Srp9 (signal recognition particle 9) - Rat Genome Database

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Gene: Srp9 (signal recognition particle 9) Chinchilla lanigera
Analyze
Symbol: Srp9
Name: signal recognition particle 9
RGD ID: 8963159
Description: PARTICIPATES IN interleukin-3 signaling pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: signal recognition particle 9kDa
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955520159,331 - 168,507 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955520163,713 - 168,507 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Srp9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955520159,331 - 168,507 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955520163,713 - 168,507 (-)NCBIChiLan1.0ChiLan1.0
SRP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381225,777,826 - 225,790,464 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1225,777,813 - 225,790,468 (+)EnsemblGRCh38hg38GRCh38
GRCh371225,965,528 - 225,978,166 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,032,154 - 224,044,787 (+)NCBINCBI36Build 36hg18NCBI36
Build 341222,272,273 - 222,284,896NCBI
Celera1199,156,523 - 199,169,222 (+)NCBICelera
Cytogenetic Map1q42.12NCBI
HuRef1196,483,476 - 196,496,108 (+)NCBIHuRef
CHM1_11227,237,869 - 227,250,522 (+)NCBICHM1_1
T2T-CHM13v2.01224,965,843 - 224,978,462 (+)NCBIT2T-CHM13v2.0
Srp9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391181,952,302 - 181,959,980 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1181,952,302 - 181,959,972 (+)EnsemblGRCm39 Ensembl
GRCm381182,124,737 - 182,132,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1182,124,737 - 182,132,407 (+)EnsemblGRCm38mm10GRCm38
MGSCv371184,054,868 - 184,062,546 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,961,425 - 183,969,063 (+)NCBIMGSCv36mm8
Celera1189,181,350 - 189,188,997 (+)NCBICelera
Cytogenetic Map1H5NCBI
cM Map184.93NCBI
Srp9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81396,364,253 - 96,372,393 (+)NCBIGRCr8
mRatBN7.21393,832,580 - 93,840,720 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1393,832,580 - 93,840,720 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1396,337,864 - 96,346,004 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01397,737,747 - 97,745,887 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01394,919,927 - 94,928,067 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013100,551,307 - 100,559,447 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13100,551,307 - 100,559,447 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013105,486,289 - 105,494,429 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41398,125,510 - 98,133,650 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1393,365,993 - 93,374,180 (+)NCBICelera
Cytogenetic Map13q26NCBI
SRP9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2123,747,333 - 23,760,035 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1123,695,708 - 23,708,401 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01201,238,977 - 201,251,606 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11206,240,484 - 206,252,854 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1206,240,484 - 206,252,854 (+)Ensemblpanpan1.1panPan2
SRP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1739,012,142 - 39,023,009 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl739,013,806 - 39,022,991 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha738,494,353 - 38,505,218 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0738,846,134 - 38,857,000 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1738,685,853 - 38,696,724 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0738,694,000 - 38,704,877 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0738,963,819 - 38,974,690 (-)NCBIUU_Cfam_GSD_1.0
Srp9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934452,152,196 - 52,163,296 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365262,583,836 - 2,595,777 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365262,583,986 - 2,595,105 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRP9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1013,672,355 - 13,723,800 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11013,711,538 - 13,723,806 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21016,065,547 - 16,077,814 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SRP9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_0236660553,979,556 - 3,993,001 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srp9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248356,206,298 - 6,212,807 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248356,205,686 - 6,211,962 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000001889   ⟹   ENSCLAP00000001846
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955520159,331 - 168,507 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000001890   ⟹   ENSCLAP00000001847
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955520164,050 - 168,426 (-)Ensembl
RefSeq Acc Id: XM_005409214   ⟹   XP_005409271
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955520163,713 - 168,507 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005409271 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001846
  ENSCLAP00000001846.1
  ENSCLAP00000001847.1
RefSeq Acc Id: XP_005409271   ⟸   XM_005409214
- UniProtKB: A0A8C2YIU7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000001846   ⟸   ENSCLAT00000001889
Ensembl Acc Id: ENSCLAP00000001847   ⟸   ENSCLAT00000001890
Protein Domains
SRP9


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001368 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001889 ENTREZGENE
  ENSCLAT00000001889.1 UniProtKB/TrEMBL
  ENSCLAT00000001890.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.720.10 UniProtKB/TrEMBL
InterPro Signal_recog_particle_SRP9 UniProtKB/TrEMBL
  Signal_recog_particle_SRP9/14 UniProtKB/TrEMBL
  SRP9 UniProtKB/TrEMBL
  SRP9_dom UniProtKB/TrEMBL
NCBI Gene Srp9 ENTREZGENE
PANTHER PTHR12834 UniProtKB/TrEMBL
  SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN UniProtKB/TrEMBL
Pfam SRP9-21 UniProtKB/TrEMBL
PIRSF Signal_recog_particle_SRP9 UniProtKB/TrEMBL
Superfamily-SCOP SSF54762 UniProtKB/TrEMBL
UniProt A0A8C2UL62_CHILA UniProtKB/TrEMBL
  A0A8C2YIU7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Srp9  signal recognition particle 9    signal recognition particle 9kDa  Symbol and/or name change 5135510 APPROVED