenomatous polyposis 1		ISO	RGD:1312535	8554872	ClinVar Annotator: match by term: Familial adenomatous polyposis 1	ClinVar	PMID:17963004\|PMID:18487285\|PMID:19279422\|PMID:19409520\|PMID:20685668\|PMID:21643010\|PMID:28492532
Slf1	Chinchilla	Hereditary Neoplastic Syndromes		ISO	RGD:1312535	8554872	ClinVar Annotator: match by term: Hereditary cancer-predisposing syndrome	ClinVar	PMID:17963004\|PMID:18487285\|PMID:19279422\|PMID:19409520\|PMID:20685668\|PMID:21643010\|PMID:28492532
Slf1	Chinchilla	Neurodevelopmental Disorders		ISO	RGD:1312535	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slf1	Chinchilla	DNA damage response	involved_in	ISO	RGD:1312535	9068941	PMID:25931565	UniProt	PMID:25931565
Slf1	Chinchilla	DNA damage response	involved_in	ISO	RGD:1312536	9068941	PMID:22036607	UniProt	PMID:22036607
Slf1	Chinchilla	positive regulation of double-strand break repair	involved_in	ISO	RGD:1312535	9068941	PMID:25931565	UniProt	PMID:25931565
Slf1	Chinchilla	positive regulation of maintenance of mitotic sister chromatid cohesion	involved_in	ISO	RGD:1312535	9068941	PMID:25931565	UniProt	PMID:25931565
Slf1	Chinchilla	positive regulation of protein-containing complex assembly	involved_in	ISO	RGD:1312535	9068941	PMID:25931565	UniProt	PMID:25931565
Slf1	Chinchilla	protein localization to site of double-strand break	involved_in	ISO	RGD:1312535	9068941	PMID:25931565	UniProt	PMID:25931565

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slf1	Chinchilla	centrosome	located_in	ISO	RGD:1312536	9068941	PMID:15632077	MGI	PMID:15632077
Slf1	Chinchilla	cytoplasm	located_in	ISO	RGD:1312536	9068941	PMID:15632077	UniProt	PMID:15632077
Slf1	Chinchilla	nuclear inclusion body	located_in	ISO	RGD:1312536	9068941	PMID:22036607	UniProt	PMID:22036607
Slf1	Chinchilla	nucleoplasm	located_in	ISO	RGD:1312535	9068941		HPA	GO_REF:0000052
Slf1	Chinchilla	nucleosome	part_of	ISO	RGD:1312536	9068941	PMID:15632077	UniProt	PMID:15632077
Slf1	Chinchilla	nucleus	located_in	ISO	RGD:1312536	9068941	PMID:15632077, PMID:22036607	UniProt	PMID:15632077\|PMID:22036607
Slf1	Chinchilla	site of double-strand break	located_in	ISO	RGD:1312535	9068941	PMID:25931565	UniProt	PMID:25931565

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slf1	Chinchilla	protein binding	enables	ISO	UniProtKB:Q8IX21	9068941	PMID:25931565, PMID:26496610, PMID:32389690, PMID:33961781, PMID:36373674	IntAct	PMID:25931565\|PMID:26496610\|PMID:32389690\|PMID:33961781\|PMID:36373674
Slf1	Chinchilla	protein binding	enables	ISO	UniProtKB:Q9NS91	9068941	PMID:15632077	MGI	PMID:15632077
Slf1	Chinchilla	protein-containing complex binding	enables	ISO	UniProtKB:Q96SB8	9068941	PMID:25931565	UniProt	PMID:25931565
Slf1	Chinchilla	ubiquitin protein ligase binding	enables	ISO	UniProtKB:Q9NS91	9068941	PMID:25931565	UniProt	PMID:25931565
Slf1	Chinchilla	ubiquitin protein ligase binding	enables	ISO	UniProtKB:Q9NS91	9068941	PMID:22036607	UniProt	PMID:22036607

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

PMID:22301074	PMID:30032202

Slf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	17,756,861 - 17,810,663 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955418	17,756,610 - 17,818,552 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	94,618,231 - 94,697,621 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	94,618,669 - 94,739,436 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	93,954,374 - 94,033,326 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	94,040,330 - 94,057,338 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	94,040,329 - 94,057,110	NCBI
Celera	5	89,816,284 - 89,893,469 (+)	NCBI		Celera
Cytogenetic Map	5	q15	NCBI
HuRef	5	89,127,664 - 89,204,854 (+)	NCBI		HuRef
CHM1_1	5	93,387,020 - 93,464,202 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	95,098,399 - 95,182,005 (+)	NCBI		T2T-CHM13v2.0

Slf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	77,191,207 - 77,283,632 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	77,191,207 - 77,283,592 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	77,043,088 - 77,135,513 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	77,043,088 - 77,135,473 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	77,182,349 - 77,274,729 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	77,506,638 - 77,554,806 (-)	NCBI		MGSCv36	mm8
Celera	13	79,368,270 - 79,463,257 (-)	NCBI		Celera
Cytogenetic Map	13	C1	NCBI
cM Map	13	40.98	NCBI

Slf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	8,498,776 - 8,606,251 (-)	NCBI		GRCr8
mRatBN7.2	2	6,767,015 - 6,874,428 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	6,767,015 - 6,867,149 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	13,879,067 - 13,986,283 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	11,978,347 - 12,085,564 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	6,613,410 - 6,719,621 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	4,095,126 - 4,195,819 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	4,095,129 - 4,195,810 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	4,092,109 - 4,193,740 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	4,361,776 - 4,469,805 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	4,436,397 - 4,492,122 (-)	NCBI
Celera	2	3,225,433 - 3,326,221 (-)	NCBI		Celera
Cytogenetic Map	2	q11	NCBI

SLF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	20,684,529 - 20,782,033 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	18,838,281 - 18,935,816 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	20,660,101 - 20,757,072 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	20,817,614 - 20,894,427 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	20,817,614 - 20,884,453 (-)	Ensembl	panpan1.1		panPan2

SLF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	14,792,851 - 14,877,024 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	14,793,363 - 14,869,755 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	16,131,131 - 16,215,470 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	14,672,489 - 14,756,866 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	14,670,381 - 14,744,679 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	14,635,334 - 14,719,686 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	14,633,850 - 14,718,174 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	14,837,537 - 14,921,894 (-)	NCBI		UU_Cfam_GSD_1.0

Slf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	170,378,075 - 170,449,166 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936523	8,563,410 - 8,634,585 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936523	8,563,662 - 8,634,576 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	101,313,091 - 101,375,607 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	101,286,744 - 101,375,612 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	104,867,972 - 104,919,338 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	88,497,787 - 88,573,966 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	88,499,373 - 88,576,983 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666049	37,141,458 - 37,236,741 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624743	13,337,785 - 13,395,618 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624743	13,327,544 - 13,394,434 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005382259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005382260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005382261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013512986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01019157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01019158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDK01187313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000007455 ⟹ ENSCLAP00000007338

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955418	17,756,861 - 17,810,663 (-)	Ensembl

RefSeq Acc Id:

XM_005382259 ⟹ XP_005382316

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955418	17,756,610 - 17,818,552 (-)	NCBI

Sequence:

show sequence

ATTATTTCCCAGAGCCCGGATTAGTGAATCGGCGAGAGTTGCTGCGGCAGTCGTCGCGCCTTTCGCCGCCGCTGCCGCCACCGGAGGGAAGCAGCAGAGGCCCTTCGGCCAGGAAGATGGAAGATAAT
GCCCCAAAGCATGTCATCCAGATGACAGGGTTTAAGATGGAGGAAAAGGAAGCTCTGGGAAAATTGCTTTTAAAGCTAGATTGCACTTTTATTAAGAGTGAGAAATACAAAAACTGTACACATCTTAT
AGCCGAACGCTTATGTAAAAGTGAAAAGTTTTTAGCAGCTTGTGCTGCAGGAAAATGGGTACTAACTAAGGACTACATAATTCATAGTGCCAACAGTGGCAGATGGCTTGATGAAACAACTTATGAAT
GGGGATATAAAATTGAAAAAGACTCCCATTATTCACCTCAAATGCAATCTGCACCTAAAAGATGGCGTGAGGAGCTGAAACGCTCTGGTGCTCCAGGAGCGTTCCACAGATGGAAAGTTGTCCTCCTT
GTTAGAGCTGATAAACGAAGTGATTCTCTTGTAAGAGTGTTAAAGGCTGGAAAGGCAAATGTTATTTTACCAAAAAGTTCACCAACTGGAGTAACTCATGTAATTGCCAGTAATGCAAGAATCAGTGC
TGAAAAAGAAAAAGATACCTTTAATGCTCCATTTTACCCGATTCAGTATCTAGGGGATTTTCTTTTAGAGAGAGAAATTCAGAATGACGAAGATTCTCAAATTAGTTCTATTGGAAGTAAACCAAGCA
ATCAAGAAAAAAACAATGATTTCAGAAAAGATACGGGAGTTTTTGAAATGAAAAGTGCCTTAAGAGAGACCATATGTAGAACCCAGAAAGAAATGCAAAATCATGATGAAGATGTTTGTTCTGCTGTG
AGTGAACATCACAAAAGAGAGAAATTCAGAGAAACTAGAGAAGACTTGAGATTTATTAAAATGAGAAATACCTTAAGAAGTCATATATACGGAAATCAGAAGGATACTAAGAAAAAATACGAAGATAT
TCAAAGAAGTTATACTTTAAGGAAAAAACGCAAAAAAGAAACTGATTGCAAGAAAGACATCGAACATGACAAAATTAAAAGTACCTTAAGAAAACAAGTGTGTTACACAGATCAGAAAGAAATGAACA
GTTCTGTTTTCACTGATTATGCCAAAGAATCAAAACCCAAGGATATCAGGATGGATATGGATGTCGTTGAAATAAAAAATATCTTAAGGAAGCACATATATAGAGCTCAGGCTGTCAGATACAACTGC
ATTAGAATAGAGAAACAACCAGTATACAACGTAGAGGTTAAAAATGCTGACTTTCCCAGAGGAATATTAAATTTAATTGAAAGCCTCATAGAAGGACAGTTTTTTAAAGAAGCAATGGAAGAGCTTTC
CTCGTTGCAAGCGCATTATGTCCCTCCCGTGTGCCTTCTTCATTCTCTTCTGGACAGCGTCCTACAGGATAAAATAGATACATTTTCTGGGCGATACTTTGATATATTGTCAGCTCTTCTTCGTCTGC
ATCCTCCTTGGAAATCTCCAACCATGTCAAGATACTACTTAGAGTTGTTTCAGTGTCCAACTTGTATGAAAGGACCCTGGTCTCTGGTTGAAGCACTTATCAGGTCGTGTCTTTTTAATGAAAATTTT
TGTCATGAAATTTCACAAAACATTGACTCTAAGGTATTCCACCTTACATTGCTCAAATTTTTCTTCAGTTTGGTTGAAAGTGAAGTCCAACATTTGAGTCAAAAGTTGTATGACTGTTCAGAGTCTCA
GAGTCTGAAAACAACAGGAAAGGCAATTCTCCTTGAAATCTTTTGGTCAGGAAATGAAACTTCTGGGCTTTTGACCAAACCAGTAAATATGCTTTTAGAATGGACTATGTATTCTTACAAGGAAAAAT
GCAAATCCAATGACGTCTTCAGACATGAACTAGCTTACTTATTGACTGGAATTCTTGGAGCAGCAATAGATTATTGGATCTTCCTTGGTCTTAAGATGGGTAGAAATGTGATGCGACACCTGTCTGAG
GACTTAGGAAGTTATATTTCCCTTACATGTGATGACTTTTCTTCACAGGAACTAGAGATTTTCATTTGCTCCTTTTCCTCCTCCTGGCTTCAAATGTTTGTTGCAGAAGCAGTCTTTAAAAAGTACTT
TTTTGATAATTCTTCTGAGCTGCTGTCGCTTCAGAAAATGGTAAATGGCTATTTGCGGGCTTTGGGGAAAGCTAGTGTGCACAGGGCTGGGAAGGCGCATTTACCAAAGAAAACCGGACAGCGATCTT
GCCTTGAATCTCAGAGAGCCTTACTGATGCTGAACGGCGCAAAGCGGAAGCAAGGGGAAGGGCTGCCCAGGTTACCAGAGCTGAGCCTTGCTAAATGTTCCCCATCATTAAAAAAATTGAAAAAGAAG
TCAGAAGGAGAATCACCATGGTCCAAGGAGAATTGCCCCAGTCTTAAAAAGATGAATATTCACAAGACTAATCTAAAAGGAGAAACAGCCCTGCATAGGGCTTGCATAAGCAACAAAGTGGACAAATT
GATTTTACTTCTGTCTTTGCCAGGAATAGACATCAATGTTAAAGACAATGCTGGCTGGACGCCTTTGCATGAAGCCTGTAACTATGGCAACACAGTGTGTGTCCAGGAAATTTTGCAGCGTTGTCCAG
AGGTAGATCTGCTCACTCAAGTGGACGGGGTGACTCCTTTGCATGACGCACTGTCCAACGGACATGTAGAAATTGGCAAGCTGCTGCTGCAGCACGGGGGCCCAGTGCTTTTACAGCAGAGAAATTCT
AAGGGGGAATTGCCCTTGGATTATGTGTTGTCCCCACAAATCAAGGAGGAGCTTTTTGCTATTGCAAAAATAGAAGATACAGTGGAGAACTTTCATGCACAAGCAGAGAAACATTTTTACCACCAGCA
ACTCGAATTTGGTTCATTTTTACTCAGTAGGATGCTGCTAAATTTTTGTTCAATTTTTGATTTGTCTTCAGAGTTCATCTTAGCTTTCCAAGGGTTAGCTCATCTGAATGAGCAGCTTATGGCTTATA
AAAGTTTTAAAGAAACCACCACGGCTCACACTGACTGGCTACTGGATCTTTATGATAGAAATATAAAGACATTGCAGGAGCTCCCCAATGTTCTGAAGGAACTGCCTGAGAATTTGAAATTATGTCCC
GGAGTACATACCGAGGCCTTACTGGTGACTTTGGAAATGATGTGTCGGTCACAGAATTTTCATGATGGTGCCACAAAGTACAGGTCAAGTTTCTAAACGTGGTCTGGTTTGCTTTGTAATTTAGTAGA
GACTTCAGAGCTTACTGACAAATATGAATACGATTTATTTATTAACTGATTATTCAGATTTGTGAAATTTCAAAAACCCTTGAAAAATTTCTGCAGAACTAAAATATAAGCTTCTATTTCCAGGATGT
AGAATTTGATTAAGAAGTTTTTGAAAAAAAAGTTTTATTTGATTTTATTAATCTTTTATTAATAAATTGCTTTTATTAAGCCTTTTGTTCT

hide sequence

RefSeq Acc Id:

XM_005382260 ⟹ XP_005382317

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955418	17,756,610 - 17,818,552 (-)	NCBI

Sequence:

show sequence

ATTATTTCCCAGAGCCCGGATTAGTGAATCGGCGAGAGTTGCTGCGGCAGTCGTCGCGCCTTTCGCCGCCGCTGCCGCCACCGGAGGGAAGCAGCAGAGGCCCTTCGGCCAGGAAGTTTCAGTTTCAT
ATTTAAACATTACTAAAGAAAGAAACTGCTTTAAAAAGGCTTTCCCGATTTCTGCTTTTTATCCAAGATGGAAGATAATGCCCCAAAGCATGTCATCCAGATGACAGGGTTTAAGATGGAGGAAAAGG
AAGCTCTGGGAAAATTGCTTTTAAAGCTAGATTGCACTTTTATTAAGAGTGAGAAATACAAAAACTGTACACATCTTATAGCCGAACGCTTATGTAAAAGTGAAAAGTTTTTAGCAGCTTGTGCTGCA
GGAAAATGGGTACTAACTAAGGACTACATAATTCATAGTGCCAACAGTGGCAGATGGCTTGATGAAACAACTTATGAATGGGGATATAAAATTGAAAAAGACTCCCATTATTCACCTCAAATGCAATC
TGCACCTAAAAGATGGCGTGAGGAGCTGAAACGCTCTGGTGCTCCAGGAGCGTTCCACAGATGGAAAGTTGTCCTCCTTGTTAGAGCTGATAAACGAAGTGATTCTCTTGTAAGAGTGTTAAAGGCTG
GAAAGGCAAATGTTATTTTACCAAAAAGTTCACCAACTGGAGTAACTCATGTAATTGCCAGTAATGCAAGAATCAGTGCTGAAAAAGAAAAAGATACCTTTAATGCTCCATTTTACCCGATTCAGTAT
CTAGGGGATTTTCTTTTAGAGAGAGAAATTCAGAATGACGAAGATTCTCAAATTAGTTCTATTGGAAGTAAACCAAGCAATCAAGAAAAAAACAATGATTTCAGAAAAGATACGGGAGTTTTTGAAAT
GAAAAGTGCCTTAAGAGAGACCATATGTAGAACCCAGAAAGAAATGCAAAATCATGATGAAGATGTTTGTTCTGCTGTGAGTGAACATCACAAAAGAGAGAAATTCAGAGAAACTAGAGAAGACTTGA
GATTTATTAAAATGAGAAATACCTTAAGAAGTCATATATACGGAAATCAGAAGGATACTAAGAAAAAATACGAAGATATTCAAAGAAGTTATACTTTAAGGAAAAAACGCAAAAAAGAAACTGATTGC
AAGAAAGACATCGAACATGACAAAATTAAAAGTACCTTAAGAAAACAAGTGTGTTACACAGATCAGAAAGAAATGAACAGTTCTGTTTTCACTGATTATGCCAAAGAATCAAAACCCAAGGATATCAG
GATGGATATGGATGTCGTTGAAATAAAAAATATCTTAAGGAAGCACATATATAGAGCTCAGGCTGTCAGATACAACTGCATTAGAATAGAGAAACAACCAGTATACAACGTAGAGGTTAAAAATGCTG
ACTTTCCCAGAGGAATATTAAATTTAATTGAAAGCCTCATAGAAGGACAGTTTTTTAAAGAAGCAATGGAAGAGCTTTCCTCGTTGCAAGCGCATTATGTCCCTCCCGTGTGCCTTCTTCATTCTCTT
CTGGACAGCGTCCTACAGGATAAAATAGATACATTTTCTGGGCGATACTTTGATATATTGTCAGCTCTTCTTCGTCTGCATCCTCCTTGGAAATCTCCAACCATGTCAAGATACTACTTAGAGTTGTT
TCAGTGTCCAACTTGTATGAAAGGACCCTGGTCTCTGGTTGAAGCACTTATCAGGTCGTGTCTTTTTAATGAAAATTTTTGTCATGAAATTTCACAAAACATTGACTCTAAGGTATTCCACCTTACAT
TGCTCAAATTTTTCTTCAGTTTGGTTGAAAGTGAAGTCCAACATTTGAGTCAAAAGTTGTATGACTGTTCAGAGTCTCAGAGTCTGAAAACAACAGGAAAGGCAATTCTCCTTGAAATCTTTTGGTCA
GGAAATGAAACTTCTGGGCTTTTGACCAAACCAGTAAATATGCTTTTAGAATGGACTATGTATTCTTACAAGGAAAAATGCAAATCCAATGACGTCTTCAGACATGAACTAGCTTACTTATTGACTGG
AATTCTTGGAGCAGCAATAGATTATTGGATCTTCCTTGGTCTTAAGATGGGTAGAAATGTGATGCGACACCTGTCTGAGGACTTAGGAAGTTATATTTCCCTTACATGTGATGACTTTTCTTCACAGG
AACTAGAGATTTTCATTTGCTCCTTTTCCTCCTCCTGGCTTCAAATGTTTGTTGCAGAAGCAGTCTTTAAAAAGTACTTTTTTGATAATTCTTCTGAGCTGCTGTCGCTTCAGAAAATGGTAAATGGC
TATTTGCGGGCTTTGGGGAAAGCTAGTGTGCACAGGGCTGGGAAGGCGCATTTACCAAAGAAAACCGGACAGCGATCTTGCCTTGAATCTCAGAGAGCCTTACTGATGCTGAACGGCGCAAAGCGGAA
GCAAGGGGAAGGGCTGCCCAGGTTACCAGAGCTGAGCCTTGCTAAATGTTCCCCATCATTAAAAAAATTGAAAAAGAAGTCAGAAGGAGAATCACCATGGTCCAAGGAGAATTGCCCCAGTCTTAAAA
AGATGAATATTCACAAGACTAATCTAAAAGGAGAAACAGCCCTGCATAGGGCTTGCATAAGCAACAAAGTGGACAAATTGATTTTACTTCTGTCTTTGCCAGGAATAGACATCAATGTTAAAGACAAT
GCTGGCTGGACGCCTTTGCATGAAGCCTGTAACTATGGCAACACAGTGTGTGTCCAGGAAATTTTGCAGCGTTGTCCAGAGGTAGATCTGCTCACTCAAGTGGACGGGGTGACTCCTTTGCATGACGC
ACTGTCCAACGGACATGTAGAAATTGGCAAGCTGCTGCTGCAGCACGGGGGCCCAGTGCTTTTACAGCAGAGAAATTCTAAGGGGGAATTGCCCTTGGATTATGTGTTGTCCCCACAAATCAAGGAGG
AGCTTTTTGCTATTGCAAAAATAGAAGATACAGTGGAGAACTTTCATGCACAAGCAGAGAAACATTTTTACCACCAGCAACTCGAATTTGGTTCATTTTTACTCAGTAGGATGCTGCTAAATTTTTGT
TCAATTTTTGATTTGTCTTCAGAGTTCATCTTAGCTTTCCAAGGGTTAGCTCATCTGAATGAGCAGCTTATGGCTTATAAAAGTTTTAAAGAAACCACCACGGCTCACACTGACTGGCTACTGGATCT
TTATGATAGAAATATAAAGACATTGCAGGAGCTCCCCAATGTTCTGAAGGAACTGCCTGAGAATTTGAAATTATGTCCCGGAGTACATACCGAGGCCTTACTGGTGACTTTGGAAATGATGTGTCGGT
CACAGAATTTTCATGATGGTGCCACAAAGTACAGGTCAAGTTTCTAAACGTGGTCTGGTTTGCTTTGTAATTTAGTAGAGACTTCAGAGCTTACTGACAAATATGAATACGATTTATTTATTAACTGA
TTATTCAGATTTGTGAAATTTCAAAAACCCTTGAAAAATTTCTGCAGAACTAAAATATAAGCTTCTATTTCCAGGATGTAGAATTTGATTAAGAAGTTTTTGAAAAAAAAGTTTTATTTGATTTTATT
AATCTTTTATTAATAAATTGCTTTTATTAAGCCTTTTGTTCT

hide sequence

RefSeq Acc Id:

XM_005382261 ⟹ XP_005382318

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955418	17,756,610 - 17,811,663 (-)	NCBI

Sequence:

show sequence

CACAGAGACAGCTGCATGCTCTGCATGAAGGCCAGCTCTGGTCACAGTCACTATTTCTTTAGTT
ATGTGTGTTATGTAGTCGAAGATGGAAGATAATGCCCCAAAGCATGTCATCCAGATGACAGGGTTTAAGATGGAGGAAAAGGAAGCTCTGGGAAAATTGCTTTTAAAGCTAGATTGCACTTTTATTAA
GAGTGAGAAATACAAAAACTGTACACATCTTATAGCCGAACGCTTATGTAAAAGTGAAAAGTTTTTAGCAGCTTGTGCTGCAGGAAAATGGGTACTAACTAAGGACTACATAATTCATAGTGCCAACA
GTGGCAGATGGCTTGATGAAACAACTTATGAATGGGGATATAAAATTGAAAAAGACTCCCATTATTCACCTCAAATGCAATCTGCACCTAAAAGATGGCGTGAGGAGCTGAAACGCTCTGGTGCTCCA
GGAGCGTTCCACAGATGGAAAGTTGTCCTCCTTGTTAGAGCTGATAAACGAAGTGATTCTCTTGTAAGAGTGTTAAAGGCTGGAAAGGCAAATGTTATTTTACCAAAAAGTTCACCAACTGGAGTAAC
TCATGTAATTGCCAGTAATGCAAGAATCAGTGCTGAAAAAGAAAAAGATACCTTTAATGCTCCATTTTACCCGATTCAGTATCTAGGGGATTTTCTTTTAGAGAGAGAAATTCAGAATGACGAAGATT
CTCAAATTAGTTCTATTGGAAGTAAACCAAGCAATCAAGAAAAAAACAATGATTTCAGAAAAGATACGGGAGTTTTTGAAATGAAAAGTGCCTTAAGAGAGACCATATGTAGAACCCAGAAAGAAATG
CAAAATCATGATGAAGATGTTTGTTCTGCTGTGAGTGAACATCACAAAAGAGAGAAATTCAGAGAAACTAGAGAAGACTTGAGATTTATTAAAATGAGAAATACCTTAAGAAGTCATATATACGGAAA
TCAGAAGGATACTAAGAAAAAATACGAAGATATTCAAAGAAGTTATACTTTAAGGAAAAAACGCAAAAAAGAAACTGATTGCAAGAAAGACATCGAACATGACAAAATTAAAAGTACCTTAAGAAAAC
AAGTGTGTTACACAGATCAGAAAGAAATGAACAGTTCTGTTTTCACTGATTATGCCAAAGAATCAAAACCCAAGGATATCAGGATGGATATGGATGTCGTTGAAATAAAAAATATCTTAAGGAAGCAC
ATATATAGAGCTCAGGCTGTCAGATACAACTGCATTAGAATAGAGAAACAACCAGTATACAACGTAGAGGTTAAAAATGCTGACTTTCCCAGAGGAATATTAAATTTAATTGAAAGCCTCATAGAAGG
ACAGTTTTTTAAAGAAGCAATGGAAGAGCTTTCCTCGTTGCAAGCGCATTATGTCCCTCCCGTGTGCCTTCTTCATTCTCTTCTGGACAGCGTCCTACAGGATAAAATAGATACATTTTCTGGGCGAT
ACTTTGATATATTGTCAGCTCTTCTTCGTCTGCATCCTCCTTGGAAATCTCCAACCATGTCAAGATACTACTTAGAGTTGTTTCAGTGTCCAACTTGTATGAAAGGACCCTGGTCTCTGGTTGAAGCA
CTTATCAGGTCGTGTCTTTTTAATGAAAATTTTTGTCATGAAATTTCACAAAACATTGACTCTAAGGTATTCCACCTTACATTGCTCAAATTTTTCTTCAGTTTGGTTGAAAGTGAAGTCCAACATTT
GAGTCAAAAGTTGTATGACTGTTCAGAGTCTCAGAGTCTGAAAACAACAGGAAAGGCAATTCTCCTTGAAATCTTTTGGTCAGGAAATGAAACTTCTGGGCTTTTGACCAAACCAGTAAATATGCTTT
TAGAATGGACTATGTATTCTTACAAGGAAAAATGCAAATCCAATGACGTCTTCAGACATGAACTAGCTTACTTATTGACTGGAATTCTTGGAGCAGCAATAGATTATTGGATCTTCCTTGGTCTTAAG
ATGGGTAGAAATGTGATGCGACACCTGTCTGAGGACTTAGGAAGTTATATTTCCCTTACATGTGATGACTTTTCTTCACAGGAACTAGAGATTTTCATTTGCTCCTTTTCCTCCTCCTGGCTTCAAAT
GTTTGTTGCAGAAGCAGTCTTTAAAAAGTACTTTTTTGATAATTCTTCTGAGCTGCTGTCGCTTCAGAAAATGGTAAATGGCTATTTGCGGGCTTTGGGGAAAGCTAGTGTGCACAGGGCTGGGAAGG
CGCATTTACCAAAGAAAACCGGACAGCGATCTTGCCTTGAATCTCAGAGAGCCTTACTGATGCTGAACGGCGCAAAGCGGAAGCAAGGGGAAGGGCTGCCCAGGTTACCAGAGCTGAGCCTTGCTAAA
TGTTCCCCATCATTAAAAAAATTGAAAAAGAAGTCAGAAGGAGAATCACCATGGTCCAAGGAGAATTGCCCCAGTCTTAAAAAGATGAATATTCACAAGACTAATCTAAAAGGAGAAACAGCCCTGCA
TAGGGCTTGCATAAGCAACAAAGTGGACAAATTGATTTTACTTCTGTCTTTGCCAGGAATAGACATCAATGTTAAAGACAATGCTGGCTGGACGCCTTTGCATGAAGCCTGTAACTATGGCAACACAG
TGTGTGTCCAGGAAATTTTGCAGCGTTGTCCAGAGGTAGATCTGCTCACTCAAGTGGACGGGGTGACTCCTTTGCATGACGCACTGTCCAACGGACATGTAGAAATTGGCAAGCTGCTGCTGCAGCAC
GGGGGCCCAGTGCTTTTACAGCAGAGAAATTCTAAGGGGGAATTGCCCTTGGATTATGTGTTGTCCCCACAAATCAAGGAGGAGCTTTTTGCTATTGCAAAAATAGAAGATACAGTGGAGAACTTTCA
TGCACAAGCAGAGAAACATTTTTACCACCAGCAACTCGAATTTGGTTCATTTTTACTCAGTAGGATGCTGCTAAATTTTTGTTCAATTTTTGATTTGTCTTCAGAGTTCATCTTAGCTTTCCAAGGGT
TAGCTCATCTGAATGAGCAGCTTATGGCTTATAAAAGTTTTAAAGAAACCACCACGGCTCACACTGACTGGCTACTGGATCTTTATGATAGAAATATAAAGACATTGCAGGAGCTCCCCAATGTTCTG
AAGGAACTGCCTGAGAATTTGAAATTATGTCCCGGAGTACATACCGAGGCCTTACTGGTGACTTTGGAAATGATGTGTCGGTCACAGAATTTTCATGATGGTGCCACAAAGTACAGGTCAAGTTTCTA
AACGTGGTCTGGTTTGCTTTGTAATTTAGTAGAGACTTCAGAGCTTACTGACAAATATGAATACGATTTATTTATTAACTGATTATTCAGATTTGTGAAATTTCAAAAACCCTTGAAAAATTTCTGCA
GAACTAAAATATAAGCTTCTATTTCCAGGATGTAGAATTTGATTAAGAAGTTTTTGAAAAAAAAGTTTTATTTGATTTTATTAATCTTTTATTAATAAATTGCTTTTATTAAGCCTTTTGTTCT

hide sequence

RefSeq Acc Id:

XM_013512986 ⟹ XP_013368440

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955418	17,756,610 - 17,813,517 (-)	NCBI

Sequence:

show sequence

TACAAAGAAGAATAAACTCGAGGCTTTTACAGATGGAAGATAATGCCCCAAAGCATGTCATCCAGATGACAGGGTTTAAGATGGAGGAAAAGGAAGCTCTGGGAAAATTGCTTTTAAAGCTAGATTGC
ACTTTTATTAAGAGTGAGAAATACAAAAACTGTACACATCTTATAGCCGAACGCTTATGTAAAAGTGAAAAGTTTTTAGCAGCTTGTGCTGCAGGAAAATGGGTACTAACTAAGGACTACATAATTCA
TAGTGCCAACAGTGGCAGATGGCTTGATGAAACAACTTATGAATGGGGATATAAAATTGAAAAAGACTCCCATTATTCACCTCAAATGCAATCTGCACCTAAAAGATGGCGTGAGGAGCTGAAACGCT
CTGGTGCTCCAGGAGCGTTCCACAGATGGAAAGTTGTCCTCCTTGTTAGAGCTGATAAACGAAGTGATTCTCTTGTAAGAGTGTTAAAGGCTGGAAAGGCAAATGTTATTTTACCAAAAAGTTCACCA
ACTGGAGTAACTCATGTAATTGCCAGTAATGCAAGAATCAGTGCTGAAAAAGAAAAAGATACCTTTAATGCTCCATTTTACCCGATTCAGTATCTAGGGGATTTTCTTTTAGAGAGAGAAATTCAGAA
TGACGAAGATTCTCAAATTAGTTCTATTGGAAGTAAACCAAGCAATCAAGAAAAAAACAATGATTTCAGAAAAGATACGGGAGTTTTTGAAATGAAAAGTGCCTTAAGAGAGACCATATGTAGAACCC
AGAAAGAAATGCAAAATCATGATGAAGATGTTTGTTCTGCTGTGAGTGAACATCACAAAAGAGAGAAATTCAGAGAAACTAGAGAAGACTTGAGATTTATTAAAATGAGAAATACCTTAAGAAGTCAT
ATATACGGAAATCAGAAGGATACTAAGAAAAAATACGAAGATATTCAAAGAAGTTATACTTTAAGGAAAAAACGCAAAAAAGAAACTGATTGCAAGAAAGACATCGAACATGACAAAATTAAAAGTAC
CTTAAGAAAACAAGTGTGTTACACAGATCAGAAAGAAATGAACAGTTCTGTTTTCACTGATTATGCCAAAGAATCAAAACCCAAGGATATCAGGATGGATATGGATGTCGTTGAAATAAAAAATATCT
TAAGGAAGCACATATATAGAGCTCAGGCTGTCAGATACAACTGCATTAGAATAGAGAAACAACCAGTATACAACGTAGAGGTTAAAAATGCTGACTTTCCCAGAGGAATATTAAATTTAATTGAAAGC
CTCATAGAAGGACAGTTTTTTAAAGAAGCAATGGAAGAGCTTTCCTCGTTGCAAGCGCATTATGTCCCTCCCGTGTGCCTTCTTCATTCTCTTCTGGACAGCGTCCTACAGGATAAAATAGATACATT
TTCTGGGCGATACTTTGATATATTGTCAGCTCTTCTTCGTCTGCATCCTCCTTGGAAATCTCCAACCATGTCAAGATACTACTTAGAGTTGTTTCAGTGTCCAACTTGTATGAAAGGACCCTGGTCTC
TGGTTGAAGCACTTATCAGGTCGTGTCTTTTTAATGAAAATTTTTGTCATGAAATTTCACAAAACATTGACTCTAAGGTATTCCACCTTACATTGCTCAAATTTTTCTTCAGTTTGGTTGAAAGTGAA
GTCCAACATTTGAGTCAAAAGTTGTATGACTGTTCAGAGTCTCAGAGTCTGAAAACAACAGGAAAGGCAATTCTCCTTGAAATCTTTTGGTCAGGAAATGAAACTTCTGGGCTTTTGACCAAACCAGT
AAATATGCTTTTAGAATGGACTATGTATTCTTACAAGGAAAAATGCAAATCCAATGACGTCTTCAGACATGAACTAGCTTACTTATTGACTGGAATTCTTGGAGCAGCAATAGATTATTGGATCTTCC
TTGGTCTTAAGATGGGTAGAAATGTGATGCGACACCTGTCTGAGGACTTAGGAAGTTATATTTCCCTTACATGTGATGACTTTTCTTCACAGGAACTAGAGATTTTCATTTGCTCCTTTTCCTCCTCC
TGGCTTCAAATGTTTGTTGCAGAAGCAGTCTTTAAAAAGTACTTTTTTGATAATTCTTCTGAGCTGCTGTCGCTTCAGAAAATGGTAAATGGCTATTTGCGGGCTTTGGGGAAAGCTAGTGTGCACAG
GGCTGGGAAGGCGCATTTACCAAAGAAAACCGGACAGCGATCTTGCCTTGAATCTCAGAGAGCCTTACTGATGCTGAACGGCGCAAAGCGGAAGCAAGGGGAAGGGCTGCCCAGGTTACCAGAGCTGA
GCCTTGCTAAATGTTCCCCATCATTAAAAAAATTGAAAAAGAAGTCAGAAGGAGAATCACCATGGTCCAAGGAGAATTGCCCCAGTCTTAAAAAGATGAATATTCACAAGACTAATCTAAAAGGAGAA
ACAGCCCTGCATAGGGCTTGCATAAGCAACAAAGTGGACAAATTGATTTTACTTCTGTCTTTGCCAGGAATAGACATCAATGTTAAAGACAATGCTGGCTGGACGCCTTTGCATGAAGCCTGTAACTA
TGGCAACACAGTGTGTGTCCAGGAAATTTTGCAGCGTTGTCCAGAGGTAGATCTGCTCACTCAAGTGGACGGGGTGACTCCTTTGCATGACGCACTGTCCAACGGACATGTAGAAATTGGCAAGCTGC
TGCTGCAGCACGGGGGCCCAGTGCTTTTACAGCAGAGAAATTCTAAGGGGGAATTGCCCTTGGATTATGTGTTGTCCCCACAAATCAAGGAGGAGCTTTTTGCTATTGCAAAAATAGAAGATACAGTG
GAGAACTTTCATGCACAAGCAGAGAAACATTTTTACCACCAGCAACTCGAATTTGGTTCATTTTTACTCAGTAGGATGCTGCTAAATTTTTGTTCAATTTTTGATTTGTCTTCAGAGTTCATCTTAGC
TTTCCAAGGGTTAGCTCATCTGAATGAGCAGCTTATGGCTTATAAAAGTTTTAAAGAAACCACCACGGCTCACACTGACTGGCTACTGGATCTTTATGATAGAAATATAAAGACATTGCAGGAGCTCC
CCAATGTTCTGAAGGAACTGCCTGAGAATTTGAAATTATGTCCCGGAGTACATACCGAGGCCTTACTGGTGACTTTGGAAATGATGTGTCGGTCACAGAATTTTCATGATGGTGCCACAAAGTACAGG
TCAAGTTTCTAAACGTGGTCTGGTTTGCTTTGTAATTTAGTAGAGACTTCAGAGCTTACTGACAAATATGAATACGATTTATTTATTAACTGATTATTCAGATTTGTGAAATTTCAAAAACCCTTGAA
AAATTTCTGCAGAACTAAAATATAAGCTTCTATTTCCAGGATGTAGAATTTGATTAAGAAGTTTTTGAAAAAAAAGTTTTATTTGATTTTATTAATCTTTTATTAATAAATTGCTTTTATTAAGCCTT
TTGTTCT

hide sequence


Protein RefSeqs	XP_005382316	(Get FASTA)	NCBI Sequence Viewer
	XP_005382317	(Get FASTA)	NCBI Sequence Viewer
	XP_005382318	(Get FASTA)	NCBI Sequence Viewer
	XP_013368440	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000007338
	ENSCLAP00000007338.1

RefSeq Acc Id:

XP_005382316 ⟸ XM_005382259

- UniProtKB:

A0A8C2V033 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEDNAPKHVIQMTGFKMEEKEALGKLLLKLDCTFIKSEKYKNCTHLIAERLCKSEKFLAACAAGKWVLTKDYIIHSANSGRWLDETTYEWGYKIEKDSHYSPQMQSAPKRWREELKRSGAPGAFHRWK
VVLLVRADKRSDSLVRVLKAGKANVILPKSSPTGVTHVIASNARISAEKEKDTFNAPFYPIQYLGDFLLEREIQNDEDSQISSIGSKPSNQEKNNDFRKDTGVFEMKSALRETICRTQKEMQNHDEDV
CSAVSEHHKREKFRETREDLRFIKMRNTLRSHIYGNQKDTKKKYEDIQRSYTLRKKRKKETDCKKDIEHDKIKSTLRKQVCYTDQKEMNSSVFTDYAKESKPKDIRMDMDVVEIKNILRKHIYRAQAV
RYNCIRIEKQPVYNVEVKNADFPRGILNLIESLIEGQFFKEAMEELSSLQAHYVPPVCLLHSLLDSVLQDKIDTFSGRYFDILSALLRLHPPWKSPTMSRYYLELFQCPTCMKGPWSLVEALIRSCLF
NENFCHEISQNIDSKVFHLTLLKFFFSLVESEVQHLSQKLYDCSESQSLKTTGKAILLEIFWSGNETSGLLTKPVNMLLEWTMYSYKEKCKSNDVFRHELAYLLTGILGAAIDYWIFLGLKMGRNVMR
HLSEDLGSYISLTCDDFSSQELEIFICSFSSSWLQMFVAEAVFKKYFFDNSSELLSLQKMVNGYLRALGKASVHRAGKAHLPKKTGQRSCLESQRALLMLNGAKRKQGEGLPRLPELSLAKCSPSLKK
LKKKSEGESPWSKENCPSLKKMNIHKTNLKGETALHRACISNKVDKLILLLSLPGIDINVKDNAGWTPLHEACNYGNTVCVQEILQRCPEVDLLTQVDGVTPLHDALSNGHVEIGKLLLQHGGPVLLQ
QRNSKGELPLDYVLSPQIKEELFAIAKIEDTVENFHAQAEKHFYHQQLEFGSFLLSRMLLNFCSIFDLSSEFILAFQGLAHLNEQLMAYKSFKETTTAHTDWLLDLYDRNIKTLQELPNVLKELPENL
KLCPGVHTEALLVTLEMMCRSQNFHDGATKYRSSF

hide sequence

RefSeq Acc Id:

XP_005382317 ⟸ XM_005382260

- UniProtKB:

A0A8C2V033 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEDNAPKHVIQMTGFKMEEKEALGKLLLKLDCTFIKSEKYKNCTHLIAERLCKSEKFLAACAAG
KWVLTKDYIIHSANSGRWLDETTYEWGYKIEKDSHYSPQMQSAPKRWREELKRSGAPGAFHRWKVVLLVRADKRSDSLVRVLKAGKANVILPKSSPTGVTHVIASNARISAEKEKDTFNAPFYPIQYL
GDFLLEREIQNDEDSQISSIGSKPSNQEKNNDFRKDTGVFEMKSALRETICRTQKEMQNHDEDVCSAVSEHHKREKFRETREDLRFIKMRNTLRSHIYGNQKDTKKKYEDIQRSYTLRKKRKKETDCK
KDIEHDKIKSTLRKQVCYTDQKEMNSSVFTDYAKESKPKDIRMDMDVVEIKNILRKHIYRAQAVRYNCIRIEKQPVYNVEVKNADFPRGILNLIESLIEGQFFKEAMEELSSLQAHYVPPVCLLHSLL
DSVLQDKIDTFSGRYFDILSALLRLHPPWKSPTMSRYYLELFQCPTCMKGPWSLVEALIRSCLFNENFCHEISQNIDSKVFHLTLLKFFFSLVESEVQHLSQKLYDCSESQSLKTTGKAILLEIFWSG
NETSGLLTKPVNMLLEWTMYSYKEKCKSNDVFRHELAYLLTGILGAAIDYWIFLGLKMGRNVMRHLSEDLGSYISLTCDDFSSQELEIFICSFSSSWLQMFVAEAVFKKYFFDNSSELLSLQKMVNGY
LRALGKASVHRAGKAHLPKKTGQRSCLESQRALLMLNGAKRKQGEGLPRLPELSLAKCSPSLKKLKKKSEGESPWSKENCPSLKKMNIHKTNLKGETALHRACISNKVDKLILLLSLPGIDINVKDNA
GWTPLHEACNYGNTVCVQEILQRCPEVDLLTQVDGVTPLHDALSNGHVEIGKLLLQHGGPVLLQQRNSKGELPLDYVLSPQIKEELFAIAKIEDTVENFHAQAEKHFYHQQLEFGSFLLSRMLLNFCS
IFDLSSEFILAFQGLAHLNEQLMAYKSFKETTTAHTDWLLDLYDRNIKTLQELPNVLKELPENLKLCPGVHTEALLVTLEMMCRSQNFHDGATKYRSSF

hide sequence

RefSeq Acc Id:

XP_005382318 ⟸ XM_005382261

- UniProtKB:

A0A8C2V033 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEDNAPKHVIQMTGFKMEEKEALGKLLLKLDCTFIKSEKYKNCTHLIAERLCKSEKFLAACAAGKWVLTKDYIIHSANSGRWLDETTYEWGYKIEKDSHYSPQMQSAPKRWREELKRSGAPGAFHRWK
VVLLVRADKRSDSLVRVLKAGKANVILPKSSPTGVTHVIASNARISAEKEKDTFNAPFYPIQYLGDFLLEREIQNDEDSQISSIGSKPSNQEKNNDFRKDTGVFEMKSALRETICRTQKEMQNHDEDV
CSAVSEHHKREKFRETREDLRFIKMRNTLRSHIYGNQKDTKKKYEDIQRSYTLRKKRKKETDCKKDIEHDKIKSTLRKQVCYTDQKEMNSSVFTDYAKESKPKDIRMDMDVVEIKNILRKHIYRAQAV
RYNCIRIEKQPVYNVEVKNADFPRGILNLIESLIEGQFFKEAMEELSSLQAHYVPPVCLLHSLLDSVLQDKIDTFSGRYFDILSALLRLHPPWKSPTMSRYYLELFQCPTCMKGPWSLVEALIRSCLF
NENFCHEISQNIDSKVFHLTLLKFFFSLVESEVQHLSQKLYDCSESQSLKTTGKAILLEIFWSGNETSGLLTKPVNMLLEWTMYSYKEKCKSNDVFRHELAYLLTGILGAAIDYWIFLGLKMGRNVMR
HLSEDLGSYISLTCDDFSSQELEIFICSFSSSWLQMFVAEAVFKKYFFDNSSELLSLQKMVNGYLRALGKASVHRAGKAHLPKKTGQRSCLESQRALLMLNGAKRKQGEGLPRLPELSLAKCSPSLKK
LKKKSEGESPWSKENCPSLKKMNIHKTNLKGETALHRACISNKVDKLILLLSLPGIDINVKDNAGWTPLHEACNYGNTVCVQEILQRCPEVDLLTQVDGVTPLHDALSNGHVEIGKLLLQHGGPVLLQ
QRNSKGELPLDYVLSPQIKEELFAIAKIEDTVENFHAQAEKHFYHQQLEFGSFLLSRMLLNFCSIFDLSSEFILAFQGLAHLNEQLMAYKSFKETTTAHTDWLLDLYDRNIKTLQELPNVLKELPENL
KLCPGVHTEALLVTLEMMCRSQNFHDGATKYRSSF

hide sequence

RefSeq Acc Id:

XP_013368440 ⟸ XM_013512986

- UniProtKB:

A0A8C2V033 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEDNAPKHVIQMTGFKMEEKEALGKLLLKLDCTFIKSEKYKNCTHLIAERLCKSEKFLAACAAG
KWVLTKDYIIHSANSGRWLDETTYEWGYKIEKDSHYSPQMQSAPKRWREELKRSGAPGAFHRWKVVLLVRADKRSDSLVRVLKAGKANVILPKSSPTGVTHVIASNARISAEKEKDTFNAPFYPIQYL
GDFLLEREIQNDEDSQISSIGSKPSNQEKNNDFRKDTGVFEMKSALRETICRTQKEMQNHDEDVCSAVSEHHKREKFRETREDLRFIKMRNTLRSHIYGNQKDTKKKYEDIQRSYTLRKKRKKETDCK
KDIEHDKIKSTLRKQVCYTDQKEMNSSVFTDYAKESKPKDIRMDMDVVEIKNILRKHIYRAQAVRYNCIRIEKQPVYNVEVKNADFPRGILNLIESLIEGQFFKEAMEELSSLQAHYVPPVCLLHSLL
DSVLQDKIDTFSGRYFDILSALLRLHPPWKSPTMSRYYLELFQCPTCMKGPWSLVEALIRSCLFNENFCHEISQNIDSKVFHLTLLKFFFSLVESEVQHLSQKLYDCSESQSLKTTGKAILLEIFWSG
NETSGLLTKPVNMLLEWTMYSYKEKCKSNDVFRHELAYLLTGILGAAIDYWIFLGLKMGRNVMRHLSEDLGSYISLTCDDFSSQELEIFICSFSSSWLQMFVAEAVFKKYFFDNSSELLSLQKMVNGY
LRALGKASVHRAGKAHLPKKTGQRSCLESQRALLMLNGAKRKQGEGLPRLPELSLAKCSPSLKKLKKKSEGESPWSKENCPSLKKMNIHKTNLKGETALHRACISNKVDKLILLLSLPGIDINVKDNA
GWTPLHEACNYGNTVCVQEILQRCPEVDLLTQVDGVTPLHDALSNGHVEIGKLLLQHGGPVLLQQRNSKGELPLDYVLSPQIKEELFAIAKIEDTVENFHAQAEKHFYHQQLEFGSFLLSRMLLNFCS
IFDLSSEFILAFQGLAHLNEQLMAYKSFKETTTAHTDWLLDLYDRNIKTLQELPNVLKELPENLKLCPGVHTEALLVTLEMMCRSQNFHDGATKYRSSF

hide sequence

Ensembl Acc Id:

ENSCLAP00000007338 ⟸ ENSCLAT00000007455

Protein Domains

BRCT

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000005160	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000007455	ENTREZGENE
	ENSCLAT00000007455.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.20	UniProtKB/TrEMBL
	3.40.50.10190	UniProtKB/TrEMBL
InterPro	Ankyrin_rpt	UniProtKB/TrEMBL
	Ankyrin_rpt-contain_sf	UniProtKB/TrEMBL
	BRCT_dom	UniProtKB/TrEMBL
	BRCT_dom_sf	UniProtKB/TrEMBL
	BRCT_SLF1	UniProtKB/TrEMBL
	Slf1	UniProtKB/TrEMBL
NCBI Gene	Ankrd32	ENTREZGENE
PANTHER	PTHR46677	UniProtKB/TrEMBL
	SMC5-SMC6 COMPLEX LOCALIZATION FACTOR PROTEIN 1	UniProtKB/TrEMBL
Pfam	Ank_2	UniProtKB/TrEMBL
	RTT107_BRCT_5	UniProtKB/TrEMBL
PROSITE	ANK_REP_REGION	UniProtKB/TrEMBL
	ANK_REPEAT	UniProtKB/TrEMBL
SMART	ANK	UniProtKB/TrEMBL
	BRCT	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48403	UniProtKB/TrEMBL
	SSF52113	UniProtKB/TrEMBL
UniProt	A0A8C2V033	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-25	Slf1	SMC5-SMC6 complex localization factor 1	Ankrd32	ankyrin repeat domain 32	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar