SRP9 (signal recognition particle 9) - Rat Genome Database

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Gene: SRP9 (signal recognition particle 9) Canis lupus familiaris
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Symbol: SRP9
Name: signal recognition particle 9
RGD ID: 12382715
Description: ENCODES a protein that exhibits 7S RNA binding (inferred); RNA binding (inferred); INVOLVED IN negative regulation of translational elongation (inferred); SRP-dependent cotranslational protein targeting to membrane (inferred); PARTICIPATES IN interleukin-3 signaling pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); signal recognition particle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Signal recognition particle 9 kDa protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1739,012,142 - 39,023,009 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl739,013,806 - 39,022,991 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha738,494,353 - 38,505,218 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0738,846,134 - 38,857,000 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1738,685,853 - 38,696,724 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0738,694,000 - 38,704,877 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0738,963,819 - 38,974,690 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SRP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1739,012,142 - 39,023,009 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl739,013,806 - 39,022,991 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha738,494,353 - 38,505,218 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0738,846,134 - 38,857,000 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1738,685,853 - 38,696,724 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0738,694,000 - 38,704,877 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0738,963,819 - 38,974,690 (-)NCBIUU_Cfam_GSD_1.0
SRP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381225,777,826 - 225,790,464 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1225,777,813 - 225,790,468 (+)EnsemblGRCh38hg38GRCh38
GRCh371225,965,528 - 225,978,166 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,032,154 - 224,044,787 (+)NCBINCBI36Build 36hg18NCBI36
Build 341222,272,273 - 222,284,896NCBI
Celera1199,156,523 - 199,169,222 (+)NCBICelera
Cytogenetic Map1q42.12NCBI
HuRef1196,483,476 - 196,496,108 (+)NCBIHuRef
CHM1_11227,237,869 - 227,250,522 (+)NCBICHM1_1
T2T-CHM13v2.01224,965,843 - 224,978,462 (+)NCBIT2T-CHM13v2.0
Srp9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391181,952,302 - 181,959,980 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1181,952,302 - 181,959,972 (+)EnsemblGRCm39 Ensembl
GRCm381182,124,737 - 182,132,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1182,124,737 - 182,132,407 (+)EnsemblGRCm38mm10GRCm38
MGSCv371184,054,868 - 184,062,546 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,961,425 - 183,969,063 (+)NCBIMGSCv36mm8
Celera1189,181,350 - 189,188,997 (+)NCBICelera
Cytogenetic Map1H5NCBI
cM Map184.93NCBI
Srp9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81396,364,253 - 96,372,393 (+)NCBIGRCr8
mRatBN7.21393,832,580 - 93,840,720 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1393,832,580 - 93,840,720 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1396,337,864 - 96,346,004 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01397,737,747 - 97,745,887 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01394,919,927 - 94,928,067 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013100,551,307 - 100,559,447 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13100,551,307 - 100,559,447 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013105,486,289 - 105,494,429 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41398,125,510 - 98,133,650 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1393,365,993 - 93,374,180 (+)NCBICelera
Cytogenetic Map13q26NCBI
Srp9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955520159,331 - 168,507 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955520163,713 - 168,507 (-)NCBIChiLan1.0ChiLan1.0
SRP9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2123,747,333 - 23,760,035 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1123,695,708 - 23,708,401 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01201,238,977 - 201,251,606 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11206,240,484 - 206,252,854 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1206,240,484 - 206,252,854 (+)Ensemblpanpan1.1panPan2
Srp9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934452,152,196 - 52,163,296 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365262,583,836 - 2,595,777 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365262,583,986 - 2,595,105 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRP9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1013,672,355 - 13,723,800 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11013,711,538 - 13,723,806 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21016,065,547 - 16,077,814 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SRP9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_0236660553,979,556 - 3,993,001 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srp9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248356,206,298 - 6,212,807 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248356,205,686 - 6,211,962 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SRP9
143 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000025651   ⟹   ENSCAFP00000023824
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl739,013,806 - 39,022,991 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000081832   ⟹   ENSCAFP00000057860
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl739,014,523 - 39,022,991 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000091572   ⟹   ENSCAFP00000056760
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl739,015,156 - 39,022,991 (-)Ensembl
RefSeq Acc Id: XM_038481475   ⟹   XP_038337403
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1738,685,853 - 38,696,724 (-)NCBI
RefSeq Acc Id: XM_038542829   ⟹   XP_038398757
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0738,963,819 - 38,974,690 (-)NCBI
RefSeq Acc Id: XM_038606970   ⟹   XP_038462898
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0738,694,000 - 38,704,877 (-)NCBI
RefSeq Acc Id: XM_038671671   ⟹   XP_038527599
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0738,846,134 - 38,857,000 (-)NCBI
RefSeq Acc Id: XM_849646   ⟹   XP_854739
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1739,012,142 - 39,023,009 (-)NCBI
Dog10K_Boxer_Tasha738,494,353 - 38,505,218 (-)NCBI
Sequence:
RefSeq Acc Id: XP_854739   ⟸   XM_849646
- UniProtKB: P21262 (UniProtKB/Swiss-Prot),   A0A8C0QUL2 (UniProtKB/TrEMBL),   A0A8C0SEN2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000023824   ⟸   ENSCAFT00000025651
Ensembl Acc Id: ENSCAFP00000056760   ⟸   ENSCAFT00000091572
Ensembl Acc Id: ENSCAFP00000057860   ⟸   ENSCAFT00000081832
RefSeq Acc Id: XP_038337403   ⟸   XM_038481475
RefSeq Acc Id: XP_038462898   ⟸   XM_038606970
RefSeq Acc Id: XP_038527599   ⟸   XM_038671671
- UniProtKB: P21262 (UniProtKB/Swiss-Prot),   A0A8C0QUL2 (UniProtKB/TrEMBL),   A0A8C0SEN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038398757   ⟸   XM_038542829
- UniProtKB: P21262 (UniProtKB/Swiss-Prot),   A0A8C0QUL2 (UniProtKB/TrEMBL),   A0A8C0SEN2 (UniProtKB/TrEMBL)
Protein Domains
SRP9

Promoters
RGD ID:13683985
Promoter ID:EPDNEW_C2051
Type:initiation region
Name:SRP9_1
Description:signal recognition particle 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1739,022,961 - 39,023,021EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016162 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030004212 UniProtKB/TrEMBL
  ENSCAFG00040012503 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000081832.2 UniProtKB/TrEMBL
  ENSCAFT00000091572.2 UniProtKB/TrEMBL
  ENSCAFT00030007778.1 UniProtKB/TrEMBL
  ENSCAFT00030007814.1 UniProtKB/TrEMBL
  ENSCAFT00030007854.1 UniProtKB/TrEMBL
  ENSCAFT00030007886.1 UniProtKB/TrEMBL
  ENSCAFT00040023072.1 UniProtKB/TrEMBL
  ENSCAFT00040023086.1 UniProtKB/TrEMBL
  ENSCAFT00040023121.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.720.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Signal_recog_particle_SRP9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Signal_recog_particle_SRP9/14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SRP9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SRP9_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report cfa:611923 UniProtKB/TrEMBL
NCBI Gene SRP9 ENTREZGENE
PANTHER PTHR12834 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SRP9-21 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PIRSF Signal_recog_particle_SRP9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54762 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8C0MC22_CANLF UniProtKB/TrEMBL
  A0A8C0QUL2 ENTREZGENE
  A0A8C0RCE5_CANLF UniProtKB/TrEMBL
  A0A8C0SEN2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SEP8_CANLF UniProtKB/TrEMBL
  P21262 ENTREZGENE, UniProtKB/Swiss-Prot
VGNC ID VGNC:46810 ENTREZGENE