Slc22a8 (solute carrier family 22 member 8) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Slc22a8 (solute carrier family 22 member 8) Chinchilla lanigera
Analyze
Symbol: Slc22a8
Name: solute carrier family 22 member 8
RGD ID: 8901704
Description: ENCODES a protein that exhibits antiporter activity (ortholog); organic anion transmembrane transporter activity (ortholog); prostaglandin transmembrane transporter activity (ortholog); INVOLVED IN glutathione transport (ortholog); prostaglandin transport (ortholog); quaternary ammonium group transport (ortholog); PARTICIPATES IN ibuprofen pharmacodynamics pathway; ibuprofen pharmacokinetics pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Experimental Liver Cirrhosis (ortholog); Human Influenza (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 22 (organic anion transporter), member 8
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955599283,929 - 300,796 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955599284,038 - 299,603 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Slc22a8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955599283,929 - 300,796 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955599284,038 - 299,603 (+)NCBIChiLan1.0ChiLan1.0
SLC22A8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,992,824 - 63,015,841 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,989,154 - 63,015,841 (-)EnsemblGRCh38hg38GRCh38
GRCh371162,760,296 - 62,783,313 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361162,516,872 - 62,539,887 (-)NCBINCBI36Build 36hg18NCBI36
Build 341162,516,872 - 62,539,887NCBI
Celera1160,084,341 - 60,107,363 (-)NCBICelera
Cytogenetic Map11q12.3NCBI
HuRef1159,089,368 - 59,112,301 (-)NCBIHuRef
CHM1_11162,643,053 - 62,666,076 (-)NCBICHM1_1
T2T-CHM13v2.01162,982,101 - 63,005,127 (-)NCBIT2T-CHM13v2.0
Slc22a8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39198,568,576 - 8,589,199 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl198,568,618 - 8,589,199 (+)EnsemblGRCm39 Ensembl
GRCm38198,591,254 - 8,611,835 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl198,591,254 - 8,611,835 (+)EnsemblGRCm38mm10GRCm38
MGSCv37198,665,744 - 8,686,325 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36198,658,334 - 8,678,879 (+)NCBIMGSCv36mm8
Celera198,349,417 - 8,369,998 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.44NCBI
Slc22a8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81214,925,506 - 214,945,516 (+)NCBIGRCr8
mRatBN7.21205,496,331 - 205,516,378 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1205,498,084 - 205,517,450 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1213,904,489 - 213,921,937 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01220,941,693 - 220,959,924 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01213,634,411 - 213,652,643 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01224,799,444 - 224,818,482 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,800,252 - 224,818,482 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,735,287 - 231,755,261 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,269,366 - 211,287,596 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11211,427,795 - 211,446,026 (+)NCBI
Celera1203,011,366 - 203,029,496 (+)NCBICelera
Cytogenetic Map1q43NCBI
SLC22A8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2964,214,698 - 64,237,854 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11165,259,865 - 65,282,950 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01158,345,026 - 58,368,089 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11161,696,354 - 61,719,413 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1161,696,354 - 61,719,413 (-)Ensemblpanpan1.1panPan2
SLC22A8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11853,709,592 - 53,728,595 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1853,709,591 - 53,728,578 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1852,315,443 - 52,334,482 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01854,754,911 - 54,773,992 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1854,754,940 - 54,773,983 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11853,856,934 - 53,875,969 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01853,431,286 - 53,450,303 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01854,218,623 - 54,237,679 (+)NCBIUU_Cfam_GSD_1.0
Slc22a8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494710,205,484 - 10,229,431 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936581319,260 - 343,300 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936581319,372 - 343,171 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC22A8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl28,782,060 - 8,800,997 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.128,782,030 - 8,800,998 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,124,926 - 8,143,912 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC22A8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1110,885,895 - 10,909,739 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl110,886,690 - 10,910,546 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038108,240,303 - 108,262,690 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc22a8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249261,374,103 - 1,388,586 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249261,373,804 - 1,390,248 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000000504   ⟹   ENSCLAP00000000475
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955599283,929 - 300,796 (+)Ensembl
RefSeq Acc Id: XM_005414750   ⟹   XP_005414807
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955599284,038 - 299,603 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005414751   ⟹   XP_005414808
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955599284,038 - 299,603 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005414752   ⟹   XP_005414809
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955599284,038 - 299,603 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005414807 (Get FASTA)   NCBI Sequence Viewer  
  XP_005414808 (Get FASTA)   NCBI Sequence Viewer  
  XP_005414809 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000000475
  ENSCLAP00000000475.1
RefSeq Acc Id: XP_005414809   ⟸   XM_005414752
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UG70 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005414807   ⟸   XM_005414750
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UG70 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005414808   ⟸   XM_005414751
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSCLAP00000000475   ⟸   ENSCLAT00000000504

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000390 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000504 ENTREZGENE
  ENSCLAT00000000504.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS_dom UniProtKB/TrEMBL
  MFS_sugar_transport-like UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  Orgcat_transp/SVOP UniProtKB/TrEMBL
  Sugar_transporter_CS UniProtKB/TrEMBL
NCBI Gene Slc22a8 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 22 MEMBER UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 22 MEMBER 8 UniProtKB/TrEMBL
Pfam Sugar_tr UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
  SUGAR_TRANSPORT_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A8C2UG70 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc22a8  solute carrier family 22 member 8    solute carrier family 22 (organic anion transporter), member 8  Symbol and/or name change 5135510 APPROVED