CD93 (CD93 molecule) - Rat Genome Database

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Gene: CD93 (CD93 molecule) Sus scrofa
Analyze
Symbol: CD93
Name: CD93 molecule
RGD ID: 14255434
Description: ENCODES a protein that exhibits calcium ion binding (inferred); complement component C1q complex binding (inferred); extracellular matrix binding (inferred); INVOLVED IN cell migration (inferred); cell-cell adhesion (inferred); ASSOCIATED WITH genetic disease (ortholog); thyroid gland carcinoma (ortholog); FOUND IN cell surface (inferred); cytoplasmic vesicle (inferred); external side of plasma membrane (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: complement component C1q receptor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1730,233,933 - 30,239,692 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11730,233,275 - 30,240,041 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21734,381,631 - 34,387,846 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CD93
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1730,233,933 - 30,239,692 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11730,233,275 - 30,240,041 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21734,381,631 - 34,387,846 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD93
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382023,079,360 - 23,086,324 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2023,079,360 - 23,086,324 (-)EnsemblGRCh38hg38GRCh38
GRCh372023,059,997 - 23,066,961 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362023,007,993 - 23,014,977 (-)NCBINCBI36Build 36hg18NCBI36
Build 342023,007,994 - 23,014,977NCBI
Celera2023,133,371 - 23,140,349 (-)NCBICelera
Cytogenetic Map20p11.21NCBI
HuRef2023,021,512 - 23,028,490 (-)NCBIHuRef
CHM1_12023,060,691 - 23,067,675 (-)NCBICHM1_1
T2T-CHM13v2.02023,120,610 - 23,145,801 (-)NCBIT2T-CHM13v2.0
Cd93
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392148,278,571 - 148,285,455 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2148,278,560 - 148,285,483 (-)EnsemblGRCm39 Ensembl
GRCm382148,436,651 - 148,443,535 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2148,436,640 - 148,443,563 (-)EnsemblGRCm38mm10GRCm38
MGSCv372148,262,387 - 148,269,271 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362148,128,092 - 148,134,976 (-)NCBIMGSCv36mm8
Celera2149,711,496 - 149,718,416 (-)NCBICelera
Cytogenetic Map2G3NCBI
cM Map273.48NCBI
Cd93
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83156,345,019 - 156,351,537 (-)NCBIGRCr8
mRatBN7.23135,891,859 - 135,898,378 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3135,891,859 - 135,898,378 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3139,834,863 - 139,841,377 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03148,418,996 - 148,425,510 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03146,117,490 - 146,124,008 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03142,778,798 - 142,783,774 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3142,778,770 - 142,783,774 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03149,189,164 - 149,194,140 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43137,188,528 - 137,193,457 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13137,094,100 - 137,099,030 (-)NCBI
Celera3134,737,086 - 134,742,072 (-)NCBICelera
Cytogenetic Map3q41NCBI
Cd93
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541530,252,580 - 30,255,313 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541530,244,231 - 30,255,184 (-)NCBIChiLan1.0ChiLan1.0
CD93
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22123,952,735 - 23,964,893 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12023,949,569 - 23,961,733 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02023,022,834 - 23,033,440 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12023,375,310 - 23,384,789 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2023,377,777 - 23,384,789 (-)Ensemblpanpan1.1panPan2
CD93
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.124559,570 - 565,909 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl24560,025 - 563,211 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha24577,238 - 591,243 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.024948,872 - 962,890 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl24956,336 - 962,371 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.124547,813 - 561,814 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.024657,002 - 663,862 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.024931,201 - 945,209 (+)NCBIUU_Cfam_GSD_1.0
Cd93
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640149,105,642 - 149,110,420 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366202,526,158 - 2,533,558 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366202,526,179 - 2,531,603 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD93
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1252,074,823 - 52,082,768 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl252,074,730 - 52,082,029 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660786,886,388 - 6,893,304 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd93
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474122,908,327 - 22,914,770 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474122,908,525 - 22,914,781 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CD93
177 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 2 5 2 21 2 3 1
Below cutoff 1 2

Sequence


RefSeq Acc Id: ENSSSCT00000007788   ⟹   ENSSSCP00000007579
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1730,233,933 - 30,239,692 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000074939   ⟹   ENSSSCP00000066678
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1730,233,933 - 30,239,592 (-)Ensembl
RefSeq Acc Id: NM_001315577   ⟹   NP_001302506
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11730,237,673 - 30,239,592 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003359917   ⟹   XP_003359965
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11730,233,275 - 30,240,041 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003359965   ⟸   XM_003359917
- Peptide Label: isoform X1
- UniProtKB: F1SAT8 (UniProtKB/TrEMBL),   A0A8D1I666 (UniProtKB/TrEMBL),   A0A480LH06 (UniProtKB/TrEMBL),   A0A8D1W4W5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001302506   ⟸   NM_001315577
- Peptide Label: precursor
- UniProtKB: M5DFC0 (UniProtKB/TrEMBL),   A0A480LH06 (UniProtKB/TrEMBL),   A0A8D1W4W5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000066678   ⟸   ENSSSCT00000074939
RefSeq Acc Id: ENSSSCP00000007579   ⟸   ENSSSCT00000007788
Protein Domains
C-type lectin   EGF-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007116 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005020167 UniProtKB/TrEMBL
  ENSSSCG00015025245 UniProtKB/TrEMBL
  ENSSSCG00025060642 UniProtKB/TrEMBL
  ENSSSCG00030045267 UniProtKB/TrEMBL
  ENSSSCG00040060892 UniProtKB/TrEMBL
  ENSSSCG00045021300 UniProtKB/TrEMBL
  ENSSSCG00050032078 UniProtKB/TrEMBL
  ENSSSCG00060058792 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007788 ENTREZGENE
  ENSSSCT00000007788.5 UniProtKB/TrEMBL
  ENSSSCT00000074939.2 UniProtKB/TrEMBL
  ENSSSCT00005031927.1 UniProtKB/TrEMBL
  ENSSSCT00015033496.1 UniProtKB/TrEMBL
  ENSSSCT00025083024.1 UniProtKB/TrEMBL
  ENSSSCT00030063151.1 UniProtKB/TrEMBL
  ENSSSCT00040082852.1 UniProtKB/TrEMBL
  ENSSSCT00045036374.1 UniProtKB/TrEMBL
  ENSSSCT00045036396.1 UniProtKB/TrEMBL
  ENSSSCT00050043080.1 UniProtKB/TrEMBL
  ENSSSCT00060080181.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  cEGF UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
NCBI Gene CD93 ENTREZGENE
PANTHER C-TYPE LECTIN DOMAIN-CONTAINING 14A UniProtKB/TrEMBL
  CHONDROLECTIN VARIANT CHODLFDELTAE UniProtKB/TrEMBL
Pfam cEGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  Lectin_C UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
UniProt A0A480LH06 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QP56_PIG UniProtKB/TrEMBL
  A0A8D1HY72_PIG UniProtKB/TrEMBL
  A0A8D1I666 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PWA1_PIG UniProtKB/TrEMBL
  A0A8D1W4W5 ENTREZGENE, UniProtKB/TrEMBL
  F1SAT8 ENTREZGENE, UniProtKB/TrEMBL
  M5DFC0 ENTREZGENE
VGNC ID VGNC:108710 ENTREZGENE