B3GNT3 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3) - Rat Genome Database

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Gene: B3GNT3 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3) Canis lupus familiaris
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Symbol: B3GNT3
Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3
RGD ID: 12259608
Description: INVOLVED IN protein glycosylation (inferred); FOUND IN integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,075,146 - 45,093,480 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,076,403 - 45,080,942 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2044,987,325 - 45,005,394 (-)NCBI
ROS_Cfam_1.02045,560,510 - 45,578,792 (-)NCBI
UMICH_Zoey_3.12044,796,918 - 44,815,190 (-)NCBI
UNSW_CanFamBas_1.02045,207,199 - 45,225,252 (-)NCBI
UU_Cfam_GSD_1.02045,483,168 - 45,501,270 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
B3GNT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,075,146 - 45,093,480 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,076,403 - 45,080,942 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2044,987,325 - 45,005,394 (-)NCBI
ROS_Cfam_1.02045,560,510 - 45,578,792 (-)NCBI
UMICH_Zoey_3.12044,796,918 - 44,815,190 (-)NCBI
UNSW_CanFamBas_1.02045,207,199 - 45,225,252 (-)NCBI
UU_Cfam_GSD_1.02045,483,168 - 45,501,270 (-)NCBI
B3GNT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1917,794,828 - 17,813,576 (+)EnsemblGRCh38hg38GRCh38
GRCh381917,794,828 - 17,813,576 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371917,905,947 - 17,924,385 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,766,919 - 17,785,385 (+)NCBINCBI36hg18NCBI36
Build 341917,766,948 - 17,784,890NCBI
Celera1917,807,662 - 17,826,113 (+)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1917,471,377 - 17,489,827 (+)NCBIHuRef
CHM1_11917,905,451 - 17,923,918 (+)NCBICHM1_1
B3gnt3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,144,017 - 72,155,270 (-)NCBIGRCm39mm39
GRCm39 Ensembl872,143,400 - 72,154,433 (-)Ensembl
GRCm38871,691,373 - 71,702,626 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,690,756 - 71,701,789 (-)EnsemblGRCm38mm10GRCm38
MGSCv37874,215,618 - 74,225,699 (-)NCBIGRCm37mm9NCBIm37
MGSCv36874,620,708 - 74,630,781 (-)NCBImm8
Celera874,206,265 - 74,216,238 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
B3gnt3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21618,401,405 - 18,410,821 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1618,401,405 - 18,410,766 (-)Ensembl
Rnor_6.01620,123,948 - 20,133,482 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,123,948 - 20,133,322 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,984,402 - 19,994,118 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,892,320 - 18,901,908 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11618,893,248 - 18,894,532 (-)NCBI
Celera1618,604,001 - 18,613,336 (-)NCBICelera
Cytogenetic Map16p14NCBI
B3gnt3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555243,433,571 - 3,436,941 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555243,432,797 - 3,436,941 (-)NCBIChiLan1.0ChiLan1.0
B3GNT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11918,252,347 - 18,270,388 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,252,347 - 18,270,161 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01917,277,686 - 17,295,646 (+)NCBIMhudiblu_PPA_v0panPan3
B3GNT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,934,958 - 59,952,859 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1259,934,948 - 59,952,861 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,504,383 - 59,522,285 (-)NCBISscrofa10.2Sscrofa10.2susScr3
B3GNT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1616,267,996 - 16,286,819 (+)NCBI
ChlSab1.1 Ensembl616,281,579 - 16,285,892 (+)Ensembl
Vero_WHO_p1.0NW_0236660743,102,798 - 3,121,482 (-)NCBI
B3gnt3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249081,340,829 - 1,356,435 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3
Low 2
Below cutoff 5 22 6 6 6 6 5 12 8 10 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000024121   ⟹   ENSCAFP00000022393
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2045,076,403 - 45,080,942 (-)Ensembl
RefSeq Acc Id: XM_038428210   ⟹   XP_038284138
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02045,560,510 - 45,578,792 (-)NCBI
RefSeq Acc Id: XM_038503863   ⟹   XP_038359791
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12044,796,918 - 44,815,190 (-)NCBI
RefSeq Acc Id: XM_038566880   ⟹   XP_038422808
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02045,483,168 - 45,501,270 (-)NCBI
RefSeq Acc Id: XM_038631034   ⟹   XP_038486962
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02045,207,199 - 45,225,252 (-)NCBI
RefSeq Acc Id: XM_541947   ⟹   XP_541947
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12045,075,146 - 45,093,480 (-)NCBI
Dog10K_Boxer_Tasha2044,987,325 - 45,005,394 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038284138 (Get FASTA)   NCBI Sequence Viewer  
  XP_038359791 (Get FASTA)   NCBI Sequence Viewer  
  XP_038422808 (Get FASTA)   NCBI Sequence Viewer  
  XP_038486962 (Get FASTA)   NCBI Sequence Viewer  
  XP_541947 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_541947   ⟸   XM_541947
- UniProtKB: E2RG07 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000022393   ⟸   ENSCAFT00000024121
RefSeq Acc Id: XP_038359791   ⟸   XM_038503863
RefSeq Acc Id: XP_038486962   ⟸   XM_038631034
RefSeq Acc Id: XP_038284138   ⟸   XM_038428210
RefSeq Acc Id: XP_038422808   ⟸   XM_038566880


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000015192 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000022393 ENTREZGENE
NCBI Gene B3GNT3 ENTREZGENE
UniProt E2RG07 ENTREZGENE
VGNC ID VGNC:38342 ENTREZGENE