B3gnt3 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3) - Rat Genome Database
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Gene: B3gnt3 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3) Mus musculus
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Symbol: B3gnt3
Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3
RGD ID: 1313013
MGI Page MGI
Description: Predicted to have N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity and acetylgalactosaminyltransferase activity. Predicted to be involved in poly-N-acetyllactosamine biosynthetic process and protein glycosylation. Predicted to localize to Golgi apparatus. Is expressed in several structures, including alimentary system; brain; genitourinary system; immune system; and liver and biliary system. Orthologous to human B3GNT3 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3); PARTICIPATES IN lacto-series glycosphingolipid metabolic pathway; INTERACTS WITH acrylamide; benzo[a]pyrene; carbon nanotube.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2210008L19Rik; beta-1,3-Gn-T3; beta-1,3-N-acetylglucosaminyltransferase 3; beta3Gn-T3; BGnT-3; core 1 beta-1,3-N-acetylglucosaminyltransferase; core 1 extending beta-1,3-N-acetylglucosaminyltransferase; core1-beta3GlcNAcT; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,144,017 - 72,155,270 (-)NCBIGRCm39mm39
GRCm38871,691,373 - 71,702,626 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,690,756 - 71,701,789 (-)EnsemblGRCm38mm10GRCm38
MGSCv37874,215,618 - 74,225,699 (-)NCBIGRCm37mm9NCBIm37
MGSCv36874,620,708 - 74,630,781 (-)NCBImm8
Celera874,206,265 - 74,216,238 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14681479   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635  


Genomics

Comparative Map Data
B3gnt3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,144,017 - 72,155,270 (-)NCBIGRCm39mm39
GRCm38871,691,373 - 71,702,626 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,690,756 - 71,701,789 (-)EnsemblGRCm38mm10GRCm38
MGSCv37874,215,618 - 74,225,699 (-)NCBIGRCm37mm9NCBIm37
MGSCv36874,620,708 - 74,630,781 (-)NCBImm8
Celera874,206,265 - 74,216,238 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
B3GNT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1917,794,828 - 17,813,576 (+)EnsemblGRCh38hg38GRCh38
GRCh381917,794,828 - 17,813,576 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371917,905,919 - 17,924,385 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,766,919 - 17,785,385 (+)NCBINCBI36hg18NCBI36
Build 341917,766,948 - 17,784,890NCBI
Celera1917,807,662 - 17,826,113 (+)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1917,471,377 - 17,489,827 (+)NCBIHuRef
CHM1_11917,905,451 - 17,923,918 (+)NCBICHM1_1
B3gnt3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01620,123,948 - 20,133,482 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,123,948 - 20,133,322 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,984,402 - 19,994,118 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,892,320 - 18,901,908 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11618,893,248 - 18,894,532 (-)NCBI
Celera1618,604,001 - 18,613,336 (-)NCBICelera
Cytogenetic Map16p14NCBI
B3gnt3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555243,433,571 - 3,436,941 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555243,432,797 - 3,436,941 (-)NCBIChiLan1.0ChiLan1.0
B3GNT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11918,252,347 - 18,270,388 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,252,347 - 18,270,161 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01917,277,686 - 17,295,646 (+)NCBIMhudiblu_PPA_v0panPan3
B3GNT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2045,076,403 - 45,080,942 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12045,075,146 - 45,093,480 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
B3gnt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365963,231,799 - 3,232,939 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GNT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,934,958 - 59,952,859 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1259,934,948 - 59,952,861 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,504,383 - 59,522,285 (-)NCBISscrofa10.2Sscrofa10.2susScr3
B3GNT3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1616,267,996 - 16,286,819 (+)NCBI
ChlSab1.1 Ensembl616,281,579 - 16,285,892 (+)Ensembl
B3gnt3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249081,340,829 - 1,356,435 (+)NCBI

Position Markers
BB146949  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,691,774 - 71,691,876UniSTSGRCm38
MGSCv37874,215,673 - 74,215,775UniSTSGRCm37
Celera874,206,320 - 74,206,422UniSTS
Cytogenetic Map8C1UniSTS
Whitehead/MRC_RH8762.74UniSTS
B3gnt3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,693,106 - 71,693,391UniSTSGRCm38
MGSCv37874,217,005 - 74,217,290UniSTSGRCm37
Celera874,207,652 - 74,207,937UniSTS
Cytogenetic Map8C1UniSTS
cM Map8 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:370
Count of miRNA genes:263
Interacting mature miRNAs:302
Transcripts:ENSMUST00000034260
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000034260   ⟹   ENSMUSP00000034260
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,690,756 - 71,701,789 (-)Ensembl
RefSeq Acc Id: NM_028189   ⟹   NP_082465
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,144,363 - 72,154,444 (-)NCBI
GRCm38871,691,719 - 71,701,800 (-)NCBI
MGSCv37874,215,618 - 74,225,699 (-)RGD
Celera874,206,265 - 74,216,238 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006509752   ⟹   XP_006509815
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,144,017 - 72,154,472 (-)NCBI
GRCm38871,691,373 - 71,701,828 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006509753   ⟹   XP_006509816
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,144,017 - 72,155,270 (-)NCBI
GRCm38871,691,373 - 71,702,626 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_082465   ⟸   NM_028189
- Peptide Label: precursor
- UniProtKB: Q5JCS9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509816   ⟸   XM_006509753
- Peptide Label: isoform X1
- UniProtKB: Q5JCS9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509815   ⟸   XM_006509752
- Peptide Label: isoform X1
- UniProtKB: Q5JCS9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000034260   ⟸   ENSMUST00000034260

Promoters
RGD ID:8667435
Promoter ID:EPDNEW_M11748
Type:initiation region
Name:B3gnt3_1
Description:Mus musculus UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38871,701,802 - 71,701,862EPDNEW
RGD ID:6842819
Promoter ID:MM_KWN:54818
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:ENSMUST00000034260
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36874,225,351 - 74,225,851 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2152535 AgrOrtholog
Ensembl Genes ENSMUSG00000031803 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000034260 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000034260 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Glyco_trans_31 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72297 UniProtKB/Swiss-Prot
MGD MGI:2152535 ENTREZGENE
NCBI Gene 72297 ENTREZGENE
PANTHER PTHR11214 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen B3gnt3 PhenoGen
UniGene Mm.290837 ENTREZGENE
UniProt B3GN3_MOUSE UniProtKB/Swiss-Prot
  Q3UNJ7_MOUSE UniProtKB/TrEMBL
  Q3UNN7_MOUSE UniProtKB/TrEMBL
  Q5JCS9 ENTREZGENE
UniProt Secondary Q8R0U2 UniProtKB/Swiss-Prot
  Q9D7Z2 UniProtKB/Swiss-Prot