Mgarp (mitochondria localized glutamic acid rich protein) - Rat Genome Database

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Gene: Mgarp (mitochondria localized glutamic acid rich protein) Chinchilla lanigera
Analyze
Symbol: Mgarp
Name: mitochondria localized glutamic acid rich protein
RGD ID: 8950962
Description: INVOLVED IN anterograde axonal transport (ortholog); axon development (ortholog); axonal transport of mitochondrion (ortholog); ASSOCIATED WITH rheumatoid arthritis (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554284,365,585 - 4,373,902 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Mgarp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554284,365,585 - 4,373,902 (+)NCBIChiLan1.0ChiLan1.0
MGARP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384139,266,165 - 139,280,225 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4139,266,165 - 139,280,225 (-)EnsemblGRCh38hg38GRCh38
GRCh374140,187,319 - 140,201,379 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364140,406,767 - 140,420,942 (-)NCBINCBI36Build 36hg18NCBI36
Celera4137,519,484 - 137,533,661 (-)NCBICelera
Cytogenetic Map4q31.1NCBI
HuRef4135,916,569 - 135,930,745 (-)NCBIHuRef
CHM1_14140,164,545 - 140,178,718 (-)NCBICHM1_1
T2T-CHM13v2.04142,585,757 - 142,599,821 (-)NCBIT2T-CHM13v2.0
Mgarp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39351,295,833 - 51,303,968 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl351,295,833 - 51,304,159 (-)EnsemblGRCm39 Ensembl
GRCm38351,388,412 - 51,396,547 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl351,388,412 - 51,396,738 (-)EnsemblGRCm38mm10GRCm38
MGSCv37351,192,334 - 51,200,469 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36351,476,345 - 51,484,438 (-)NCBIMGSCv36mm8
Celera351,115,514 - 51,123,647 (-)NCBICelera
Cytogenetic Map3CNCBI
cM Map322.46NCBI
Mgarp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82137,582,152 - 137,590,294 (-)NCBIGRCr8
mRatBN7.22135,431,283 - 135,439,425 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2135,431,283 - 135,439,612 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2142,007,174 - 142,015,314 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02140,119,441 - 140,127,578 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02134,750,919 - 134,759,004 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02140,444,963 - 140,453,719 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2140,444,965 - 140,453,107 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02159,919,901 - 159,928,731 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42140,282,230 - 140,290,372 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2129,926,886 - 129,935,028 (-)NCBICelera
Cytogenetic Map2q26NCBI
MGARP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23137,139,002 - 137,154,331 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14137,531,282 - 137,547,681 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04131,629,272 - 131,643,996 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14142,938,778 - 142,952,601 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4142,936,873 - 142,952,601 (-)Ensemblpanpan1.1panPan2
MGARP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1193,411,718 - 3,423,589 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl193,411,778 - 3,423,330 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha193,661,598 - 3,673,270 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0193,484,392 - 3,496,305 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl193,484,424 - 3,496,046 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1193,415,580 - 3,427,379 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0193,777,160 - 3,789,020 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0194,140,923 - 4,152,718 (+)NCBIUU_Cfam_GSD_1.0
Mgarp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530150,884,101 - 50,899,985 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365358,320,874 - 8,336,752 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365358,321,443 - 8,336,773 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MGARP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl887,697,544 - 87,723,125 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1887,708,887 - 87,723,126 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2893,384,982 - 93,399,191 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MGARP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1786,233,666 - 86,246,218 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl786,233,448 - 86,245,975 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603765,754,415 - 65,767,076 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mgarp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477719,569,376 - 19,582,226 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005386693   ⟹   XP_005386750
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554284,365,585 - 4,373,902 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005386750 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005386750   ⟸   XM_005386693
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Mgarp ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Mgarp  mitochondria localized glutamic acid rich protein    mitochondria-localized glutamic acid-rich protein  Symbol and/or name change 5135510 APPROVED