B3gnt3 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3) - Rat Genome Database

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Gene: B3gnt3 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3) Chinchilla lanigera
Analyze
Symbol: B3gnt3
Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3
RGD ID: 8966777
Description: ENCODES a protein that exhibits N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN poly-N-acetyllactosamine biosynthetic process (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555243,433,571 - 3,436,941 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555243,432,797 - 3,436,941 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
B3gnt3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555243,433,571 - 3,436,941 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555243,432,797 - 3,436,941 (-)NCBIChiLan1.0ChiLan1.0
B3GNT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381917,794,791 - 17,813,576 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1917,794,828 - 17,813,576 (+)EnsemblGRCh38hg38GRCh38
GRCh371917,905,947 - 17,924,385 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,766,919 - 17,785,385 (+)NCBINCBI36Build 36hg18NCBI36
Build 341917,766,948 - 17,784,890NCBI
Celera1917,807,662 - 17,826,113 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1917,471,377 - 17,489,827 (+)NCBIHuRef
CHM1_11917,905,451 - 17,923,918 (+)NCBICHM1_1
T2T-CHM13v2.01917,928,853 - 17,947,690 (+)NCBIT2T-CHM13v2.0
B3gnt3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,144,017 - 72,155,270 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl872,143,400 - 72,154,433 (-)EnsemblGRCm39 Ensembl
GRCm38871,691,373 - 71,702,626 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,690,756 - 71,701,789 (-)EnsemblGRCm38mm10GRCm38
MGSCv37874,215,618 - 74,225,699 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36874,620,708 - 74,630,781 (-)NCBIMGSCv36mm8
Celera874,206,265 - 74,216,238 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.43NCBI
B3gnt3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,434,114 - 18,444,851 (-)NCBIGRCr8
mRatBN7.21618,401,405 - 18,410,821 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,401,405 - 18,410,766 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,452,045 - 18,461,361 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,584,655 - 19,593,981 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,504,984 - 18,514,300 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,123,948 - 20,133,482 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,123,948 - 20,133,322 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,984,402 - 19,994,118 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,892,320 - 18,901,908 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11618,893,248 - 18,894,532 (-)NCBI
Celera1618,604,001 - 18,613,336 (-)NCBICelera
Cytogenetic Map16p14NCBI
B3GNT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22022,669,117 - 22,680,080 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11921,675,947 - 21,686,889 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01917,277,686 - 17,295,646 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11918,252,347 - 18,270,388 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,252,347 - 18,270,161 (+)Ensemblpanpan1.1panPan2
B3GNT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,075,146 - 45,093,480 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,076,403 - 45,080,942 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2044,987,325 - 45,005,394 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,560,510 - 45,578,792 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2045,561,547 - 45,578,824 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12044,796,918 - 44,815,190 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02045,207,199 - 45,225,252 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,483,168 - 45,501,270 (-)NCBIUU_Cfam_GSD_1.0
B3GNT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,934,958 - 59,952,859 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1259,934,948 - 59,952,861 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,504,383 - 59,522,285 (-)NCBISscrofa10.2Sscrofa10.2susScr3
B3GNT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1616,267,996 - 16,286,819 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl616,281,579 - 16,285,892 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660743,102,798 - 3,121,482 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B3gnt3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,350,779 - 1,355,732 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249081,340,829 - 1,356,435 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011586   ⟹   ENSCLAP00000011449
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555243,433,571 - 3,436,941 (-)Ensembl
RefSeq Acc Id: XM_005409543   ⟹   XP_005409600
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555243,432,797 - 3,436,941 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005409600 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011449
  ENSCLAP00000011449.1
Reference Protein Sequences
RefSeq Acc Id: XP_005409600   ⟸   XM_005409543
- UniProtKB: A0A8C2YNE4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000011449   ⟸   ENSCLAT00000011586


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007898 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011586 ENTREZGENE
  ENSCLAT00000011586.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.50 UniProtKB/TrEMBL
InterPro Glyco_trans_31 UniProtKB/TrEMBL
NCBI Gene B3gnt3 ENTREZGENE
PANTHER N-ACETYLLACTOSAMINIDE BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 3 UniProtKB/TrEMBL
  PTHR11214 UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/TrEMBL
UniProt A0A8C2YNE4 ENTREZGENE, UniProtKB/TrEMBL