Crip1 (cysteine rich protein 1) - Rat Genome Database

Name: Crip1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Crip1 (cysteine rich protein 1) Chinchilla lanigera

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Symbol:

Crip1

Name:

cysteine rich protein 1

RGD ID:

8895370

Description:

ENCODES a protein that exhibits peptide binding (ortholog); zinc ion binding (ortholog); INVOLVED IN cellular response to antibiotic (ortholog); cellular response to UV-B (ortholog); immune response (ortholog); FOUND IN cytoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cysteine-rich protein 1; cysteine-rich protein 1 (intestinal)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955538	3,683,747 - 3,686,468 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to antibiotic (ISO)

cellular response to UV-B (ISO)

immune response (ISO)

intrinsic apoptotic signaling pathway in response to DNA damage (ISO)

prostate gland stromal morphogenesis (ISO)

regulation of gene expression (ISO)

response to zinc ion (ISO)

Cellular Component

cytoplasm (ISO)

Molecular Function

peptide binding (ISO)

zinc ion binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Crip1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955538	3,683,747 - 3,686,468 (+)	NCBI	ChiLan1.0	ChiLan1.0

CRIP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	105,486,886 - 105,488,947 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	105,486,317 - 105,488,947 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	105,953,223 - 105,955,284 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	105,024,594 - 105,026,171 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	105,024,593 - 105,026,167	NCBI
Celera	14	86,004,651 - 86,006,568 (+)	NCBI		Celera
Cytogenetic Map	14	q32.33	NCBI
HuRef	14	86,151,418 - 86,153,286 (+)	NCBI		HuRef
CHM1_1	14	105,890,975 - 105,892,843 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	99,736,255 - 99,738,315 (+)	NCBI		T2T-CHM13v2.0

Crip1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	113,115,632 - 113,117,499 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	113,109,936 - 113,117,499 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	113,152,012 - 113,153,879 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	113,146,316 - 113,153,879 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	114,390,223 - 114,392,090 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	113,599,820 - 113,601,687 (+)	NCBI		MGSCv36	mm8
Celera	12	114,367,853 - 114,369,721 (+)	NCBI		Celera
Cytogenetic Map	12	F1	NCBI
cM Map	12	61.59	NCBI

Crip1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	138,047,801 - 138,055,672 (+)	NCBI		GRCr8
mRatBN7.2	6	132,226,746 - 132,234,620 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	132,226,746 - 132,234,620 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	132,395,928 - 132,403,668 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	132,686,073 - 132,693,813 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	132,061,146 - 132,069,019 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	137,959,171 - 137,967,042 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	137,959,171 - 137,967,042 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	146,953,514 - 146,961,385 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	138,156,366 - 138,161,127 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	138,162,743 - 138,165,342 (+)	NCBI
Celera	6	129,765,196 - 129,773,068 (+)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

CRIP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	106,669,273 - 106,676,689 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	105,891,619 - 105,893,192 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1 Ensembl	14	105,914,119 - 105,915,365 (+)	Ensembl	panpan1.1		panPan2

CRIP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	72,784,726 - 72,786,108 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	72,784,788 - 72,786,108 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	72,294,909 - 72,296,297 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	73,072,668 - 73,074,056 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	73,072,736 - 73,074,056 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	72,753,372 - 72,754,760 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	72,801,213 - 72,802,601 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	73,192,688 - 73,194,076 (+)	NCBI		UU_Cfam_GSD_1.0

Crip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	1,272,091 - 1,273,738 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936621	101,046 - 102,664 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936621	101,046 - 102,660 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC110258364
(Sus scrofa - pig)

No map positions available.

CRIP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	83,385,005 - 83,386,596 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	83,384,529 - 83,386,903 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	70,843,615 - 70,845,255 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Crip1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	53,570 - 57,431 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	53,570 - 55,181 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005410877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01071175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01002381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005410877 ⟹ XP_005410934

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955538	3,683,747 - 3,686,468 (+)	NCBI

Sequence:

show sequence

TTTTTTTTTTTTTTTTTTTTTGAGGTGGATGTGTCGGGTGAGGAGGAGGCTAGCTAGGAGTGGC
TGAAGGGACAAGGCAAGGGGAAGGCCTTGGGGGCTGGGAGTGTGTGTGTGGCGGATGGCTCCTT
CGGGTATGGGGTCCACAGAGCAGGAAGGAGAGGGGTCTATCAATATGCTACTTGGCTGTGACCC
AGCATTGGACTTTTAAACTGAACTCCACCCAGGAAGAGGTCTGAGCTAAGGAGGTCACCCCAGG
AACCCCTCTGGGAGGCTGCAGGCCCCACCCTTCAGGTCTCCATGGGCCTGGATGGCCCCTCAGG
CTTCCTCATTCTCAGGGCAGGACAGGACAGTCTCTGCCTGGCACCAGCTGGGCGGCCTCCACCT
TAGCTGGGCTTGGACTTGGACCGATCTGAGTGCTGGGCGCTTCCCAGAGATAAGATACCCTCCC
CACCTGAGAATCTCTGAGGCAGCCTAGGGGTGGTCTCCCCTCCTTGCCCCCAGCTCATTGGCCC
CCAGATTTAGCCTCTGCTGTCCTGTGGAGGAGTTGCTCTGCCTGGAGCTCCCTTTTCCAAGTTC
CCCAGGGATGTTCCTGCTGCGATCTGCAGATTTGGGAGAGCAGTGGCGTGAAGGGAGCAGGCAG
AGGTTGGATGGCCCCTTGGGCCTGGTGGGCTGGAAGACCCCAGCAGTGCTGAGGTTCAGTGTCC
TCAGCCTCTTCCTAGGGGAACACAAAGTGTGAGGAGACTCTCACATGTTAATTTGCTTTCTGCG
AATTAGAAGTGACCTTATGCCCTCCCTGGCTCCCACAGACCTCGGACTCTCGCAGGGGCATCCT
GTGGCCTGGGGTGGGGCACATCTTCCTGCCCGCTGGCTCACAGGAACCTTGAGATGCGCCTGGG
CGGGTACTGCGAAGCACCCTGCCCCAGGGATCCCCGGGGTCCCCGCACCCCCGCTCTTCCCTCG
CCAGACGGGTCCCGCCCGGGGAGCGCGTGGACAGTCCACAGTTCGCCGCTGGCCCGCCTCCATT
CGAGTTCCCGAGGTCCAAGTCTGGGCTCGGGGGCGGGGCAAGGAGGCGGGGCATCAGGGGCGGG
GCCCCTGGGTCCCTCAAAGGCGCGGACCCGAGAGTTCCACCCCGTCCCGCGCCCACAGCCATCT
GCAGGTCCGCTGTAGTCCCTGTCCTGGACGCGCCGCCATGCCCAAGTGCCCCAAGTGCGAGAAG
GAGGTGTATTTTGCGGAGCGGGTGACCTCGATGGGCAAGGACTGGCATCGGTCCTGCCTGAAGT
GTGAAAAGTGTGGAAAGACGCTGACCTCTGGGGGTCACTCTGAGCATGAAGGCAAGCCTTACTG
CAACCACCCCTGCTACTCTGCCATGTTTGGGCCCAAAGGCTTTGGGCGGGGTGGCGCTGAGAGT
CACACCTTCAAGTAGACCCAGGTTTCAGAGACCCCATCCGTGGCTACCTGCTGGGCCACTGGTC
ATCCAGACAGATACCAGGCCTTATCCCCAGAGATCCAGGGCTCCCAGCAGCCCCTCATGTCTTC
AATAAACCTGAACACTTGGAAGGCC

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Protein Sequences


Protein RefSeqs	XP_005410934	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000008763.1

RefSeq Acc Id:

XP_005410934 ⟸ XM_005410877

- Sequence:

show sequence

MLICFLRIRSDLMPSLAPTDLGLSQGHPVAWGGAHLPARWLTGTLRCAWAGTAKHPAPGIPGVP
APPLFPRQTGPARGARGQSTVRRWPASIRVPEVQVWARGRGKEAGHQGRGPWVPQRRGPESSTP
SRAHSHLQVRCSPCPGRAAMPKCPKCEKEVYFAERVTSMGKDWHRSCLKCEKCGKTLTSGGHSE
HEGKPYCNHPCYSAMFGPKGFGRGGAESHTFK

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Protein Domains

LIM zinc-binding

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000006126	UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000008891.1	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine Rich Protein	UniProtKB/TrEMBL
InterPro	Znf_LIM	UniProtKB/TrEMBL
NCBI Gene	LOC102009760	ENTREZGENE
PANTHER	CYSTEINE-RICH PROTEIN 1	UniProtKB/TrEMBL
	CYSTEINE-RICH PROTEIN CRIP FAMILY MEMBER	UniProtKB/TrEMBL
Pfam	LIM	UniProtKB/TrEMBL
PROSITE	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
SMART	LIM	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
UniProt	A0A8C2V7Q4_CHILA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Crip1	cysteine rich protein 1		cysteine-rich protein 1 (intestinal)	Symbol and/or name change	5135510	APPROVED
2015-08-25	Crip1	cysteine-rich protein 1 (intestinal)	LOC102009760	paxillin-like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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