Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | rheumatoid arthritis | | ISO | MGARP (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:17568789 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | rheumatoid arthritis | | ISO | MGARP (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:17568789 | |
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# | Reference Title | Reference Citation |
1. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
2. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:10349636 | PMID:10919256 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:12466851 | PMID:12477932 | PMID:14610273 | PMID:15226823 | PMID:16141072 | PMID:16141073 | PMID:16565373 |
PMID:16602821 | PMID:17062627 | PMID:19325000 | PMID:19528298 | PMID:20107910 | PMID:21267068 | PMID:21447634 | PMID:21873635 | PMID:23900018 | PMID:24323429 | PMID:27997827 | PMID:31202457 |
PMID:31202927 | PMID:36602389 |
Mgarp (Mus musculus - house mouse) |
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MGARP (Homo sapiens - human) |
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Mgarp (Rattus norvegicus - Norway rat) |
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Mgarp (Chinchilla lanigera - long-tailed chinchilla) |
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MGARP (Pan paniscus - bonobo/pygmy chimpanzee) |
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MGARP (Canis lupus familiaris - dog) |
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Mgarp (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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MGARP (Sus scrofa - pig) |
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MGARP (Chlorocebus sabaeus - green monkey) |
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Mgarp (Heterocephalus glaber - naked mole-rat) |
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Variants in Mgarp
282 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH135939 |
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RefSeq Transcripts | NM_026358 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NR_028121 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC105966 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AF228502 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK006339 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK016342 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK151401 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC012511 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC022740 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC049556 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BY328038 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466530 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000038154 ⟹ ENSMUSP00000040703 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000108046 ⟹ ENSMUSP00000103681 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000141156 ⟹ ENSMUSP00000123126 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000145938 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000157054 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_026358 ⟹ NP_080634 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_028121 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_080634 | (Get FASTA) | NCBI Sequence Viewer |
GenBank Protein | AAH12511 | (Get FASTA) | NCBI Sequence Viewer |
AAH22740 | (Get FASTA) | NCBI Sequence Viewer | |
AAH49556 | (Get FASTA) | NCBI Sequence Viewer | |
AAL55654 | (Get FASTA) | NCBI Sequence Viewer | |
BAB24535 | (Get FASTA) | NCBI Sequence Viewer | |
BAE30369 | (Get FASTA) | NCBI Sequence Viewer | |
EDL35203 | (Get FASTA) | NCBI Sequence Viewer | |
EDL35204 | (Get FASTA) | NCBI Sequence Viewer | |
EDL35205 | (Get FASTA) | NCBI Sequence Viewer | |
EDL35206 | (Get FASTA) | NCBI Sequence Viewer | |
EDL35207 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000040703 | ||
ENSMUSP00000040703.6 | |||
ENSMUSP00000103681.2 | |||
ENSMUSP00000123126.3 | |||
GenBank Protein | Q8VI64 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_080634 ⟸ NM_026358 |
- UniProtKB: | Q96EB2 (UniProtKB/Swiss-Prot), Q9D9Y5 (UniProtKB/Swiss-Prot), Q8VI64 (UniProtKB/Swiss-Prot), D3Z134 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSMUSP00000103681 ⟸ ENSMUST00000108046 |
RefSeq Acc Id: | ENSMUSP00000040703 ⟸ ENSMUST00000038154 |
RefSeq Acc Id: | ENSMUSP00000123126 ⟸ ENSMUST00000141156 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q8VI64-F1-model_v2 | AlphaFold | Q8VI64 | 1-283 | view protein structure |
RGD ID: | 6833279 | ||||||||
Promoter ID: | MM_KWN:34268 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | BoneMarrow_0Hour, BoneMarrow_4Hour, ES_Cell | ||||||||
Transcripts: | NR_028121_4930583H14RIK, OTTMUST00000052353, OTTMUST00000052355, OTTMUST00000052356, OTTMUST00000052357 | ||||||||
Position: |
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RGD ID: | 6880638 | ||||||||
Promoter ID: | EPDNEW_M3755 | ||||||||
Type: | initiation region | ||||||||
Name: | Mgarp_1 | ||||||||
Description: | Mus musculus mitochondria localized glutamic acid rich protein, transcript variant 1, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1914999 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000037161 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000038154 | ENTREZGENE |
ENSMUST00000038154.12 | UniProtKB/Swiss-Prot | |
ENSMUST00000108046 | ENTREZGENE | |
ENSMUST00000108046.8 | UniProtKB/TrEMBL | |
ENSMUST00000141156.3 | UniProtKB/TrEMBL | |
InterPro | MGARP | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MGARP_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:67749 | UniProtKB/Swiss-Prot |
MGD | MGI:1914999 | ENTREZGENE |
NCBI Gene | 67749 | ENTREZGENE |
PANTHER | PROTEIN MGARP | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR22910 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | AIF-MLS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Mgarp | PhenoGen |
UniProt | D3Z134 | ENTREZGENE, UniProtKB/TrEMBL |
G3X9T4_MOUSE | UniProtKB/TrEMBL | |
HUMMR_MOUSE | UniProtKB/Swiss-Prot | |
Q78IW0_MOUSE | UniProtKB/TrEMBL | |
Q8VI64 | ENTREZGENE | |
Q96EB2 | ENTREZGENE | |
Q9D9Y5 | ENTREZGENE | |
UniProt Secondary | Q96EB2 | UniProtKB/Swiss-Prot |
Q9D9Y5 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2012-06-26 | Mgarp | mitochondria localized glutamic acid rich protein | 4930583H14Rik | RIKEN cDNA 4930583H14 gene | Symbol and/or name change | 5135510 | APPROVED |