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Gene: Cd93 (CD93 molecule) Chinchilla lanigera

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Symbol:

Cd93

Name:

CD93 molecule

RGD ID:

8893417

Description:

ENCODES a protein that exhibits complement component C1q complex binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN angiogenesis (ortholog); cell-cell adhesion (ortholog); ASSOCIATED WITH familial hyperinsulinemic hypoglycemia 1 (ortholog); thyroid gland carcinoma (ortholog); FOUND IN cell surface (ortholog); cytoplasmic vesicle (ortholog); plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

complement component C1q receptor

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CD93 (CD93 molecule)	NCBI	Ortholog
Mus musculus (house mouse):	Cd93 (CD93 antigen)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cd93 (CD93 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CD93 (CD93 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CD93 (CD93 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cd93 (CD93 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CD93 (CD93 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CD93 (CD93 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cd93 (CD93 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	30,252,580 - 30,255,313 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	30,244,231 - 30,255,184 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial hyperinsulinemic hypoglycemia 1 (ISO)

thyroid gland carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

angiogenesis (ISO)

cell-cell adhesion (ISO)

Cellular Component

cell surface (ISO)

cytoplasmic vesicle (ISO)

plasma membrane (ISO)

Molecular Function

complement component C1q complex binding (ISO)

protein binding (ISO)

signaling receptor activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Cd93
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	30,252,580 - 30,255,313 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	30,244,231 - 30,255,184 (-)	NCBI	ChiLan1.0	ChiLan1.0

CD93
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	23,079,360 - 23,086,324 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	23,065,139 - 23,086,324 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	23,059,997 - 23,066,961 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	23,007,993 - 23,014,977 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	23,007,994 - 23,014,977	NCBI
Celera	20	23,133,371 - 23,140,349 (-)	NCBI		Celera
Cytogenetic Map	20	p11.21	NCBI
HuRef	20	23,021,512 - 23,028,490 (-)	NCBI		HuRef
CHM1_1	20	23,060,691 - 23,067,675 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	23,120,610 - 23,145,801 (-)	NCBI		T2T-CHM13v2.0

Cd93
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	148,278,571 - 148,285,455 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	148,278,560 - 148,285,483 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	148,436,651 - 148,443,535 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	148,436,640 - 148,443,563 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	148,262,387 - 148,269,271 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	148,128,092 - 148,134,976 (-)	NCBI		MGSCv36	mm8
Celera	2	149,711,496 - 149,718,416 (-)	NCBI		Celera
Cytogenetic Map	2	G3	NCBI
cM Map	2	73.48	NCBI

Cd93
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	156,345,019 - 156,351,537 (-)	NCBI		GRCr8
mRatBN7.2	3	135,891,859 - 135,898,378 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	135,891,859 - 135,898,378 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	139,834,863 - 139,841,377 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	148,418,996 - 148,425,510 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	146,117,490 - 146,124,008 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	142,778,798 - 142,783,774 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	142,778,770 - 142,783,774 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	149,189,164 - 149,194,140 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	137,188,528 - 137,193,457 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	137,094,100 - 137,099,030 (-)	NCBI
Celera	3	134,737,086 - 134,742,072 (-)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

CD93
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	23,952,735 - 23,964,893 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	23,949,569 - 23,961,733 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	23,022,834 - 23,033,440 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	23,375,310 - 23,384,789 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	23,377,777 - 23,384,789 (-)	Ensembl	panpan1.1		panPan2

CD93
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	559,570 - 565,909 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	560,025 - 563,211 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	577,238 - 591,243 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	948,872 - 962,890 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	956,336 - 962,371 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	547,813 - 561,814 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	657,002 - 663,862 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	931,201 - 945,209 (+)	NCBI		UU_Cfam_GSD_1.0

Cd93
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	149,105,642 - 149,110,420 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936620	2,526,158 - 2,533,558 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936620	2,526,179 - 2,531,603 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CD93
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	30,233,933 - 30,239,692 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	30,233,275 - 30,240,041 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	34,381,631 - 34,387,846 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CD93
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	52,074,823 - 52,082,768 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	52,074,730 - 52,082,029 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666078	6,886,388 - 6,893,304 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cd93
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	22,908,327 - 22,914,770 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	22,908,525 - 22,914,781 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005380960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_260326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01016660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01091933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000017752 ⟹ ENSCLAP00000017580

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955415	30,252,580 - 30,255,313 (-)	Ensembl

RefSeq Acc Id:

XM_005380960 ⟹ XP_005381017

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955415	30,251,612 - 30,255,184 (-)	NCBI

Sequence:

show sequence

AATTTCGTGATGGGTTACTGAGGGATCTCATTCAGTTCCCCAAATCTCTGCCTGCTCCTTAGCT
GCCATTTCAGTTTCTCAATCCAGATCAAGCAGCCGGTACATCTCGGAGCTGCGCCTGTCATTCT
AGATTGCAGCTTTTCCACATCTCAGGCCAGAGACCCTGCACGGCGACCTGGCCCCTTTCAGGAA
CAACAGAACCCGTGAAAGCAGCAGGCGTTGGAAAGCTATTCACTGCAGGAAGCCCCGGCATCCG
GTGAGAAGCAAGAAGTAGGAGGCACAGGATGCGCCTTGGGTCAGGGGTACGCTAGCGACAGCAG
CCTCCGTATCAGAGCTGCTGGGGCTCCACACTCAGTGCCCCGGGGAGCACAGCTGGGAGCCGGG
GTCCAAGCTCCTGCGGTTGCTGTGGTCACTGTGGGGCTTCTGGCCTCTTGCGACGGAAAATTGG
AGGCAGGATGGCCGGCCCCAGGGACTTTTTCCTGCTGCTACTCCTGGGCCAGCCCTGGGCAGCG
GCCGCTGCCCATACTGCAGAGGCAGCGGCGGAGGCTGTGGTATGCTCAGGGACCGCCTGCTACA
CTGCCCACTGGGGCAAGCTGAGCGCAGCTGAAGCCCAGGACATCTGCAGCCAGAATGGGGGCAA
CCTGGCCACGGTGAAGAGTGAGGAGGAGGCCCGGCTCATTCAGCGCTCCCTGGCCCAGCTCCTG
AGGTCGCGGGCACCCCTGGCAGCGAGGATGGGCAAGTTCTGGGTGGGGCTCCAGCGTGAGAAGG
GCAAGTGCTTGAACCCTGAGCTGCCGCTGAAGGGCTTCAGCTGGGTGGGCGGCGGGGAGGACAC
AGAGTACACAAACTGGCACAAAGAACTCAAGAGCTCCTGTCTCTTCCGGCGCTGCGTGGCCCTG
ATACTGGACTTGTCTGAGATCCCCCAGCCTGGCCGCCTCCTCAAGTGGACTGAGGGCCCCTGCG
GGTCTTATGGCAACCCAGGAAGCAGCACCGAGGGCTTTGTGTGCAAATTCAGCTTCAAAGGCAT
GTGCCGGCCTCTGGCTCTGGGGGGCCCAGGCCAGGTAAACTACAGCACCCCTTTCAGGGCCACT
GCCTCCTCACTGGATGCTGTGCCATTTGCTTCCTTGGCCAGCGTGGTCTGTGAAGCTGGGGCTG
AGCAGCGGGGCTATGAACTGGTGTGCAGGGAGAAGGTGACCAACGTGTTCGACTGGGGCAACAC
CGGGCCCCTGTGCATCAACCCTGAGCTTGGCTGCAGCTTCAGCAACGGAGGCTGTGAGCAGGAC
TGCTTCGAGGGGGGCGCTGGCTCCTTCCGCTGTGGCTGCAGGCCTGGCTTCCGTCTGCGGGATG
ACCTGGTGTCCTGCGCCTCTAGGAACCCGTGCAGCTCTAGCCCCTGCAAGGGGGAGGCCACCTG
TGTCCTTAGCCCCCAGGGGGACAGCTACACGTGCCACTGCCCCCATGGCTACCAGCTGGATGCA
AGCCAGCTGGATTGCATAGATGTGGATGAGTGCCAGGATGAACCTTGTGCCCAGGAGTGTGTCA
ACACGGATGGGGGCTTCCTCTGCGAGTGCTGGGTGGGATACACACCTGGTGGCCCTGGAGAGGA
GGCCTGTGTAGACGTGGACGAGTGTGCCTTCGACCCTGTGCCCTGCACCCAGCACTGCACTAAC
ACCCCTGGCTCTTTCCACTGTTCCTGCCAGCCGGGCTATGTGCTGTCTGGGGAGAACGCCACCC
AGTGTGAGGATGAGGACGAGTGCGCGGACCCCGTGGGCAACCCCTGCCGTGGCCCATGTTCCAA
CGTGCCGGGCTCCTTCCGCTGTGGCTGCCTGGAAGGCTGGATGCTGGCTCCCGACGGGCTCTCC
TGTGTCCCGGACCCTGCGTCCTCAGCATCCCCGGCTGGGCTCCTGCCAGAGGATGAGCAAGCTG
GAAAGTGGGGCACAGCGACTCCCACCACCATGCCCCACAGCATGACCACTTCCACCAGGGGCTC
TGAGGATTTCTCCACAGGGACATTCTCCATGGGGAGGGCGTCCTTGTCCTCCGATGTCCCCACC
TCCTCTGCCCACCCCAAAGTGCCAACCCCCAGCCGGAGCCCTGGCCTTGGCACGGAGCCGGGCA
CCCCTTTGTCCAAAGGTGCTGCTGGCCATGGCCAGCCGATGGGTGAGGACTCTGTGGCCTCTCC
CAGCGAGGACAGTGAGGATGGGCAGAGTCTGCTGCTGTTCTACATCCTGGGTACAGTGGTAGCC
ATCTCCCTCCTGCTGGCCCTGGCTCTAGGGCTCCTGGTCTGTCGCAAGCGGAGAGCCAAGAGGG
AGATAAAGGAGAAGAAGTCGCAGAATGCAGCTGACCGTTACGCCTGGGTCCCTGAGCGGGCTGA
GGGCCGTGAGAATCAGTACAGTCCAACACCTGGGTCAGACTGCTGAAGGGGAGATGGCCCAGGA
CACGTCCGGTCTGCTGCCATCACCCCCAGAGGGAAGAGAAGACCACACCTCCGGAAGCCTGGAT
GACCCAATGCCTTCCCCACAAGGCCTGTGGCTTGGGAGGTGCAGGTATTTTCTCCACGTCAGAG
ATATTTTCTGTGTCCCCCTGTGACCTTGGGGACTTTGTGAACACAAACGGTTCCCATGAAATCC
TCCTTTCCAAATTCAGATGCAGCTGACTCTCTTTCTCCCCTGGATTTGGTGGGGCCAGGAGCCA
GGTCCCAAGGGCTCCCTTTGCCCCTGTGTGCTCCTGTCCTCCAAGCGGAGAGTGGCGGCTGGTG
CGTTAGCACTGCAACGTGTGGGCAGCCCTGTCCCTTGATGATCTGACTGCACAAGAAGCCCCGT
GCTGCCAGAGGGAGCTTACTCAGACTGGAACCAGCTCTCTCTGTCTGTATCCGTTCTGCCTGCT
CAGCCCCTTGGCGCAGCGGAAACCTTCAGAATGGCCGGAAGTAAGATCCCTGCTCCATGAAACA
GGAAGTATAGACGTGCATCCTCTGGTTCTTAAGTTTCCTGTAGTCTTGGGTTTATTTGTAAGTG
AGGTTGGAAAAATATTATAAAAATTGCTTGAAGGAATGGAGGGCTTGGTGTAAGCACGACATGT
AAGGGCCGGCAGAGCTTGCTTCATCTGCGCAGATGGAGATGAATATGCTGGATTATGGAAAAGC
CAGGGCAGCTTAGGCAGCATGGCCTGCTGTGGCTCCCACTGCTCCTGCTCAAGGCAGGCTGAGC
AGAACACAAATGGATCTGTGCAGCTGTGCTTTTGAATTGTTTTATCACAGGGCAGAGGAGAGAT
TATACCTGCTGGGGTTCAGTCCTATGGATGCTCAGGGATCCTTCATCTCTCTTTGCCTTAGGGG
TTGGGAAAGGAAGGGAGTGGGAAAGAGAGAATAAATAACACCCTTTGTAACACA

hide sequence

RefSeq Acc Id:

XR_260326

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955415	30,244,231 - 30,255,184 (-)	NCBI

Sequence:

show sequence

AATTTCGTGATGGGTTACTGAGGGATCTCATTCAGTTCCCCAAATCTCTGCCTGCTCCTTAGCT
GCCATTTCAGTTTCTCAATCCAGATCAAGCAGCCGGTACATCTCGGAGCTGCGCCTGTCATTCT
AGATTGCAGCTTTTCCACATCTCAGGCCAGAGACCCTGCACGGCGACCTGGCCCCTTTCAGGAA
CAACAGAACCCGTGAAAGCAGCAGGCGTTGGAAAGCTATTCACTGCAGGAAGCCCCGGCATCCG
GTGAGAAGCAAGAAGTAGGAGGCACAGGATGCGCCTTGGGTCAGGGGTACGCTAGCGACAGCAG
CCTCCGTATCAGAGCTGCTGGGGCTCCACACTCAGTGCCCCGGGGAGCACAGCTGGGAGCCGGG
GTCCAAGCTCCTGCGGTTGCTGTGGTCACTGTGGGGCTTCTGGCCTCTTGCGACGGAAAATTGG
AGGCAGGATGGCCGGCCCCAGGGACTTTTTCCTGCTGCTACTCCTGGGCCAGCCCTGGGCAGCG
GCCGCTGCCCATACTGCAGAGGCAGCGGCGGAGGCTGTGGTATGCTCAGGGACCGCCTGCTACA
CTGCCCACTGGGGCAAGCTGAGCGCAGCTGAAGCCCAGGACATCTGCAGCCAGAATGGGGGCAA
CCTGGCCACGGTGAAGAGTGAGGAGGAGGCCCGGCTCATTCAGCGCTCCCTGGCCCAGCTCCTG
AGGTCGCGGGCACCCCTGGCAGCGAGGATGGGCAAGTTCTGGGTGGGGCTCCAGCGTGAGAAGG
GCAAGTGCTTGAACCCTGAGCTGCCGCTGAAGGGCTTCAGCTGGGTGGGCGGCGGGGAGGACAC
AGAGTACACAAACTGGCACAAAGAACTCAAGAGCTCCTGTCTCTTCCGGCGCTGCGTGGCCCTG
ATACTGGACTTGTCTGAGATCCCCCAGCCTGGCCGCCTCCTCAAGTGGACTGAGGGCCCCTGCG
GGTCTTATGGCAACCCAGGAAGCAGCACCGAGGGCTTTGTGTGCAAATTCAGCTTCAAAGGCAT
GTGCCGGCCTCTGGCTCTGGGGGGCCCAGGCCAGGTAAACTACAGCACCCCTTTCAGGGCCACT
GCCTCCTCACTGGATGCTGTGCCATTTGCTTCCTTGGCCAGCGTGGTCTGTGAAGCTGGGGCTG
AGCAGCGGGGCTATGAACTGGTGTGCAGGGAGAAGGTGACCAACGTGTTCGACTGGGGCAACAC
CGGGCCCCTGTGCATCAACCCTGAGCTTGGCTGCAGCTTCAGCAACGGAGGCTGTGAGCAGGAC
TGCTTCGAGGGGGGCGCTGGCTCCTTCCGCTGTGGCTGCAGGCCTGGCTTCCGTCTGCGGGATG
ACCTGGTGTCCTGCGCCTCTAGGAACCCGTGCAGCTCTAGCCCCTGCAAGGGGGAGGCCACCTG
TGTCCTTAGCCCCCAGGGGGACAGCTACACGTGCCACTGCCCCCATGGCTACCAGCTGGATGCA
AGCCAGCTGGATTGCATAGATGTGGATGAGTGCCAGGATGAACCTTGTGCCCAGGAGTGTGTCA
ACACGGATGGGGGCTTCCTCTGCGAGTGCTGGGTGGGATACACACCTGGTGGCCCTGGAGAGGA
GGCCTGTGTAGACGTGGACGAGTGTGCCTTCGACCCTGTGCCCTGCACCCAGCACTGCACTAAC
ACCCCTGGCTCTTTCCACTGTTCCTGCCAGCCGGGCTATGTGCTGTCTGGGGAGAACGCCACCC
AGTGTGAGGATGAGGACGAGTGCGCGGACCCCGTGGGCAACCCCTGCCGTGGCCCATGTTCCAA
CGTGCCGGGCTCCTTCCGCTGTGGCTGCCTGGAAGGCTGGATGCTGGCTCCCGACGGGCTCTCC
TGTGTCCCGGACCCTGCGTCCTCAGCATCCCCGGCTGGGCTCCTGCCAGAGGATGAGCAAGCTG
GAAAGTGGGGCACAGCGACTCCCACCACCATGCCCCACAGCATGACCACTTCCACCAGGGGCTC
TGAGGATTTCTCCACAGGGACATTCTCCATGGGGAGGGCGTCCTTGTCCTCCGATGTCCCCACC
TCCTCTGCCCACCCCAAAGTGCCAACCCCCAGCCGGAGCCCTGGCCTTGGCACGGAGCCGGGCA
CCCCTTTGTCCAAAGGTGCTGCTGGCCATGGCCAGCCGATGGGTGAGGACTCTGTGGCCTCTCC
CAGCGAGGACAGTGAGGATGGGCAGAGTCTGCTGCTGTTCTACATCCTGGGTACAGTGGTAGCC
ATCTCCCTCCTGCTGGCCCTGGCTCTAGGGCTCCTGGTCTGTCGCAAGCGGAGAGCCAAGAGGG
AGATAAAGGAGAAGAAGTCGCAGAATGCAGCTGACCGTTACGCCTGGGTCCCTGAGCGGGCTGA
GGGCCGTGAGAATCAGTACAGTCCAACACCTGGGTCAGACTGCTGAAGGGGAGATGGCCCAGGA
CACGTCCGGTCTGCTGCCATCACCCCCAGAGGGAAGAGAAGACCACACCTCCGGAAGCCTGGAT
GACCCAATGCCTTCCCCACAAGGCCTGTGGCTTGGGAGGTGCAGGTGCCATCCCTGCAGTGGAA
CCATCACTGGAAATAAAACCATGGCCTGTTGTTAAAGGACTGTCTCCATCGACGAGGAAACCAG
ATGCTGATCTGACCCTTGGGTGCTTGAGGGACCAGGGCGGATGTGTAATGGGCCACATCGGTGG
TCCTTACTGGCTTTGTTACGGCTGGAATGCCAACCATGTGAGTCATTTACTCTTCTTGAGCAAA
GGAAATGATGAGTCATTTGGGCCTCGTTATTTCAAAATGTGGAGTCATACTGGGCTGGAATCAA
CTCAAGCCTTCTCTTCACAGTGATTTACAAGACAAACCAAAACTTTAATAAAGATTTGTTGGGG
AAATGAGGGTCATAAGAAAATTTGGTTAAGCATCGTATTGTCTCTCTAGCGTGAGAAACTGAAA
CAGTAAATAAGATCCAAAAGGTACAATAGATATTGTGAGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005381017	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000017580
	ENSCLAP00000017580.1

RefSeq Acc Id:

XP_005381017 ⟸ XM_005380960

- UniProtKB:

A0A8C2VS87 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGPRDFFLLLLLGQPWAAAAAHTAEAAAEAVVCSGTACYTAHWGKLSAAEAQDICSQNGGNLA
TVKSEEEARLIQRSLAQLLRSRAPLAARMGKFWVGLQREKGKCLNPELPLKGFSWVGGGEDTEY
TNWHKELKSSCLFRRCVALILDLSEIPQPGRLLKWTEGPCGSYGNPGSSTEGFVCKFSFKGMCR
PLALGGPGQVNYSTPFRATASSLDAVPFASLASVVCEAGAEQRGYELVCREKVTNVFDWGNTGP
LCINPELGCSFSNGGCEQDCFEGGAGSFRCGCRPGFRLRDDLVSCASRNPCSSSPCKGEATCVL
SPQGDSYTCHCPHGYQLDASQLDCIDVDECQDEPCAQECVNTDGGFLCECWVGYTPGGPGEEAC
VDVDECAFDPVPCTQHCTNTPGSFHCSCQPGYVLSGENATQCEDEDECADPVGNPCRGPCSNVP
GSFRCGCLEGWMLAPDGLSCVPDPASSASPAGLLPEDEQAGKWGTATPTTMPHSMTTSTRGSED
FSTGTFSMGRASLSSDVPTSSAHPKVPTPSRSPGLGTEPGTPLSKGAAGHGQPMGEDSVASPSE
DSEDGQSLLLFYILGTVVAISLLLALALGLLVCRKRRAKREIKEKKSQNAADRYAWVPERAEGR
ENQYSPTPGSDC

hide sequence

Ensembl Acc Id:

ENSCLAP00000017580 ⟸ ENSCLAT00000017752

Protein Domains

C-type lectin EGF-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000012062	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000017752	ENTREZGENE
	ENSCLAT00000017752.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.100.10	UniProtKB/TrEMBL
	Laminin	UniProtKB/TrEMBL
InterPro	C-type_lectin-like	UniProtKB/TrEMBL
	C-type_lectin-like/link_sf	UniProtKB/TrEMBL
	C-type_lectin_domain	UniProtKB/TrEMBL
	cEGF	UniProtKB/TrEMBL
	CTDL_fold	UniProtKB/TrEMBL
	EGF-like_Ca-bd_dom	UniProtKB/TrEMBL
	EGF-like_dom	UniProtKB/TrEMBL
	EGF-type_Asp/Asn_hydroxyl_site	UniProtKB/TrEMBL
	EGF_Ca-bd_CS	UniProtKB/TrEMBL
	Growth_fac_rcpt_cys_sf	UniProtKB/TrEMBL
	NOTCH1_EGF-like	UniProtKB/TrEMBL
NCBI Gene	Cd93	ENTREZGENE
PANTHER	CHONDROLECTIN VARIANT CHODLFDELTAE	UniProtKB/TrEMBL
Pfam	cEGF	UniProtKB/TrEMBL
	EGF_CA	UniProtKB/TrEMBL
	Lectin_C	UniProtKB/TrEMBL
PIRSF	CD93/CD141	UniProtKB/TrEMBL
PROSITE	ASX_HYDROXYL	UniProtKB/TrEMBL
	C_TYPE_LECTIN_2	UniProtKB/TrEMBL
	EGF_2	UniProtKB/TrEMBL
	EGF_3	UniProtKB/TrEMBL
	EGF_CA	UniProtKB/TrEMBL
SMART	CLECT	UniProtKB/TrEMBL
	EGF	UniProtKB/TrEMBL
	EGF_CA	UniProtKB/TrEMBL
Superfamily-SCOP	EGF/Laminin	UniProtKB/TrEMBL
	SSF56436	UniProtKB/TrEMBL
	SSF57184	UniProtKB/TrEMBL
UniProt	A0A8C2VS87	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar