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Gene: B3gnt3 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3) Mus musculus

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Symbol:

B3gnt3

Name:

UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3

RGD ID:

1313013

MGI Page

MGI

Description:

Predicted to enable N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity. Predicted to be involved in poly-N-acetyllactosamine biosynthetic process and protein O-linked glycosylation. Predicted to be active in Golgi membrane. Is expressed in several structures, including alimentary system; brain; genitourinary system; immune system; and liver and biliary system. Orthologous to human B3GNT3 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

2210008L19Rik; beta-1,3-Gn-T3; beta-1,3-N-acetylglucosaminyltransferase 3; beta3Gn-T3; BGnT-3; core 1 beta-1,3-N-acetylglucosaminyltransferase; core 1 extending beta-1,3-N-acetylglucosaminyltransferase; core1-beta3GlcNAcT; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	72,144,017 - 72,155,270 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	72,143,400 - 72,154,433 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	71,691,373 - 71,702,626 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	71,690,756 - 71,701,789 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	74,215,618 - 74,225,699 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	74,620,708 - 74,630,781 (-)	NCBI		MGSCv36	mm8
Celera	8	74,206,265 - 74,216,238 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	34.43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
B3gnt3	Mouse	17alpha-ethynylestradiol	increases expression	ISO	RGD:1305151	6480464	Ethinyl Estradiol results in increased expression of B3GNT3 mRNA	CTD	PMID:17557909
B3gnt3	Mouse	2-hydroxypropanoic acid	decreases expression	ISO	RGD:1313012	6480464	Lactic Acid results in decreased expression of B3GNT3 mRNA	CTD	PMID:30851411
B3gnt3	Mouse	4-nonylphenol	multiple interactions	ISO	RGD:1313012	6480464	[4-tert-octylphenol co-treated with 4-nonylphenol] results in increased expression of B3GNT3 mRNA	CTD	PMID:23626723
B3gnt3	Mouse	4-tert-Octylphenol	multiple interactions	ISO	RGD:1313012	6480464	[4-tert-octylphenol co-treated with 4-nonylphenol] results in increased expression of B3GNT3 mRNA	CTD	PMID:23626723
B3gnt3	Mouse	acrylamide	increases expression	EXP		6480464	Acrylamide results in increased expression of B3GNT3 mRNA	CTD	PMID:30807115
B3gnt3	Mouse	arsenous acid	decreases response to substance	ISO	RGD:1313012	6480464	B3GNT3 protein results in decreased susceptibility to Arsenic Trioxide	CTD	PMID:20707922
B3gnt3	Mouse	Azaspiracid	increases expression	ISO	RGD:1313012	6480464	azaspiracid results in increased expression of B3GNT3 mRNA	CTD	PMID:28939011
B3gnt3	Mouse	Azoxymethane	multiple interactions	EXP		6480464	[titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in increased expression of B3GNT3 more ...	CTD	PMID:29950665
B3gnt3	Mouse	benzo[a]pyrene	increases expression	ISO	RGD:1313012	6480464	Benzo(a)pyrene results in increased expression of B3GNT3 mRNA	CTD	PMID:22316170\|PMID:26238291
B3gnt3	Mouse	benzo[a]pyrene	increases methylation	ISO	RGD:1313012	6480464	Benzo(a)pyrene results in increased methylation of B3GNT3 3' UTR	CTD	PMID:27901495
B3gnt3	Mouse	benzo[a]pyrene	affects methylation	ISO	RGD:1313012	6480464	Benzo(a)pyrene affects the methylation of B3GNT3 5' UTR; Benzo(a)pyrene affects the methylation of B3GNT3 promoter	CTD	PMID:27901495
B3gnt3	Mouse	benzo[a]pyrene	increases expression	EXP		6480464	Benzo(a)pyrene results in increased expression of B3GNT3 mRNA	CTD	PMID:32417428
B3gnt3	Mouse	bisphenol A	decreases expression	ISO	RGD:1305151	6480464	bisphenol A results in decreased expression of B3GNT3 mRNA	CTD	PMID:25181051
B3gnt3	Mouse	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of B3GNT3 mRNA	CTD	PMID:34585602
B3gnt3	Mouse	cadmium dichloride	decreases expression	ISO	RGD:1313012	6480464	Cadmium Chloride results in decreased expression of B3GNT3 mRNA	CTD	PMID:38382870
B3gnt3	Mouse	carbon nanotube	increases expression	EXP		6480464	Nanotubes, Carbon analog results in increased expression of B3GNT3 mRNA; Nanotubes, Carbon results in increased more ...	CTD	PMID:25554681
B3gnt3	Mouse	cisplatin	multiple interactions	ISO	RGD:1313012	6480464	[Cisplatin co-treated with jinfukang] results in increased expression of B3GNT3 mRNA	CTD	PMID:27392435
B3gnt3	Mouse	copper atom	decreases expression	ISO	RGD:1305151	6480464	Copper results in decreased expression of B3GNT3 mRNA	CTD	PMID:30556269
B3gnt3	Mouse	copper(0)	decreases expression	ISO	RGD:1305151	6480464	Copper results in decreased expression of B3GNT3 mRNA	CTD	PMID:30556269
B3gnt3	Mouse	copper(II) sulfate	increases expression	ISO	RGD:1313012	6480464	Copper Sulfate results in increased expression of B3GNT3 mRNA	CTD	PMID:19549813
B3gnt3	Mouse	Cuprizon	decreases expression	ISO	RGD:1305151	6480464	Cuprizone results in decreased expression of B3GNT3 mRNA	CTD	PMID:27523638
B3gnt3	Mouse	cyclosporin A	increases expression	ISO	RGD:1313012	6480464	Cyclosporine results in increased expression of B3GNT3 mRNA	CTD	PMID:25562108
B3gnt3	Mouse	DDE	decreases expression	ISO	RGD:1313012	6480464	Dichlorodiphenyl Dichloroethylene results in decreased expression of B3GNT3 mRNA	CTD	PMID:38568856
B3gnt3	Mouse	dextran sulfate	multiple interactions	EXP		6480464	[titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in increased expression of B3GNT3 more ...	CTD	PMID:29950665
B3gnt3	Mouse	diarsenic trioxide	decreases response to substance	ISO	RGD:1313012	6480464	B3GNT3 protein results in decreased susceptibility to Arsenic Trioxide	CTD	PMID:20707922
B3gnt3	Mouse	epoxiconazole	decreases expression	EXP		6480464	epoxiconazole results in decreased expression of B3GNT3 mRNA	CTD	PMID:35436446
B3gnt3	Mouse	folic acid	increases expression	EXP		6480464	Folic Acid results in increased expression of B3GNT3 mRNA	CTD	PMID:25629700
B3gnt3	Mouse	genistein	decreases expression	EXP		6480464	Genistein results in decreased expression of B3GNT3 mRNA	CTD	PMID:32186404
B3gnt3	Mouse	hydrogen peroxide	affects expression	ISO	RGD:1313012	6480464	Hydrogen Peroxide affects the expression of B3GNT3 mRNA	CTD	PMID:20044591
B3gnt3	Mouse	inulin	multiple interactions	EXP		6480464	[perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of B3GNT3 mRNA	CTD	PMID:36331819
B3gnt3	Mouse	lead diacetate	decreases expression	ISO	RGD:1313012	6480464	lead acetate results in decreased expression of B3GNT3 mRNA	CTD	PMID:38568856
B3gnt3	Mouse	leflunomide	increases expression	ISO	RGD:1313012	6480464	leflunomide results in increased expression of B3GNT3 mRNA	CTD	PMID:28988120
B3gnt3	Mouse	lipopolysaccharide	multiple interactions	ISO	RGD:1313012	6480464	[S-(1,2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of B3GNT3 mRNA; [S-(1,2-dichlorovinyl)cysteine more ...	CTD	PMID:35811015
B3gnt3	Mouse	lipopolysaccharide	decreases expression	ISO	RGD:1313012	6480464	Lipopolysaccharides results in decreased expression of B3GNT3 mRNA	CTD	PMID:35811015
B3gnt3	Mouse	methotrexate	affects response to substance	ISO	RGD:1313012	6480464	B3GNT3 protein affects the susceptibility to Methotrexate	CTD	PMID:16217747
B3gnt3	Mouse	O-methyleugenol	increases expression	ISO	RGD:1313012	6480464	methyleugenol results in increased expression of B3GNT3 mRNA	CTD	PMID:32234424
B3gnt3	Mouse	p-tert-Amylphenol	multiple interactions	ISO	RGD:1313012	6480464	[4-tert-octylphenol co-treated with 4-nonylphenol] results in increased expression of B3GNT3 mRNA	CTD	PMID:23626723
B3gnt3	Mouse	paracetamol	decreases expression	ISO	RGD:1313012	6480464	Acetaminophen results in decreased expression of B3GNT3 mRNA	CTD	PMID:29067470
B3gnt3	Mouse	paracetamol	decreases expression	ISO	RGD:1305151	6480464	Acetaminophen results in decreased expression of B3GNT3 mRNA	CTD	PMID:33387578
B3gnt3	Mouse	perfluorooctane-1-sulfonic acid	multiple interactions	EXP		6480464	[perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of B3GNT3 mRNA	CTD	PMID:36331819
B3gnt3	Mouse	rac-lactic acid	decreases expression	ISO	RGD:1313012	6480464	Lactic Acid results in decreased expression of B3GNT3 mRNA	CTD	PMID:30851411
B3gnt3	Mouse	resveratrol	multiple interactions	ISO	RGD:1313012	6480464	[Plant Extracts co-treated with Resveratrol] results in decreased expression of B3GNT3 mRNA	CTD	PMID:23557933
B3gnt3	Mouse	S-(1,2-dichlorovinyl)-L-cysteine	multiple interactions	ISO	RGD:1313012	6480464	[S-(1,2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of B3GNT3 mRNA; [S-(1,2-dichlorovinyl)cysteine more ...	CTD	PMID:35811015
B3gnt3	Mouse	silicon dioxide	decreases expression	ISO	RGD:1313012	6480464	Silicon Dioxide analog results in decreased expression of B3GNT3 mRNA	CTD	PMID:25895662
B3gnt3	Mouse	sodium arsenite	decreases expression	ISO	RGD:1313012	6480464	sodium arsenite results in decreased expression of B3GNT3 mRNA	CTD	PMID:29301061\|PMID:32844245\|PMID:38568856
B3gnt3	Mouse	sodium arsenite	increases methylation	ISO	RGD:1313012	6480464	sodium arsenite results in increased methylation of B3GNT3 intron	CTD	PMID:32844245
B3gnt3	Mouse	sodium dodecyl sulfate	increases expression	ISO	RGD:1313012	6480464	Sodium Dodecyl Sulfate results in increased expression of B3GNT3 mRNA	CTD	PMID:31734321
B3gnt3	Mouse	thiram	decreases expression	ISO	RGD:1313012	6480464	Thiram results in decreased expression of B3GNT3 mRNA	CTD	PMID:38568856
B3gnt3	Mouse	titanium dioxide	multiple interactions	EXP		6480464	[titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in increased expression of B3GNT3 more ...	CTD	PMID:29950665
B3gnt3	Mouse	titanium dioxide	increases methylation	EXP		6480464	titanium dioxide results in increased methylation of B3GNT3 gene	CTD	PMID:35295148
B3gnt3	Mouse	titanium dioxide	decreases methylation	EXP		6480464	titanium dioxide results in decreased methylation of B3GNT3 gene	CTD	PMID:35295148
B3gnt3	Mouse	tributylstannane	increases expression	EXP		6480464	tributyltin results in increased expression of B3GNT3 mRNA	CTD	PMID:31939706
B3gnt3	Mouse	trichloroethene	increases expression	ISO	RGD:1305151	6480464	Trichloroethylene results in increased expression of B3GNT3 mRNA	CTD	PMID:33387578
B3gnt3	Mouse	tris(2-butoxyethyl) phosphate	affects expression	ISO	RGD:1313012	6480464	tris(2-butoxyethyl) phosphate affects the expression of B3GNT3 mRNA	CTD	PMID:29024780

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
B3gnt3	Mouse	poly-N-acetyllactosamine biosynthetic process	involved_in	ISO	UniProtKB:Q9Y2A9	2290270		GO_Central	GO_REF:0000119
B3gnt3	Mouse	poly-N-acetyllactosamine biosynthetic process	involved_in	IBA	PANTHER:PTN008317874\|UniProtKB:Q9Y2A9\|UniProtKB:Q7Z7M8\|UniProtKB:Q9NY97\|UniProtKB:Q9C0J1	2290270		GO_Central	GO_REF:0000033
B3gnt3	Mouse	poly-N-acetyllactosamine biosynthetic process	involved_in	ISS	UniProtKB:Q9Y2A9	2290270		UniProt	GO_REF:0000024
B3gnt3	Mouse	protein glycosylation	involved_in	IEA	UniPathway:UPA00378	2290270		UniProt	GO_REF:0000041
B3gnt3	Mouse	protein O-linked glycosylation	involved_in	IBA	PANTHER:PTN000130250\|UniProtKB:Q8NCR0	2290270		GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
B3gnt3	Mouse	Golgi membrane	is_active_in	IBA	PANTHER:PTN000130249\|MGI:1349403\|TAIR:locus:2038031	2290270		GO_Central	GO_REF:0000033
B3gnt3	Mouse	Golgi membrane	located_in	IEA	UniProtKB-SubCell:SL-0134	2290270		UniProt	GO_REF:0000044

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
B3gnt3	Mouse	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity	enables	IEA	EC:2.4.1.146	2290270		UniProt	GO_REF:0000003
B3gnt3	Mouse	N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity	enables	ISS	UniProtKB:Q9Y2A9	2290270		UniProt	GO_REF:0000024
B3gnt3	Mouse	N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity	enables	IBA	PANTHER:PTN000130457\|UniProtKB:Q9Y2A9	2290270		GO_Central	GO_REF:0000033
B3gnt3	Mouse	N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity	enables	ISO	UniProtKB:Q9Y2A9	2290270		GO_Central	GO_REF:0000119

Imported Annotations - KEGG (archival)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
B3gnt3	Mouse	lacto-series glycosphingolipid metabolic pathway		IEA		6907045		KEGG	mmu:00601

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
B3gnt3	Mouse	decreased thermal nociceptive threshold		IEA		5509061		MGI

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	MGD IEA	MGD IEA
4.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:10349636	PMID:11042159	PMID:11076861	PMID:12477932	PMID:14681479	PMID:15489334	PMID:16141072	PMID:16141073	PMID:18799693	PMID:21267068	PMID:21677750	PMID:21873635
PMID:37196079

B3gnt3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	72,144,017 - 72,155,270 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	72,143,400 - 72,154,433 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	71,691,373 - 71,702,626 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	71,690,756 - 71,701,789 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	74,215,618 - 74,225,699 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	74,620,708 - 74,630,781 (-)	NCBI		MGSCv36	mm8
Celera	8	74,206,265 - 74,216,238 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	34.43	NCBI

B3GNT3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	17,794,791 - 17,813,576 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	17,794,828 - 17,813,576 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	17,905,947 - 17,924,385 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	17,766,919 - 17,785,385 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	17,766,948 - 17,784,890	NCBI
Celera	19	17,807,662 - 17,826,113 (+)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	17,471,377 - 17,489,827 (+)	NCBI		HuRef
CHM1_1	19	17,905,451 - 17,923,918 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	17,928,853 - 17,947,690 (+)	NCBI		T2T-CHM13v2.0

B3gnt3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	18,434,114 - 18,444,851 (-)	NCBI		GRCr8
mRatBN7.2	16	18,401,405 - 18,410,821 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	18,401,405 - 18,410,766 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	18,452,045 - 18,461,361 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	19,584,655 - 19,593,981 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	18,504,984 - 18,514,300 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	20,123,948 - 20,133,482 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	20,123,948 - 20,133,322 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	19,984,402 - 19,994,118 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	18,892,320 - 18,901,908 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	18,893,248 - 18,894,532 (-)	NCBI
Celera	16	18,604,001 - 18,613,336 (-)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

B3gnt3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	3,433,571 - 3,436,941 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	3,432,797 - 3,436,941 (-)	NCBI	ChiLan1.0	ChiLan1.0

B3GNT3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	22,669,117 - 22,680,080 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	21,675,947 - 21,686,889 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	17,277,686 - 17,295,646 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	18,252,347 - 18,270,388 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	18,252,347 - 18,270,161 (+)	Ensembl	panpan1.1		panPan2

B3GNT3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	45,075,146 - 45,093,480 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	45,076,403 - 45,080,942 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	44,987,325 - 45,005,394 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	45,560,510 - 45,578,792 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	45,561,547 - 45,578,824 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	44,796,918 - 44,815,190 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	45,207,199 - 45,225,252 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	45,483,168 - 45,501,270 (-)	NCBI		UU_Cfam_GSD_1.0

B3GNT3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	59,934,958 - 59,952,859 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	59,934,948 - 59,952,861 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	59,504,383 - 59,522,285 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

B3GNT3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	16,267,996 - 16,286,819 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	16,281,579 - 16,285,892 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	3,102,798 - 3,121,482 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

B3gnt3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	1,350,779 - 1,355,732 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624908	1,340,829 - 1,356,435 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in B3gnt3
856 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	370
Count of miRNA genes:	263
Interacting mature miRNAs:	302
Transcripts:	ENSMUST00000034260
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	66326836	100326976	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36630154	93455280	Mouse
1301717	Adip4_m	adiposity 4 (mouse)			Not determined		8	48090064	82090180	Mouse
1357715	Alaa3_m	alopecia areata 3 (mouse)			Not determined		8	49245591	83245673	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58928107	92928107	Mouse
14746987	Manh64_m	mandible shape 64 (mouse)					8	50505958	84505958	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	35109930	115563747	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	66084397	100084549	Mouse
10766453	Char11_m	P. chabaudi malaria resistance QTL 11 (mouse)					8	48090064	82090180	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54740461	88740637	Mouse
1301441	Skull11_m	skull morphology 11 (mouse)			Not determined		8	48190168	82190288	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	55159258	89159407	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	71032003	105032123	Mouse
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32506572	117965439	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71740461	124622354	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			64186736	98186736	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	64666176	98666325	Mouse
14747005	Mancz7_m	mandible centroid size 7 (mouse)					8	50505958	84505958	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37867154	110326632	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	59136404	93136404	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	56298872	90298872	Mouse
1301872	Cd4ts3_m	CD4 T cell subset 3 (mouse)			Not determined		8	72122809	106123021	Mouse
10766466	Char12_m	P. chabaudi malaria resistance QTL 12 (mouse)					8	68722479	83326976	Mouse
11039503	Ccc4_m	colitis susceptibility in the Collaborative Cross 4 (mouse)					8	65174237	78002730	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	61513479	95513605	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71829531	105829637	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	40162297	95416226	Mouse
4141395	Char2a_m	P. chabaudi malaria resistance QTL 2a (mouse)			Not determined			71589427	90929226	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	52334843	86334843	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	71032003	105032123	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71740461	124622354	Mouse
1301544	Iba3_m	induction of brown adipocytes 3 (mouse)			Not determined		8	44747914	78748059	Mouse

BB146949

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	71,691,774 - 71,691,876	UniSTS	GRCm38
MGSCv37	8	74,215,673 - 74,215,775	UniSTS	GRCm37
Celera	8	74,206,320 - 74,206,422	UniSTS
Cytogenetic Map	8	C1	UniSTS
Whitehead/MRC_RH	8	762.74	UniSTS

B3gnt3

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	71,693,106 - 71,693,391	UniSTS	GRCm38
MGSCv37	8	74,217,005 - 74,217,290	UniSTS	GRCm37
Celera	8	74,207,652 - 74,207,937	UniSTS
Cytogenetic Map	8	C1	UniSTS
cM Map	8		UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_028189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006509752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006509753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC162033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK008674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK144117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK144180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY037785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY039028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC026418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY753510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000034260 ⟹ ENSMUSP00000034260

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	72,143,400 - 72,154,433 (-)	Ensembl
GRCm38.p6 Ensembl	8	71,690,756 - 71,701,789 (-)	Ensembl

RefSeq Acc Id:

NM_028189 ⟹ NP_082465

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	72,144,363 - 72,154,444 (-)	NCBI
GRCm38	8	71,691,719 - 71,701,800 (-)	NCBI
MGSCv37	8	74,215,618 - 74,225,699 (-)	RGD
Celera	8	74,206,265 - 74,216,238 (-)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

TGGAGGGAGGAGCGGGAAAGGGAGAACAGGGAAGAAGCGGAGGAAGGCGAGTAGCCAAGAGCCAGCTCAAGGCGGTCGCCCAGGCTCCGCCCCCACGCCATGCGGCTGCCAAGGCAGAGCCCCTACGA
GATCCTCCTCCTGGTCTTGGTCGCCTTGCTGGTGCTGCTGCTGCTCCTGACCAGCAAGTCACCGCCCAGCTGCTCTGCCCCTGAGAGGTCCAAGGAGCCTGAAGACAACCCCGGGTGGGCCACGGGCC
ACCCACGCACACACCCCGCCCGGTGCCGAGCTAATCTATCCGTGTCCTCGCACCCCGACTTCGCGGGGCTGCCCTTACACGTGCGCGACTTCTTGTTCTACCGCCACTGCCGCGACTTCCCAGTGCTC
CGAGAGCCGCGGGTTACCAAGTGCGCGGAGCCCGTGTTCCTGCTGCTCGCCATCAAGTCCTCGCCTGCAAACTATGGGCGCCGCCAGATGCTGCGCACGACGTGGGCGCGCGAGAGACGGGTGCGTGG
GGCGCCACTGCGCCGCCTCTTCCTTGTGGGCTCAGACCGCGACCCACAACAAGCACGCAAATACAACCGACTGCTGGAGCTGGAAGCGCAGAAATACGGCGACATTCTCCAGTGGGATTTCCATGACT
CCTTCTTTAACCTGACGCTTAAGCAGGTCCTTTTCCTGGAGTGGCAGCTAACCTACTGTACCAACGCCAGCTTCGTGCTCAATGGGGACGACGATGTGTTCGCACACACGGACAACATGGTCACCTAC
CTGCAGGACCACGACCCGGACCAACACCTCTTCGTGGGGCACCTGATCCAGAACGTGGGTCCCATCCGGGTGCCCTGGAGCAAGTACTTCATCCCCGCTCTGGTGATGGCGGAGGACAGATACCCGCC
CTACTGTGGTGGCGGCGGCTTCCTGCTGTCGCGTTTTACCGTGGCCGCCCTACGTCGCGCCGCGCGCGTCCTCCCCATGTTCCCAATCGACGACGTGTTCCTGGGCATGTGTCTGCAGCAGCAGGGTC
TGGCTCCCGGGACGCACAGCGGAGTGCGCACTGCGGGGGTTTTCCCCCCTAGCCCACGTGTGTCATCCTTCGACCCCTGCTTCTACCGCGACCTGCTCCTCGTGCACCGCTTCCTGCCCTTCGAGATG
CTGCTGATGTGGGATGCGCTGAACCAGCCCCAGCTCCTCTGCGGCAGGCAGAGCCCCGCCTACTGAGAGGTTTGGGGGAGTTGACATCCCCTAGCTCATGTCCTGCCTCATCCACGTGCAAAGGGCTG
GCTTCAAGGAGAAGTTCAAAGTGAGGGGCAGAAAGGTGGGTCTGAGGAGTTCATAGGGCAAACTCCTAAGTACGCTTGGAAACCCTCTTGGTACTGTTCACAGCAGGAACTCTGAGTCTAGCCAACTC
TGAGTGGCTCTAAGTGGCCGCTAAGCAAAAACTGCTGTGGACAGAGCCCATGGGTTTTAGGCTCTGGGCCTTGGCCTCTCTCAGGCCCCCAAGGAATTGGGCAGAGGAACAAGGTGGATTTTAAACTG
AGGTGCTCAGAGATCTTGACTTGACCCCCACTAGTGTCTCCCAAGAACTTGGAGAACCACAGGGGCAGGAGGGGTCCTGTGTCCCACAGACCGGGCTGGCAGGAAATAAAGTCCATAGAAGGTTGAAC
GTGATTGTAGGGGGAAGGTTAAGATAAAACTCAGGGCTCTGCCACGTTTTAATTTTATCTATTTAGGAAGGGAGCCAGGTCCTGTCTTCCTCTCTGTTTGGGTCCTGGGACTTGAACTCAAATCTTCA
GGCTTGGCAGCAAGTGCCTCCATTAACTGAGTCATCTCGCCAGTGCCTTTTTAGTTTTCAGCACTACTCATGTTTTAACACCGGCTGCTCTACCCCACCTCTCTTTGACCTTCAATATTAACTCATTG
CAACATGTTCACATCTACAGCATGGCTGTATGTGGCTCCTGCCTCCCCTTGCTCCCTTCCCTGTAGCTACTTTGTGGGTTCTTTTTCTTCCAAAATTGCAACCCCTCCCCAACACCAGACAGGAGAGA
AAAAAGTATAGAGGAAAGAAAAGAGATTACCCAATAAAGTCTCAGCGCTTGGAAA

hide sequence

RefSeq Acc Id:

XM_006509752 ⟹ XP_006509815

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	72,144,017 - 72,154,472 (-)	NCBI
GRCm38	8	71,691,373 - 71,701,828 (-)	NCBI

Sequence:

show sequence

TCCTTGGCTACTAGGAAGCTCGACTCACTGGAGGGAGGAGCGGGAAAGGGAGAACAGGGAAGAA
GCGGAGGAAGGCGAGTAGCCAAGAGCCAGCTCAAGGCGGTCGCCCAGGTAAACAGTGTGGCCTCCGGGGTTGTCTGGAGCCCGCGATCGCAGCTCCGCCCCCACGCCATGCGGCTGCCAAGGCAGAGC
CCCTACGAGATCCTCCTCCTGGTCTTGGTCGCCTTGCTGGTGCTGCTGCTGCTCCTGACCAGCAAGTCACCGCCCAGCTGCTCTGCCCCTGAGAGGTCCAAGGAGCCTGAAGACAACCCCGGGTGGGC
CACGGGCCACCCACGCACACACCCCGCCCGGTGCCGAGCTAATCTATCCGTGTCCTCGCACCCCGACTTCGCGGGGCTGCCCTTACACGTGCGCGACTTCTTGTTCTACCGCCACTGCCGCGACTTCC
CAGTGCTCCGAGAGCCGCGGGTTACCAAGTGCGCGGAGCCCGTGTTCCTGCTGCTCGCCATCAAGTCCTCGCCTGCAAACTATGGGCGCCGCCAGATGCTGCGCACGACGTGGGCGCGCGAGAGACGG
GTGCGTGGGGCGCCACTGCGCCGCCTCTTCCTTGTGGGCTCAGACCGCGACCCACAACAAGCACGCAAATACAACCGACTGCTGGAGCTGGAAGCGCAGAAATACGGCGACATTCTCCAGTGGGATTT
CCATGACTCCTTCTTTAACCTGACGCTTAAGCAGGTCCTTTTCCTGGAGTGGCAGCTAACCTACTGTACCAACGCCAGCTTCGTGCTCAATGGGGACGACGATGTGTTCGCACACACGGACAACATGG
TCACCTACCTGCAGGACCACGACCCGGACCAACACCTCTTCGTGGGGCACCTGATCCAGAACGTGGGTCCCATCCGGGTGCCCTGGAGCAAGTACTTCATCCCCGCTCTGGTGATGGCGGAGGACAGA
TACCCGCCCTACTGTGGTGGCGGCGGCTTCCTGCTGTCGCGTTTTACCGTGGCCGCCCTACGTCGCGCCGCGCGCGTCCTCCCCATGTTCCCAATCGACGACGTGTTCCTGGGCATGTGTCTGCAGCA
GCAGGGTCTGGCTCCCGGGACGCACAGCGGAGTGCGCACTGCGGGGGTTTTCCCCCCTAGCCCACGTGTGTCATCCTTCGACCCCTGCTTCTACCGCGACCTGCTCCTCGTGCACCGCTTCCTGCCCT
TCGAGATGCTGCTGATGTGGGATGCGCTGAACCAGCCCCAGCTCCTCTGCGGCAGGCAGAGCCCCGCCTACTGAGAGGTTTGGGGGAGTTGACATCCCCTAGCTCATGTCCTGCCTCATCCACGTGCA
AAGGGCTGGCTTCAAGGAGAAGTTCAAAGTGAGGGGCAGAAAGGTGGGTCTGAGGAGTTCATAGGGCAAACTCCTAAGTACGCTTGGAAACCCTCTTGGTACTGTTCACAGCAGGAACTCTGAGTCTA
GCCAACTCTGAGTGGCTCTAAGTGGCCGCTAAGCAAAAACTGCTGTGGACAGAGCCCATGGGTTTTAGGCTCTGGGCCTTGGCCTCTCTCAGGCCCCCAAGGAATTGGGCAGAGGAACAAGGTGGATT
TTAAACTGAGGTGCTCAGAGATCTTGACTTGACCCCCACTAGTGTCTCCCAAGAACTTGGAGAACCACAGGGGCAGGAGGGGTCCTGTGTCCCACAGACCGGGCTGGCAGGAAATAAAGTCCATAGAA
GGTTGAACGTGATTGTAGGGGGAAGGTTAAGATAAAACTCAGGGCTCTGCCACGTTTTAATTTTATCTATTTAGGAAGGGAGCCAGGTCCTGTCTTCCTCTCTGTTTGGGTCCTGGGACTTGAACTCA
AATCTTCAGGCTTGGCAGCAAGTGCCTCCATTAACTGAGTCATCTCGCCAGTGCCTTTTTAGTTTTCAGCACTACTCATGTTTTAACACCGGCTGCTCTACCCCACCTCTCTTTGACCTTCAATATTA
ACTCATTGCAACATGTTCACATCTACAGCATGGCTGTATGTGGCTCCTGCCTCCCCTTGCTCCCTTCCCTGTAGCTACTTTGTGGGTTCTTTTTCTTCCAAAATTGCAACCCCTCCCCAACACCAGAC
AGGAGAGAAAAAAGTATAGAGGAAAGAAAAGAGATTACCCAATAAAGTCTCAGCGCTTGGAAAGGTGGTAATGTTACTTTTAGACCTGCTGTTACTGTTAATCCTGCTGATTCCTTGGGGCAAGTTTT
GATCTTCCCTGTCAAAATATCTAGTTTTTTCTTGTCCTTGTTTCTTCTTCGAGGATGACTACTTAGCAAACCTCCACTAACAAGAACAACCCACCCTCTGGGTCCCTAGCATTTATAAACCCTCTAAT
GAGTCCCCAGAATTCCAAACATCACACAATTGCAGAAGCTGCAAAATCGCATCTGCTATAGCACAAAGCAATGCATAGTCAGGTGCTGGGGACTGGCAGAAGCATTCCCACACCCCATACCTGGGATC
AAAATGAGAACACTTTCCTATAAGA

hide sequence

RefSeq Acc Id:

XM_006509753 ⟹ XP_006509816

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	72,144,017 - 72,155,270 (-)	NCBI
GRCm38	8	71,691,373 - 71,702,626 (-)	NCBI

Sequence:

show sequence

TTCCGGTTTAGGAGCTTACTTCTCCCTCCAGCAGGCTACTAGGGCCTGGGACTCAGAGTTAAGA
CCACCAAGTTTTTGAGGCTCCGCCCCCACGCCATGCGGCTGCCAAGGCAGAGCCCCTACGAGATCCTCCTCCTGGTCTTGGTCGCCTTGCTGGTGCTGCTGCTGCTCCTGACCAGCAAGTCACCGCCC
AGCTGCTCTGCCCCTGAGAGGTCCAAGGAGCCTGAAGACAACCCCGGGTGGGCCACGGGCCACCCACGCACACACCCCGCCCGGTGCCGAGCTAATCTATCCGTGTCCTCGCACCCCGACTTCGCGGG
GCTGCCCTTACACGTGCGCGACTTCTTGTTCTACCGCCACTGCCGCGACTTCCCAGTGCTCCGAGAGCCGCGGGTTACCAAGTGCGCGGAGCCCGTGTTCCTGCTGCTCGCCATCAAGTCCTCGCCTG
CAAACTATGGGCGCCGCCAGATGCTGCGCACGACGTGGGCGCGCGAGAGACGGGTGCGTGGGGCGCCACTGCGCCGCCTCTTCCTTGTGGGCTCAGACCGCGACCCACAACAAGCACGCAAATACAAC
CGACTGCTGGAGCTGGAAGCGCAGAAATACGGCGACATTCTCCAGTGGGATTTCCATGACTCCTTCTTTAACCTGACGCTTAAGCAGGTCCTTTTCCTGGAGTGGCAGCTAACCTACTGTACCAACGC
CAGCTTCGTGCTCAATGGGGACGACGATGTGTTCGCACACACGGACAACATGGTCACCTACCTGCAGGACCACGACCCGGACCAACACCTCTTCGTGGGGCACCTGATCCAGAACGTGGGTCCCATCC
GGGTGCCCTGGAGCAAGTACTTCATCCCCGCTCTGGTGATGGCGGAGGACAGATACCCGCCCTACTGTGGTGGCGGCGGCTTCCTGCTGTCGCGTTTTACCGTGGCCGCCCTACGTCGCGCCGCGCGC
GTCCTCCCCATGTTCCCAATCGACGACGTGTTCCTGGGCATGTGTCTGCAGCAGCAGGGTCTGGCTCCCGGGACGCACAGCGGAGTGCGCACTGCGGGGGTTTTCCCCCCTAGCCCACGTGTGTCATC
CTTCGACCCCTGCTTCTACCGCGACCTGCTCCTCGTGCACCGCTTCCTGCCCTTCGAGATGCTGCTGATGTGGGATGCGCTGAACCAGCCCCAGCTCCTCTGCGGCAGGCAGAGCCCCGCCTACTGAG
AGGTTTGGGGGAGTTGACATCCCCTAGCTCATGTCCTGCCTCATCCACGTGCAAAGGGCTGGCTTCAAGGAGAAGTTCAAAGTGAGGGGCAGAAAGGTGGGTCTGAGGAGTTCATAGGGCAAACTCCT
AAGTACGCTTGGAAACCCTCTTGGTACTGTTCACAGCAGGAACTCTGAGTCTAGCCAACTCTGAGTGGCTCTAAGTGGCCGCTAAGCAAAAACTGCTGTGGACAGAGCCCATGGGTTTTAGGCTCTGG
GCCTTGGCCTCTCTCAGGCCCCCAAGGAATTGGGCAGAGGAACAAGGTGGATTTTAAACTGAGGTGCTCAGAGATCTTGACTTGACCCCCACTAGTGTCTCCCAAGAACTTGGAGAACCACAGGGGCA
GGAGGGGTCCTGTGTCCCACAGACCGGGCTGGCAGGAAATAAAGTCCATAGAAGGTTGAACGTGATTGTAGGGGGAAGGTTAAGATAAAACTCAGGGCTCTGCCACGTTTTAATTTTATCTATTTAGG
AAGGGAGCCAGGTCCTGTCTTCCTCTCTGTTTGGGTCCTGGGACTTGAACTCAAATCTTCAGGCTTGGCAGCAAGTGCCTCCATTAACTGAGTCATCTCGCCAGTGCCTTTTTAGTTTTCAGCACTAC
TCATGTTTTAACACCGGCTGCTCTACCCCACCTCTCTTTGACCTTCAATATTAACTCATTGCAACATGTTCACATCTACAGCATGGCTGTATGTGGCTCCTGCCTCCCCTTGCTCCCTTCCCTGTAGC
TACTTTGTGGGTTCTTTTTCTTCCAAAATTGCAACCCCTCCCCAACACCAGACAGGAGAGAAAAAAGTATAGAGGAAAGAAAAGAGATTACCCAATAAAGTCTCAGCGCTTGGAAAGGTGGTAATGTT
ACTTTTAGACCTGCTGTTACTGTTAATCCTGCTGATTCCTTGGGGCAAGTTTTGATCTTCCCTGTCAAAATATCTAGTTTTTTCTTGTCCTTGTTTCTTCTTCGAGGATGACTACTTAGCAAACCTCC
ACTAACAAGAACAACCCACCCTCTGGGTCCCTAGCATTTATAAACCCTCTAATGAGTCCCCAGAATTCCAAACATCACACAATTGCAGAAGCTGCAAAATCGCATCTGCTATAGCACAAAGCAATGCA
TAGTCAGGTGCTGGGGACTGGCAGAAGCATTCCCACACCCCATACCTGGGATCAAAATGAGAACACTTTCCTATAAGA

hide sequence


Protein RefSeqs	NP_082465	(Get FASTA)	NCBI Sequence Viewer
	XP_006509815	(Get FASTA)	NCBI Sequence Viewer
	XP_006509816	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH26418	(Get FASTA)	NCBI Sequence Viewer
	AAK68855	(Get FASTA)	NCBI Sequence Viewer
	AAK72481	(Get FASTA)	NCBI Sequence Viewer
	BAB25824	(Get FASTA)	NCBI Sequence Viewer
	BAE25710	(Get FASTA)	NCBI Sequence Viewer
	BAE25750	(Get FASTA)	NCBI Sequence Viewer
	EDL28958	(Get FASTA)	NCBI Sequence Viewer
	EDL28959	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000034260
	ENSMUSP00000034260.8
GenBank Protein	Q5JCS9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_082465 ⟸ NM_028189

- UniProtKB:

Q8R0U2 (UniProtKB/Swiss-Prot), Q9D7Z2 (UniProtKB/Swiss-Prot), Q5JCS9 (UniProtKB/Swiss-Prot), Q3UNN7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRLPRQSPYEILLLVLVALLVLLLLLTSKSPPSCSAPERSKEPEDNPGWATGHPRTHPARCRANLSVSSHPDFAGLPLHVRDFLFYRHCRDFPVLREPRVTKCAEPVFLLLAIKSSPANYGRRQMLRT
TWARERRVRGAPLRRLFLVGSDRDPQQARKYNRLLELEAQKYGDILQWDFHDSFFNLTLKQVLFLEWQLTYCTNASFVLNGDDDVFAHTDNMVTYLQDHDPDQHLFVGHLIQNVGPIRVPWSKYFIPA
LVMAEDRYPPYCGGGGFLLSRFTVAALRRAARVLPMFPIDDVFLGMCLQQQGLAPGTHSGVRTAGVFPPSPRVSSFDPCFYRDLLLVHRFLPFEMLLMWDALNQPQLLCGRQSPAY

hide sequence

RefSeq Acc Id:	XP_006509816 ⟸ XM_006509753
- Peptide Label:	isoform X1
- UniProtKB:	Q8R0U2 (UniProtKB/Swiss-Prot), Q9D7Z2 (UniProtKB/Swiss-Prot), Q5JCS9 (UniProtKB/Swiss-Prot), Q3UNN7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRLPRQSPYEILLLVLVALLVLLLLLTSKSPPSCSAPERSKEPEDNPGWATGHPRTHPARCRANLSVSSHPDFAGLPLHVRDFLFYRHCRDFPVLREPRVTKCAEPVFLLLAIKSSPANYGRRQMLRT TWARERRVRGAPLRRLFLVGSDRDPQQARKYNRLLELEAQKYGDILQWDFHDSFFNLTLKQVLFLEWQLTYCTNASFVLNGDDDVFAHTDNMVTYLQDHDPDQHLFVGHLIQNVGPIRVPWSKYFIPA LVMAEDRYPPYCGGGGFLLSRFTVAALRRAARVLPMFPIDDVFLGMCLQQQGLAPGTHSGVRTAGVFPPSPRVSSFDPCFYRDLLLVHRFLPFEMLLMWDALNQPQLLCGRQSPAY hide sequence

RefSeq Acc Id:	XP_006509815 ⟸ XM_006509752
- Peptide Label:	isoform X1
- UniProtKB:	Q8R0U2 (UniProtKB/Swiss-Prot), Q9D7Z2 (UniProtKB/Swiss-Prot), Q5JCS9 (UniProtKB/Swiss-Prot), Q3UNN7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRLPRQSPYEILLLVLVALLVLLLLLTSKSPPSCSAPERSKEPEDNPGWATGHPRTHPARCRANLSVSSHPDFAGLPLHVRDFLFYRHCRDFPVLREPRVTKCAEPVFLLLAIKSSPANYGRRQMLRT TWARERRVRGAPLRRLFLVGSDRDPQQARKYNRLLELEAQKYGDILQWDFHDSFFNLTLKQVLFLEWQLTYCTNASFVLNGDDDVFAHTDNMVTYLQDHDPDQHLFVGHLIQNVGPIRVPWSKYFIPA LVMAEDRYPPYCGGGGFLLSRFTVAALRRAARVLPMFPIDDVFLGMCLQQQGLAPGTHSGVRTAGVFPPSPRVSSFDPCFYRDLLLVHRFLPFEMLLMWDALNQPQLLCGRQSPAY hide sequence

Ensembl Acc Id:

ENSMUSP00000034260 ⟸ ENSMUST00000034260

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5JCS9-F1-model_v2	AlphaFold	Q5JCS9	1-372	view protein structure

RGD ID:

8667435

Promoter ID:

EPDNEW_M11748

Type:

initiation region

Name:

B3gnt3_1

Description:

Mus musculus UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase3 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	71,701,802 - 71,701,862	EPDNEW

RGD ID:

6842819

Promoter ID:

MM_KWN:54818

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour

Transcripts:

ENSMUST00000034260

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	74,225,351 - 74,225,851 (-)	MPROMDB

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000031803	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000034260	ENTREZGENE
	ENSMUST00000034260.9	UniProtKB/Swiss-Prot
Gene3D-CATH	3.90.550.50	UniProtKB/Swiss-Prot
InterPro	Glyco_trans_31	UniProtKB/Swiss-Prot
KEGG Report	mmu:72297	UniProtKB/Swiss-Prot
MGD	MGI:2152535	ENTREZGENE
NCBI Gene	72297	ENTREZGENE
PANTHER	N-ACETYLLACTOSAMINIDE BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 3	UniProtKB/Swiss-Prot
	PTHR11214	UniProtKB/Swiss-Prot
Pfam	Galactosyl_T	UniProtKB/Swiss-Prot
PhenoGen	B3gnt3	PhenoGen
UniProt	B3GN3_MOUSE	UniProtKB/Swiss-Prot
	Q3UNJ7_MOUSE	UniProtKB/TrEMBL
	Q3UNN7	ENTREZGENE, UniProtKB/TrEMBL
	Q5JCS9	ENTREZGENE
	Q8R0U2	ENTREZGENE
	Q9D7Z2	ENTREZGENE
UniProt Secondary	Q8R0U2	UniProtKB/Swiss-Prot
	Q9D7Z2	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Annotations - KEGG (archival)

Mammalian Phenotype