Cd93 (CD93 molecule) - Rat Genome Database

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Gene: Cd93 (CD93 molecule) Ictidomys tridecemlineatus
Analyze
Symbol: Cd93
Name: CD93 molecule
RGD ID: 12444452
Description: ENCODES a protein that exhibits calcium ion binding (inferred); complement component C1q complex binding (inferred); extracellular matrix binding (inferred); INVOLVED IN cell migration (inferred); cell-cell adhesion (inferred); ASSOCIATED WITH genetic disease (ortholog); thyroid gland carcinoma (ortholog); FOUND IN cell surface (inferred); cytoplasmic vesicle (inferred); external side of plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: complement component C1q receptor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640149,105,642 - 149,110,420 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366202,526,158 - 2,533,558 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366202,526,179 - 2,531,603 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cd93
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640149,105,642 - 149,110,420 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366202,526,158 - 2,533,558 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366202,526,179 - 2,531,603 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD93
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382023,079,360 - 23,086,324 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2023,079,360 - 23,086,324 (-)EnsemblGRCh38hg38GRCh38
GRCh372023,059,997 - 23,066,961 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362023,007,993 - 23,014,977 (-)NCBINCBI36Build 36hg18NCBI36
Build 342023,007,994 - 23,014,977NCBI
Celera2023,133,371 - 23,140,349 (-)NCBICelera
Cytogenetic Map20p11.21NCBI
HuRef2023,021,512 - 23,028,490 (-)NCBIHuRef
CHM1_12023,060,691 - 23,067,675 (-)NCBICHM1_1
T2T-CHM13v2.02023,120,610 - 23,145,801 (-)NCBIT2T-CHM13v2.0
Cd93
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392148,278,571 - 148,285,455 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2148,278,560 - 148,285,483 (-)EnsemblGRCm39 Ensembl
GRCm382148,436,651 - 148,443,535 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2148,436,640 - 148,443,563 (-)EnsemblGRCm38mm10GRCm38
MGSCv372148,262,387 - 148,269,271 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362148,128,092 - 148,134,976 (-)NCBIMGSCv36mm8
Celera2149,711,496 - 149,718,416 (-)NCBICelera
Cytogenetic Map2G3NCBI
cM Map273.48NCBI
Cd93
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83156,345,019 - 156,351,537 (-)NCBIGRCr8
mRatBN7.23135,891,859 - 135,898,378 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3135,891,859 - 135,898,378 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3139,834,863 - 139,841,377 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03148,418,996 - 148,425,510 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03146,117,490 - 146,124,008 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03142,778,798 - 142,783,774 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3142,778,770 - 142,783,774 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03149,189,164 - 149,194,140 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43137,188,528 - 137,193,457 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13137,094,100 - 137,099,030 (-)NCBI
Celera3134,737,086 - 134,742,072 (-)NCBICelera
Cytogenetic Map3q41NCBI
Cd93
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541530,252,580 - 30,255,313 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541530,244,231 - 30,255,184 (-)NCBIChiLan1.0ChiLan1.0
CD93
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22123,952,735 - 23,964,893 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12023,949,569 - 23,961,733 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02023,022,834 - 23,033,440 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12023,375,310 - 23,384,789 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2023,377,777 - 23,384,789 (-)Ensemblpanpan1.1panPan2
CD93
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.124559,570 - 565,909 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl24560,025 - 563,211 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha24577,238 - 591,243 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.024948,872 - 962,890 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl24956,336 - 962,371 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.124547,813 - 561,814 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.024657,002 - 663,862 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.024931,201 - 945,209 (+)NCBIUU_Cfam_GSD_1.0
CD93
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1730,233,933 - 30,239,692 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11730,233,275 - 30,240,041 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21734,381,631 - 34,387,846 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD93
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1252,074,823 - 52,082,768 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl252,074,730 - 52,082,029 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660786,886,388 - 6,893,304 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd93
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474122,908,327 - 22,914,770 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474122,908,525 - 22,914,781 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005334605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000021446   ⟹   ENSSTOP00000019056
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366202,526,158 - 2,533,558 (+)Ensembl
RefSeq Acc Id: XM_005334605   ⟹   XP_005334662
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640149,105,642 - 149,110,420 (+)NCBI
SpeTri2.0NW_0049366202,526,179 - 2,531,603 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005334662 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000019056.1
Reference Protein Sequences
RefSeq Acc Id: XP_005334662   ⟸   XM_005334605
- UniProtKB: I3N3W0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000019056   ⟸   ENSSTOT00000021446
Protein Domains
C-type lectin   EGF-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024530 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000021446.2 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  cEGF UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
NCBI Gene Cd93 ENTREZGENE
PANTHER CD93 MOLECULE UniProtKB/TrEMBL
  CHONDROLECTIN VARIANT CHODLFDELTAE UniProtKB/TrEMBL
Pfam cEGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  Lectin_C UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
UniProt I3N3W0 ENTREZGENE, UniProtKB/TrEMBL