Srp9 (signal recognition particle 9) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Srp9 (signal recognition particle 9) Heterocephalus glaber
Analyze
Symbol: Srp9
Name: signal recognition particle 9
RGD ID: 18900339
Description: ENCODES a protein that exhibits 7S RNA binding (inferred); RNA binding (inferred); INVOLVED IN negative regulation of translational elongation (inferred); SRP-dependent cotranslational protein targeting to membrane (inferred); PARTICIPATES IN interleukin-3 signaling pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasm (inferred); signal recognition particle (inferred); signal recognition particle, endoplasmic reticulum targeting (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: signal recognition particle 9 kDa protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248356,206,298 - 6,212,807 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248356,205,686 - 6,211,962 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Srp9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248356,206,298 - 6,212,807 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248356,205,686 - 6,211,962 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SRP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381225,777,826 - 225,790,464 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1225,777,813 - 225,790,468 (+)EnsemblGRCh38hg38GRCh38
GRCh371225,965,528 - 225,978,166 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,032,154 - 224,044,787 (+)NCBINCBI36Build 36hg18NCBI36
Build 341222,272,273 - 222,284,896NCBI
Celera1199,156,523 - 199,169,222 (+)NCBICelera
Cytogenetic Map1q42.12NCBI
HuRef1196,483,476 - 196,496,108 (+)NCBIHuRef
CHM1_11227,237,869 - 227,250,522 (+)NCBICHM1_1
T2T-CHM13v2.01224,965,843 - 224,978,462 (+)NCBIT2T-CHM13v2.0
Srp9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391181,952,302 - 181,959,980 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1181,952,302 - 181,959,972 (+)EnsemblGRCm39 Ensembl
GRCm381182,124,737 - 182,132,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1182,124,737 - 182,132,407 (+)EnsemblGRCm38mm10GRCm38
MGSCv371184,054,868 - 184,062,546 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,961,425 - 183,969,063 (+)NCBIMGSCv36mm8
Celera1189,181,350 - 189,188,997 (+)NCBICelera
Cytogenetic Map1H5NCBI
cM Map184.93NCBI
Srp9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81396,364,253 - 96,372,393 (+)NCBIGRCr8
mRatBN7.21393,832,580 - 93,840,720 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1393,832,580 - 93,840,720 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1396,337,864 - 96,346,004 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01397,737,747 - 97,745,887 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01394,919,927 - 94,928,067 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013100,551,307 - 100,559,447 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13100,551,307 - 100,559,447 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013105,486,289 - 105,494,429 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41398,125,510 - 98,133,650 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1393,365,993 - 93,374,180 (+)NCBICelera
Cytogenetic Map13q26NCBI
Srp9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955520159,331 - 168,507 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955520163,713 - 168,507 (-)NCBIChiLan1.0ChiLan1.0
SRP9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2123,747,333 - 23,760,035 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1123,695,708 - 23,708,401 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01201,238,977 - 201,251,606 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11206,240,484 - 206,252,854 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1206,240,484 - 206,252,854 (+)Ensemblpanpan1.1panPan2
SRP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1739,012,142 - 39,023,009 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl739,013,806 - 39,022,991 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha738,494,353 - 38,505,218 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0738,846,134 - 38,857,000 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1738,685,853 - 38,696,724 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0738,694,000 - 38,704,877 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0738,963,819 - 38,974,690 (-)NCBIUU_Cfam_GSD_1.0
Srp9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934452,152,196 - 52,163,296 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365262,583,836 - 2,595,777 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365262,583,986 - 2,595,105 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRP9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1013,672,355 - 13,723,800 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11013,711,538 - 13,723,806 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21016,065,547 - 16,077,814 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SRP9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_0236660553,979,556 - 3,993,001 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000003173   ⟹   ENSHGLP00000003118
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248356,206,298 - 6,212,807 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000003174   ⟹   ENSHGLP00000003119
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248356,206,740 - 6,211,819 (-)Ensembl
RefSeq Acc Id: XM_004867454   ⟹   XP_004867511
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248356,205,686 - 6,211,962 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004867511 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000003118
GenBank Protein JAN97356 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004867511   ⟸   XM_004867454
- UniProtKB: A0A0P6J4F2 (UniProtKB/TrEMBL),   G5BU64 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000003119   ⟸   ENSHGLT00000003174
Ensembl Acc Id: ENSHGLP00000003118   ⟸   ENSHGLT00000003173


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002329 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000003173 ENTREZGENE
Gene3D-CATH 3.30.720.10 UniProtKB/TrEMBL
InterPro Signal_recog_particle_SRP9 UniProtKB/TrEMBL
  Signal_recog_particle_SRP9/14 UniProtKB/TrEMBL
  SRP9 UniProtKB/TrEMBL
  SRP9_dom UniProtKB/TrEMBL
KEGG Report hgl:101697464 UniProtKB/TrEMBL
NCBI Gene Srp9 ENTREZGENE
PANTHER PTHR12834 UniProtKB/TrEMBL
  SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN UniProtKB/TrEMBL
Pfam SRP9-21 UniProtKB/TrEMBL
PIRSF Signal_recog_particle_SRP9 UniProtKB/TrEMBL
Superfamily-SCOP SSF54762 UniProtKB/TrEMBL
UniProt A0A0P6J4F2 ENTREZGENE, UniProtKB/TrEMBL
  G5BU64 ENTREZGENE, UniProtKB/TrEMBL