Ptp4a1 (protein tyrosine phosphatase 4A1) - Rat Genome Database

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Gene: Ptp4a1 (protein tyrosine phosphatase 4A1) Chinchilla lanigera
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Symbol: Ptp4a1
Name: protein tyrosine phosphatase 4A1
RGD ID: 8897517
Description: ENCODES a protein that exhibits protein tyrosine phosphatase activity (ortholog); INVOLVED IN positive regulation of cell migration (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955502322,105 - 329,220 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955502322,827 - 329,226 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ptp4a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955502322,105 - 329,220 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955502322,827 - 329,226 (-)NCBIChiLan1.0ChiLan1.0
PTP4A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38663,516,440 - 63,583,588 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl663,521,746 - 63,583,588 (+)EnsemblGRCh38hg38GRCh38
GRCh37664,226,345 - 64,293,493 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36664,339,879 - 64,351,448 (+)NCBINCBI36Build 36hg18NCBI36
Build 34664,340,378 - 64,351,244NCBI
Celera662,442,473 - 62,454,047 (+)NCBICelera
Cytogenetic Map6q12NCBI
HuRef661,461,747 - 61,473,329 (+)NCBIHuRef
CHM1_1664,448,190 - 64,459,766 (+)NCBICHM1_1
T2T-CHM13v2.0664,662,355 - 64,729,529 (+)NCBIT2T-CHM13v2.0
Ptp4a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39130,979,384 - 30,988,838 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl130,979,383 - 30,988,851 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl130,979,383 - 30,988,390 (-)EnsemblGRCm39 Ensembl
GRCm38130,940,303 - 30,949,877 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl130,940,302 - 30,949,770 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl130,940,302 - 30,949,309 (-)EnsemblGRCm38mm10GRCm38
MGSCv37130,997,148 - 31,006,600 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36130,886,135 - 30,894,291 (-)NCBIMGSCv36mm8
Celera130,745,276 - 30,754,732 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map111.47NCBI
Ptp4a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8940,710,250 - 40,718,176 (-)NCBIGRCr8
mRatBN7.2933,214,201 - 33,245,046 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl933,214,208 - 33,221,964 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx941,706,932 - 41,714,858 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0946,838,082 - 46,846,016 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0945,119,940 - 45,127,874 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0937,223,363 - 37,254,222 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl937,223,729 - 37,231,291 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl93,896,337 - 3,899,315 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0936,028,286 - 36,059,131 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4929,617,636 - 29,625,197 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1929,618,696 - 29,626,440 (-)NCBI
Celera931,034,176 - 31,042,102 (-)NCBICelera
Cytogenetic Map9q21NCBI
PTP4A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2578,439,210 - 78,443,766 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1673,099,104 - 73,105,570 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0661,257,780 - 61,269,097 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1666,529,894 - 66,541,665 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl666,530,382 - 66,541,672 (+)Ensemblpanpan1.1panPan2
PTP4A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11227,044,470 - 27,053,181 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1227,044,533 - 27,052,314 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1226,953,087 - 26,961,741 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01227,579,933 - 27,588,608 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1227,579,753 - 27,622,432 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11227,084,459 - 27,093,127 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01227,166,923 - 27,175,589 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01227,264,042 - 27,272,715 (+)NCBIUU_Cfam_GSD_1.0
Ptp4a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494662,514,567 - 62,524,902 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364761,435,295 - 1,441,142 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTP4A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl145,170,468 - 45,180,289 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1145,169,913 - 45,180,293 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2150,511,780 - 50,521,596 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTP4A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11711,215,005 - 11,248,911 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605817,511,518 - 17,545,432 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptp4a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475321,918,461 - 21,923,873 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475321,918,445 - 21,926,451 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000000925   ⟹   ENSCLAP00000000888
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955502322,105 - 329,220 (-)Ensembl
RefSeq Acc Id: XM_005406875   ⟹   XP_005406932
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955502322,827 - 329,226 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005406932 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000000888
  ENSCLAP00000000888.1
RefSeq Acc Id: XP_005406932   ⟸   XM_005406875
- UniProtKB: A0A8C2UN97 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000000888   ⟸   ENSCLAT00000000925

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000692 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000925 ENTREZGENE
  ENSCLAT00000000925.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.190.10 UniProtKB/TrEMBL
InterPro Dual-sp_phosphatase_cat-dom UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  PTP UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  Tyr_Pase_dom UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL_dom UniProtKB/TrEMBL
NCBI Gene Ptp4a1 ENTREZGENE
PANTHER PROTEIN TYROSINE PHOSPHATASE TYPE IVA 1 UniProtKB/TrEMBL
  TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE UniProtKB/TrEMBL
Pfam DSPc UniProtKB/TrEMBL
PROSITE TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL UniProtKB/TrEMBL
SMART PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/TrEMBL
UniProt A0A8C2UN97 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-19 Ptp4a1  protein tyrosine phosphatase 4A1    protein tyrosine phosphatase type IVA, member 1  Symbol and/or name change 5135510 APPROVED