Crip1 (cysteine rich protein 1) - Rat Genome Database

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Gene: Crip1 (cysteine rich protein 1) Chinchilla lanigera
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Symbol: Crip1
Name: cysteine rich protein 1
RGD ID: 8895370
Description: ENCODES a protein that exhibits peptide binding (ortholog); zinc ion binding (ortholog); INVOLVED IN cellular response to antibiotic (ortholog); cellular response to UV-B (ortholog); immune response (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cysteine-rich protein 1; cysteine-rich protein 1 (intestinal)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555383,683,747 - 3,686,468 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Crip1Chinchillacytoplasm located_inISOCRIP1 (Homo sapiens)9068941 PMID:20415737 more ...UniProtPMID:20415737 more ...

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Crip1Chinchillapeptide binding enablesISOCRIP1 (Homo sapiens)9068941 PMID:18670594UniProtPMID:18670594
Crip1Chinchillazinc ion binding enablesISOCRIP1 (Homo sapiens)9068941 PMID:9126610UniProtPMID:9126610


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:30032202  



Crip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555383,683,747 - 3,686,468 (+)NCBIChiLan1.0ChiLan1.0
CRIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814105,486,886 - 105,488,947 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14105,486,317 - 105,488,947 (+)EnsemblGRCh38hg38GRCh38
GRCh3714105,953,223 - 105,955,284 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614105,024,594 - 105,026,171 (+)NCBINCBI36Build 36hg18NCBI36
Build 3414105,024,593 - 105,026,167NCBI
Celera1486,004,651 - 86,006,568 (+)NCBICelera
Cytogenetic Map14q32.33NCBI
HuRef1486,151,418 - 86,153,286 (+)NCBIHuRef
CHM1_114105,890,975 - 105,892,843 (+)NCBICHM1_1
T2T-CHM13v2.01499,736,255 - 99,738,315 (+)NCBIT2T-CHM13v2.0
Crip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912113,115,632 - 113,117,499 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12113,109,936 - 113,117,499 (+)EnsemblGRCm39 Ensembl
GRCm3812113,152,012 - 113,153,879 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12113,146,316 - 113,153,879 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712114,390,223 - 114,392,090 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612113,599,820 - 113,601,687 (+)NCBIMGSCv36mm8
Celera12114,367,853 - 114,369,721 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1261.59NCBI
Crip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86138,047,801 - 138,055,672 (+)NCBIGRCr8
mRatBN7.26132,226,746 - 132,234,620 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6132,226,746 - 132,234,620 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6132,395,928 - 132,403,668 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06132,686,073 - 132,693,813 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06132,061,146 - 132,069,019 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06137,959,171 - 137,967,042 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6137,959,171 - 137,967,042 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06146,953,514 - 146,961,385 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46138,156,366 - 138,161,127 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16138,162,743 - 138,165,342 (+)NCBI
Celera6129,765,196 - 129,773,068 (+)NCBICelera
Cytogenetic Map6q32NCBI
CRIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215106,669,273 - 106,676,689 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114105,891,619 - 105,893,192 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl14105,914,119 - 105,915,365 (+)Ensemblpanpan1.1panPan2
CRIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1872,784,726 - 72,786,108 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl872,784,788 - 72,786,108 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha872,294,909 - 72,296,297 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0873,072,668 - 73,074,056 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl873,072,736 - 73,074,056 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1872,753,372 - 72,754,760 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0872,801,213 - 72,802,601 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0873,192,688 - 73,194,076 (+)NCBIUU_Cfam_GSD_1.0
Crip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086401,272,091 - 1,273,738 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936621101,046 - 102,664 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936621101,046 - 102,660 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC110258364
(Sus scrofa - pig)
No map positions available.
CRIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12483,385,005 - 83,386,596 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2483,384,529 - 83,386,903 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605370,843,615 - 70,845,255 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Crip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473453,570 - 57,431 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473453,570 - 55,181 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_005410877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01071175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBBH01002381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_005410877   ⟹   XP_005410934
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555383,683,747 - 3,686,468 (+)NCBI
Sequence:
Protein RefSeqs XP_005410934 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000008763.1
RefSeq Acc Id: XP_005410934   ⟸   XM_005410877
- Sequence:
LIM zinc-binding



1 to 13 of 13 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000006126 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008891.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/TrEMBL
InterPro Znf_LIM UniProtKB/TrEMBL
NCBI Gene LOC102009760 ENTREZGENE
PANTHER CYSTEINE-RICH PROTEIN 1 UniProtKB/TrEMBL
  CYSTEINE-RICH PROTEIN CRIP FAMILY MEMBER UniProtKB/TrEMBL
Pfam LIM UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt A0A8C2V7Q4_CHILA UniProtKB/TrEMBL
1 to 13 of 13 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Crip1  cysteine rich protein 1    cysteine-rich protein 1 (intestinal)  Symbol and/or name change 5135510 APPROVED
2015-08-25 Crip1  cysteine-rich protein 1 (intestinal)  LOC102009760  paxillin-like  Symbol and/or name change 5135510 APPROVED