Ptp4a1 (protein tyrosine phosphatase 4a1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ptp4a1 (protein tyrosine phosphatase 4a1) Mus musculus
Analyze
Symbol: Ptp4a1
Name: protein tyrosine phosphatase 4a1
RGD ID: 62263
MGI Page MGI
Description: Predicted to enable protein tyrosine phosphatase activity. Involved in positive regulation of cell migration. Predicted to be located in cytoplasmic side of plasma membrane. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including alimentary system; bladder wall; nervous system; olfactory epithelium; and retina. Orthologous to human PTP4A1 (protein tyrosine phosphatase 4A1).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AA415290; AU019864; C130021B01; MGC102117; MGC25304; Pr; Prl-1; protein tyrosine phosphatase type IVA 1; protein-tyrosine phosphatase 4a1; protein-tyrosine phosphatase of regenerating liver 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm13363   Gm15801   Gm2791   Gm5052   Gm5582   Gm5951   Gm8783  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39130,979,384 - 30,988,846 (-)NCBIGRCm39mm39
GRCm39 Ensembl130,979,383 - 30,988,390 (-)Ensembl
GRCm39 Ensembl130,979,383 - 30,988,851 (-)Ensembl
GRCm38130,940,303 - 30,949,877 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl130,940,302 - 30,949,309 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl130,940,302 - 30,949,770 (-)EnsemblGRCm38mm10GRCm38
MGSCv37130,997,148 - 31,006,600 (-)NCBIGRCm37mm9NCBIm37
MGSCv36130,886,135 - 30,894,291 (-)NCBImm8
Celera130,745,276 - 30,754,732 (-)NCBICelera
Cytogenetic Map1BNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(2,4,5-trichlorophenoxy)acetic acid  (EXP)
(S)-colchicine  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
2-nitrofluorene  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP,ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (EXP)
8-Br-cAMP  (ISO)
acetylsalicylic acid  (ISO)
acrylamide  (ISO)
adenine  (ISO)
aflatoxin B1  (ISO)
aldrin  (EXP)
ammonium chloride  (ISO)
amphetamine  (ISO)
arachidonic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (ISO)
butanal  (ISO)
C60 fullerene  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chloroethene  (EXP)
chloroprene  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
cobalt dichloride  (EXP)
copper(II) sulfate  (EXP)
coumestrol  (ISO)
cycloheximide  (ISO)
cyclophosphamide  (EXP)
dexamethasone  (EXP,ISO)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (EXP)
dichromium trioxide  (ISO)
diethylstilbestrol  (ISO)
doxorubicin  (EXP)
Enterolactone  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
fipronil  (ISO)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
fumonisin B1  (EXP)
furan  (ISO)
gamma-hexachlorocyclohexane  (ISO)
gentamycin  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
isoprenaline  (EXP)
lead diacetate  (EXP,ISO)
leflunomide  (ISO)
medroxyprogesterone acetate  (ISO)
mercury dichloride  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (ISO)
nimesulide  (ISO)
ochratoxin A  (ISO)
oxycodone  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP,ISO)
phytoestrogen  (ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP,ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
propiconazole  (EXP)
rac-lactic acid  (ISO)
rimonabant  (EXP)
rotenone  (ISO)
sevoflurane  (ISO)
silicon dioxide  (EXP)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (EXP,ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
theophylline  (ISO)
torcetrapib  (ISO)
triacsin C  (ISO)
trichloroethene  (ISO)
trovafloxacin  (EXP,ISO)
valproic acid  (EXP,ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Additional References at PubMed
PMID:9514946   PMID:10194868   PMID:10349636   PMID:10747914   PMID:10922068   PMID:10934024   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11278933   PMID:12477932   PMID:12782572  
PMID:12904583   PMID:15226823   PMID:15489334   PMID:15782199   PMID:16107646   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17673310   PMID:21267068   PMID:21677750   PMID:21873635  
PMID:22009749   PMID:23106268   PMID:23555575   PMID:25377314   PMID:27666520   PMID:27899452   PMID:29057934   PMID:32325033  


Genomics

Comparative Map Data
Ptp4a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39130,979,384 - 30,988,846 (-)NCBIGRCm39mm39
GRCm39 Ensembl130,979,383 - 30,988,390 (-)Ensembl
GRCm39 Ensembl130,979,383 - 30,988,851 (-)Ensembl
GRCm38130,940,303 - 30,949,877 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl130,940,302 - 30,949,309 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl130,940,302 - 30,949,770 (-)EnsemblGRCm38mm10GRCm38
MGSCv37130,997,148 - 31,006,600 (-)NCBIGRCm37mm9NCBIm37
MGSCv36130,886,135 - 30,894,291 (-)NCBImm8
Celera130,745,276 - 30,754,732 (-)NCBICelera
Cytogenetic Map1BNCBI
PTP4A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl663,521,746 - 63,583,588 (+)EnsemblGRCh38hg38GRCh38
GRCh38663,516,440 - 63,583,588 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37664,226,345 - 64,293,493 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36664,339,879 - 64,351,448 (+)NCBINCBI36hg18NCBI36
Build 34664,340,378 - 64,351,244NCBI
Celera662,442,473 - 62,454,047 (+)NCBI
Cytogenetic Map6q12NCBI
HuRef661,461,747 - 61,473,329 (+)NCBIHuRef
CHM1_1664,448,190 - 64,459,766 (+)NCBICHM1_1
Ptp4a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2933,214,201 - 33,245,046 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl933,214,208 - 33,221,964 (-)Ensembl
Rnor_6.0937,223,363 - 37,254,222 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl93,896,337 - 3,899,315 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl937,223,729 - 37,231,291 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0936,028,286 - 36,059,131 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4929,617,636 - 29,625,197 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1929,618,696 - 29,626,440 (-)NCBI
Celera931,034,176 - 31,042,102 (-)NCBICelera
Cytogenetic Map9q21NCBI
Ptp4a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955502322,105 - 329,220 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955502322,827 - 329,226 (-)NCBIChiLan1.0ChiLan1.0
PTP4A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1666,529,894 - 66,541,665 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl666,530,382 - 66,541,672 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0661,257,780 - 61,269,097 (+)NCBIMhudiblu_PPA_v0panPan3
PTP4A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11227,044,470 - 27,053,181 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1227,044,533 - 27,052,314 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1226,953,087 - 26,961,741 (+)NCBI
ROS_Cfam_1.01227,579,933 - 27,588,608 (+)NCBI
ROS_Cfam_1.0 Ensembl1227,579,753 - 27,622,432 (+)Ensembl
UMICH_Zoey_3.11227,084,459 - 27,093,127 (+)NCBI
UNSW_CanFamBas_1.01227,166,923 - 27,175,589 (+)NCBI
UU_Cfam_GSD_1.01227,264,042 - 27,272,715 (+)NCBI
Ptp4a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494662,514,567 - 62,524,902 (+)NCBI
SpeTri2.0NW_0049364761,435,295 - 1,441,142 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTP4A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl145,170,468 - 45,181,741 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1145,169,913 - 45,180,293 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2150,511,780 - 50,521,596 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTP4A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11711,215,005 - 11,248,911 (-)NCBIChlSab1.1chlSab2
ChlSab1.11711,215,005 - 11,248,911 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605817,511,518 - 17,545,432 (-)NCBIVero_WHO_p1.0
Ptp4a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475321,918,445 - 21,926,451 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH135845  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1BUniSTS
RH124380  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1BUniSTS
Cytogenetic Map2A3UniSTS
Ptp4a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1BUniSTS
cM Map1 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1281197036812128Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1281197036812128Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1387139637871663Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1494244138942441Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1963436143634520Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11130140145301401Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11902627053026373Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11902627053026373Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11902627053026373Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11930000053300000Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12307051073937756Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2551111058234112Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12551111062907723Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12600000060000000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1181
Count of miRNA genes:592
Interacting mature miRNAs:733
Transcripts:ENSMUST00000027232, ENSMUST00000076587, ENSMUST00000124445, ENSMUST00000130934, ENSMUST00000153681, ENSMUST00000178652
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI451864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA315780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U84411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000027232   ⟹   ENSMUSP00000027232
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl130,979,384 - 30,988,836 (-)Ensembl
GRCm38.p6 Ensembl130,940,303 - 30,949,755 (-)Ensembl
RefSeq Acc Id: ENSMUST00000076587   ⟹   ENSMUSP00000110861
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl130,980,661 - 30,988,838 (-)Ensembl
GRCm38.p6 Ensembl130,941,580 - 30,949,757 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130934
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl130,982,302 - 30,983,385 (-)Ensembl
GRCm38.p6 Ensembl130,943,221 - 30,944,304 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153681
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl130,981,028 - 30,985,507 (-)Ensembl
GRCm38.p6 Ensembl130,941,947 - 30,946,426 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232841   ⟹   ENSMUSP00000156862
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl130,979,383 - 30,988,390 (-)Ensembl
GRCm38.p6 Ensembl130,940,302 - 30,949,309 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233506   ⟹   ENSMUSP00000156424
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl130,979,383 - 30,988,851 (-)Ensembl
GRCm38.p6 Ensembl130,940,302 - 30,949,770 (-)Ensembl
RefSeq Acc Id: ENSMUST00000238874   ⟹   ENSMUSP00000159162
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl130,988,665 - 30,988,772 (-)Ensembl
GRCm38.p6 Ensembl130,949,584 - 30,949,691 (-)Ensembl
RefSeq Acc Id: NM_011200   ⟹   NP_035330
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39130,979,384 - 30,988,836 (-)NCBI
GRCm38130,940,303 - 30,949,755 (-)NCBI
MGSCv37130,997,148 - 31,006,600 (-)RGD
Celera130,745,276 - 30,754,732 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006495798   ⟹   XP_006495861
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39130,979,384 - 30,988,846 (-)NCBI
GRCm38130,940,303 - 30,949,877 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006495799   ⟹   XP_006495862
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39130,979,384 - 30,988,435 (-)NCBI
GRCm38130,940,303 - 30,949,354 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162791   ⟹   XP_036018684
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39130,979,384 - 30,988,435 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_035330   ⟸   NM_011200
- UniProtKB: Q63739 (UniProtKB/Swiss-Prot),   B9EKL6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006495861   ⟸   XM_006495798
- Peptide Label: isoform X1
- UniProtKB: Q63739 (UniProtKB/Swiss-Prot),   B9EKL6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006495862   ⟸   XM_006495799
- Peptide Label: isoform X1
- UniProtKB: Q63739 (UniProtKB/Swiss-Prot),   B9EKL6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000027232   ⟸   ENSMUST00000027232
RefSeq Acc Id: ENSMUSP00000159162   ⟸   ENSMUST00000238874
RefSeq Acc Id: ENSMUSP00000156424   ⟸   ENSMUST00000233506
RefSeq Acc Id: ENSMUSP00000110861   ⟸   ENSMUST00000076587
RefSeq Acc Id: ENSMUSP00000156862   ⟸   ENSMUST00000232841
RefSeq Acc Id: XP_036018684   ⟸   XM_036162791
- Peptide Label: isoform X1
Promoters
RGD ID:6873348
Promoter ID:EPDNEW_M125
Type:single initiation site
Name:Ptp4a1_2
Description:Mus musculus protein tyrosine phosphatase 4a1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M126  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38130,948,676 - 30,948,736EPDNEW
RGD ID:6873350
Promoter ID:EPDNEW_M126
Type:multiple initiation site
Name:Ptp4a1_1
Description:Mus musculus protein tyrosine phosphatase 4a1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M125  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38130,949,757 - 30,949,817EPDNEW
RGD ID:6818321
Promoter ID:MM_KWN:333
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   Liver,   Lung,   MEF_B6
Transcripts:OTTMUST00000050560
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36131,001,071 - 31,001,732 (-)MPROMDB
RGD ID:6818320
Promoter ID:MM_KWN:334
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   Brain,   Liver,   Lung
Transcripts:OTTMUST00000050559
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36131,001,791 - 31,003,717 (-)MPROMDB
RGD ID:6817804
Promoter ID:MM_KWN:335
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NR_002686_2_GM15801,   NR_002686_GM15801,   NR_002688,   NR_002688_GM13363,   NR_002945_2_GM8783,   NR_002945_GM8783,   OTTMUST00000050557,   OTTMUST00000050558,   UC007ANI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36131,005,921 - 31,007,302 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1277096 AgrOrtholog
Ensembl Genes ENSMUSG00000026064 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSG00000117310 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000027232 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000110861 UniProtKB/TrEMBL
  ENSMUSP00000156424 UniProtKB/TrEMBL
  ENSMUSP00000156862 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000159162 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027232 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000076587 UniProtKB/TrEMBL
  ENSMUST00000232841 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000233506 UniProtKB/TrEMBL
  ENSMUST00000238874 UniProtKB/TrEMBL
Gene3D-CATH 3.90.190.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Dual-sp_phosphatase_cat-dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19243 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1277096 ENTREZGENE
NCBI Gene 19243 ENTREZGENE
Pfam DSPc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ptp4a1 PhenoGen
PROSITE TYR_PHOSPHATASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PTPc_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A3B2W3H6_MOUSE UniProtKB/TrEMBL
  A0A3F2YNM1_MOUSE UniProtKB/TrEMBL
  A0A5F8MQ01_MOUSE UniProtKB/TrEMBL
  B9EKL6 ENTREZGENE, UniProtKB/TrEMBL
  Q63739 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary O09097 UniProtKB/Swiss-Prot
  O09154 UniProtKB/Swiss-Prot
  Q3UFU9 UniProtKB/Swiss-Prot