Uxt (ubiquitously expressed prefoldin like chaperone) - Rat Genome Database

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Gene: Uxt (ubiquitously expressed prefoldin like chaperone) Chinchilla lanigera
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Symbol: Uxt
Name: ubiquitously expressed prefoldin like chaperone
RGD ID: 8987011
Description: ENCODES a protein that exhibits actin filament binding (ortholog); beta-tubulin binding (ortholog); chromatin binding (ortholog); INVOLVED IN centrosome cycle (ortholog); microtubule cytoskeleton organization (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitously-expressed, prefoldin-like chaperone
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955516420,616 - 430,134 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955516421,402 - 429,804 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Uxt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955516420,616 - 430,134 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955516421,402 - 429,804 (+)NCBIChiLan1.0ChiLan1.0
UXT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X47,651,796 - 47,659,180 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX47,651,796 - 47,659,180 (-)EnsemblGRCh38hg38GRCh38
GRCh37X47,511,195 - 47,518,579 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X47,396,139 - 47,403,504 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X47,267,449 - 47,274,770NCBI
CeleraX51,706,458 - 51,713,823 (-)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX45,223,944 - 45,231,332 (-)NCBIHuRef
CHM1_1X47,542,327 - 47,549,715 (-)NCBICHM1_1
T2T-CHM13v2.0X47,061,699 - 47,069,083 (-)NCBIT2T-CHM13v2.0
Uxt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X20,818,162 - 20,828,259 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX20,807,961 - 20,828,256 (-)EnsemblGRCm39 Ensembl
GRCm38X20,951,665 - 20,962,017 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX20,941,722 - 20,962,017 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X20,528,791 - 20,539,104 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X20,108,624 - 20,118,937 (-)NCBIMGSCv36mm8
CeleraX19,085,804 - 19,096,117 (-)NCBICelera
Cytogenetic MapXA1.3NCBI
cM MapX16.46NCBI
Uxt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X3,679,630 - 3,691,944 (+)NCBIGRCr8
mRatBN7.2X1,126,110 - 1,138,670 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX1,126,162 - 1,138,663 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX1,154,446 - 1,166,501 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X4,630,138 - 4,642,193 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X950,682 - 962,723 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X1,275,402 - 1,287,781 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX1,275,612 - 1,287,512 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X2,090,439 - 2,102,802 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X12,616,439 - 12,628,479 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X12,621,996 - 12,634,035 (-)NCBI
CeleraX1,695,268 - 1,707,300 (+)NCBICelera
Cytogenetic MapXq11NCBI
UXT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X49,278,273 - 49,285,734 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X49,281,645 - 49,289,111 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X40,087,712 - 40,095,164 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X47,983,770 - 47,991,169 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX47,983,770 - 47,991,148 (-)Ensemblpanpan1.1panPan2
UXT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X41,271,908 - 41,280,433 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX41,271,908 - 41,280,340 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX15,646,536 - 15,655,076 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X41,405,725 - 41,413,955 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX41,405,719 - 41,413,934 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X41,393,272 - 41,401,810 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X41,381,544 - 41,390,081 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X41,474,238 - 41,482,772 (-)NCBIUU_Cfam_GSD_1.0
Uxt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X33,577,677 - 33,587,087 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650213,418,403 - 13,427,767 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650213,419,520 - 13,427,777 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UXT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX42,176,145 - 42,184,079 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X42,176,142 - 42,184,131 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,294,749 - 47,302,738 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UXT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X44,828,836 - 44,836,433 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX44,828,841 - 44,835,985 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607610,083,180 - 10,090,625 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Uxt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624978208,432 - 217,497 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624978209,222 - 216,909 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000002301   ⟹   ENSCLAP00000002254
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955516420,616 - 430,134 (+)Ensembl
RefSeq Acc Id: XM_005408943   ⟹   XP_005409000
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955516421,402 - 429,804 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005409000 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000002254
  ENSCLAP00000002254.1
RefSeq Acc Id: XP_005409000   ⟸   XM_005408943
- UniProtKB: A0A8C2YJ14 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000002254   ⟸   ENSCLAT00000002301


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001626 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000002301 ENTREZGENE
  ENSCLAT00000002301.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.370 UniProtKB/TrEMBL
InterPro Prefoldin UniProtKB/TrEMBL
  Prefoldin_subunit_alpha UniProtKB/TrEMBL
  UXT UniProtKB/TrEMBL
NCBI Gene Uxt ENTREZGENE
PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10 UniProtKB/TrEMBL
  PROTEIN UXT UniProtKB/TrEMBL
Pfam Prefoldin UniProtKB/TrEMBL
PRINTS UXTPROTEIN UniProtKB/TrEMBL
Superfamily-SCOP Prefoldin UniProtKB/TrEMBL
UniProt A0A8C2YJ14 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Uxt  ubiquitously expressed prefoldin like chaperone    ubiquitously-expressed, prefoldin-like chaperone  Symbol and/or name change 5135510 APPROVED