SRP9 (signal recognition particle 9) - Rat Genome Database

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Gene: SRP9 (signal recognition particle 9) Canis lupus familiaris
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Symbol: SRP9
Name: signal recognition particle 9
RGD ID: 12382715
Description: ENCODES a protein that exhibits 7S RNA binding (inferred); INVOLVED IN negative regulation of translational elongation (inferred); SRP-dependent cotranslational protein targeting to membrane (inferred); PARTICIPATES IN interleukin-3 signaling pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytosol (inferred); signal recognition particle, endoplasmic reticulum targeting (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: Signal recognition particle 9 kDa protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1739,012,142 - 39,023,009 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl739,013,806 - 39,022,991 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha738,494,353 - 38,505,218 (-)NCBI
ROS_Cfam_1.0738,846,134 - 38,857,000 (-)NCBI
UMICH_Zoey_3.1738,685,853 - 38,696,724 (-)NCBI
UNSW_CanFamBas_1.0738,694,000 - 38,704,877 (-)NCBI
UU_Cfam_GSD_1.0738,963,819 - 38,974,690 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
SRP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1739,012,142 - 39,023,009 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl739,013,806 - 39,022,991 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha738,494,353 - 38,505,218 (-)NCBI
ROS_Cfam_1.0738,846,134 - 38,857,000 (-)NCBI
UMICH_Zoey_3.1738,685,853 - 38,696,724 (-)NCBI
UNSW_CanFamBas_1.0738,694,000 - 38,704,877 (-)NCBI
UU_Cfam_GSD_1.0738,963,819 - 38,974,690 (-)NCBI
SRP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1225,777,813 - 225,790,468 (+)EnsemblGRCh38hg38GRCh38
GRCh381225,777,826 - 225,790,464 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371225,965,528 - 225,978,166 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,032,154 - 224,044,787 (+)NCBINCBI36hg18NCBI36
Build 341222,272,273 - 222,284,896NCBI
Celera1199,156,523 - 199,169,222 (+)NCBI
Cytogenetic Map1q42.12NCBI
HuRef1196,483,476 - 196,496,108 (+)NCBIHuRef
CHM1_11227,237,869 - 227,250,522 (+)NCBICHM1_1
Srp9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391181,952,302 - 181,959,980 (+)NCBIGRCm39mm39
GRCm39 Ensembl1181,952,302 - 181,959,972 (+)Ensembl
GRCm381182,124,737 - 182,132,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1182,124,737 - 182,132,407 (+)EnsemblGRCm38mm10GRCm38
MGSCv371184,054,868 - 184,062,546 (+)NCBIGRCm37mm9NCBIm37
MGSCv361183,961,425 - 183,969,063 (+)NCBImm8
Celera1189,181,350 - 189,188,997 (+)NCBICelera
Cytogenetic Map1H5NCBI
Srp9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21393,832,580 - 93,840,720 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1393,832,580 - 93,840,720 (+)Ensembl
Rnor_6.013100,551,307 - 100,559,447 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13100,551,307 - 100,559,447 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013105,486,289 - 105,494,429 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41398,125,510 - 98,133,650 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1393,365,993 - 93,374,180 (+)NCBICelera
Cytogenetic Map13q26NCBI
Srp9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955520163,713 - 168,507 (-)NCBIChiLan1.0ChiLan1.0
SRP9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11206,240,484 - 206,252,854 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1206,240,484 - 206,252,854 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01201,238,977 - 201,251,606 (+)NCBIMhudiblu_PPA_v0panPan3
Srp9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934452,152,196 - 52,163,296 (-)NCBI
SpeTri2.0NW_0049365262,583,986 - 2,595,105 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRP9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1013,672,355 - 13,723,804 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11013,711,538 - 13,723,806 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21016,065,547 - 16,077,814 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SRP9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_0236660553,979,556 - 3,993,001 (-)NCBIVero_WHO_p1.0
Srp9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248356,205,686 - 6,211,962 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000025651   ⟹   ENSCAFP00000023824
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl739,013,806 - 39,022,991 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000081832   ⟹   ENSCAFP00000057860
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl739,014,523 - 39,022,991 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000091572   ⟹   ENSCAFP00000056760
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl739,015,156 - 39,022,991 (-)Ensembl
RefSeq Acc Id: XM_038481475   ⟹   XP_038337403
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1738,685,853 - 38,696,724 (-)NCBI
RefSeq Acc Id: XM_038542829   ⟹   XP_038398757
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0738,963,819 - 38,974,690 (-)NCBI
RefSeq Acc Id: XM_038606970   ⟹   XP_038462898
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0738,694,000 - 38,704,877 (-)NCBI
RefSeq Acc Id: XM_038671671   ⟹   XP_038527599
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0738,846,134 - 38,857,000 (-)NCBI
RefSeq Acc Id: XM_849646   ⟹   XP_854739
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1739,012,142 - 39,023,009 (-)NCBI
Dog10K_Boxer_Tasha738,494,353 - 38,505,218 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038337403 (Get FASTA)   NCBI Sequence Viewer  
  XP_038398757 (Get FASTA)   NCBI Sequence Viewer  
  XP_038462898 (Get FASTA)   NCBI Sequence Viewer  
  XP_038527599 (Get FASTA)   NCBI Sequence Viewer  
  XP_854739 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein P21262 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_854739   ⟸   XM_849646
- UniProtKB: F1Q0Z5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000023824   ⟸   ENSCAFT00000025651
RefSeq Acc Id: ENSCAFP00000056760   ⟸   ENSCAFT00000091572
RefSeq Acc Id: ENSCAFP00000057860   ⟸   ENSCAFT00000081832
RefSeq Acc Id: XP_038337403   ⟸   XM_038481475
RefSeq Acc Id: XP_038462898   ⟸   XM_038606970
RefSeq Acc Id: XP_038527599   ⟸   XM_038671671
RefSeq Acc Id: XP_038398757   ⟸   XM_038542829

Promoters
RGD ID:13683985
Promoter ID:EPDNEW_C2051
Type:initiation region
Name:SRP9_1
Description:signal recognition particle 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1739,022,961 - 39,023,021EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016162 Ensembl
NCBI Gene SRP9 ENTREZGENE
UniProt F1Q0Z5 ENTREZGENE
  P21262 ENTREZGENE
VGNC ID VGNC:46810 ENTREZGENE