Tcfl5 (transcription factor like 5) - Rat Genome Database

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Gene: Tcfl5 (transcription factor like 5) Chinchilla lanigera
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Symbol: Tcfl5
Name: transcription factor like 5
RGD ID: 8982989
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of cell differentiation (ortholog); regulation of cell population proliferation (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN male germ cell nucleus (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcription factor-like 5 (basic helix-loop-helix)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555281,269,387 - 1,286,124 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tcfl5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555281,269,387 - 1,286,124 (+)NCBIChiLan1.0ChiLan1.0
TCFL5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382062,841,005 - 62,861,822 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2062,841,005 - 62,861,822 (-)EnsemblGRCh38hg38GRCh38
GRCh372061,472,357 - 61,493,174 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362060,942,912 - 60,963,560 (-)NCBINCBI36Build 36hg18NCBI36
Build 342060,942,912 - 60,963,560NCBI
Celera2058,148,498 - 58,169,147 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2058,190,512 - 58,209,710 (-)NCBIHuRef
CHM1_12061,373,384 - 61,393,975 (-)NCBICHM1_1
T2T-CHM13v2.02064,640,566 - 64,661,385 (-)NCBIT2T-CHM13v2.0
Tcfl5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392180,263,749 - 180,284,540 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2180,263,749 - 180,284,501 (-)EnsemblGRCm39 Ensembl
GRCm382180,621,956 - 180,642,691 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,621,956 - 180,642,708 (-)EnsemblGRCm38mm10GRCm38
MGSCv372180,356,661 - 180,377,396 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362180,551,368 - 180,571,890 (-)NCBIMGSCv36mm8
Celera2184,707,790 - 184,728,427 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.16NCBI
Tcfl5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,112,037 - 188,131,883 (-)NCBIGRCr8
mRatBN7.23167,734,471 - 167,754,174 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,734,473 - 167,754,282 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.03176,124,846 - 176,144,531 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3176,125,482 - 176,144,531 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03179,825,531 - 179,851,570 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,712,264 - 169,731,865 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13169,618,303 - 169,637,880 (-)NCBI
Celera3164,821,793 - 164,848,082 (+)NCBICelera
Cytogenetic Map3q43NCBI
TCFL5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22168,629,428 - 68,650,235 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12068,622,548 - 68,643,356 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02059,229,243 - 59,250,033 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12060,522,153 - 60,541,900 (-)NCBIpanpan1.1PanPan1.1panPan2
TCFL5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,669,195 - 46,683,288 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2445,853,456 - 45,869,126 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,541,887 - 47,557,554 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,541,889 - 47,557,774 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,639,493 - 46,655,193 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02446,762,856 - 46,778,485 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,518,794 - 47,534,467 (-)NCBIUU_Cfam_GSD_1.0
Tcfl5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640194,887,277 - 194,904,711 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651410,341,578 - 10,358,380 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651410,340,920 - 10,358,354 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCFL5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,093,907 - 62,115,650 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,093,906 - 62,115,669 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TCFL5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121,364,343 - 1,385,111 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605049,194,413 - 49,238,931 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcfl5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474128,610,653 - 28,628,777 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474128,610,637 - 28,628,777 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_005410055   ⟹   XP_005410112
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555281,269,387 - 1,286,124 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013507458   ⟹   XP_013362912
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555281,269,387 - 1,279,626 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013507459   ⟹   XP_013362913
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555281,269,387 - 1,279,626 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013507460   ⟹   XP_013362914
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555281,269,387 - 1,279,626 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013507461   ⟹   XP_013362915
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555281,269,387 - 1,279,626 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013507462   ⟹   XP_013362916
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555281,269,387 - 1,286,124 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013507463   ⟹   XP_013362917
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555281,269,387 - 1,274,932 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005410112   ⟸   XM_005410055
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013362916   ⟸   XM_013507462
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013362912   ⟸   XM_013507458
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013362913   ⟸   XM_013507459
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013362914   ⟸   XM_013507460
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013362915   ⟸   XM_013507461
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013362917   ⟸   XM_013507463
- Peptide Label: isoform X7
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Tcfl5 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Tcfl5  transcription factor like 5    transcription factor-like 5 (basic helix-loop-helix)  Symbol and/or name change 5135510 APPROVED