Cd93 (CD93 molecule) - Rat Genome Database

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Gene: Cd93 (CD93 molecule) Rattus norvegicus
Analyze
Symbol: Cd93
Name: CD93 molecule
RGD ID: 621251
Description: Predicted to enable complement component C1q complex binding activity and signaling receptor activity. Predicted to be involved in angiogenesis and cell-cell adhesion. Predicted to be located in cell surface; cytoplasmic vesicle; and plasma membrane. Orthologous to human CD93 (CD93 molecule); INTERACTS WITH 1,2,4-trimethylbenzene; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C1q/MBL/SPA receptor; C1qR(p); C1qr1; C1qRp; CD93 antigen; cell surface antigen AA4; complement component 1 q subcomponent receptor 1; complement component 1, q subcomponent, receptor 1; complement component C1q receptor; Ly68; lymphocyte antigen 68
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83156,345,019 - 156,351,537 (-)NCBIGRCr8
mRatBN7.23135,891,859 - 135,898,378 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3135,891,859 - 135,898,378 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3139,834,863 - 139,841,377 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03148,418,996 - 148,425,510 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03146,117,490 - 146,124,008 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03142,778,798 - 142,783,774 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3142,778,770 - 142,783,774 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03149,189,164 - 149,194,140 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43137,188,528 - 137,193,457 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13137,094,100 - 137,099,030 (-)NCBI
Celera3134,737,086 - 134,742,072 (-)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd93Ratthyroid gland carcinoma treatmentISOCD93 (Homo sapiens)151665104 RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd93Ratfamilial hyperinsulinemic hypoglycemia 1  ISOCD93 (Homo sapiens)8554872ClinVar Annotator: match by term: Hyperinsulinemic hypoglycemia more ...ClinVarPMID:38605124

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd93Rat1,2,4-trimethylbenzene increases expressionEXP 6480464pseudocumene results in increased expression of CD93 proteinCTDPMID:17337753
Cd93Rat1,2-dimethylhydrazine multiple interactionsISOCd93 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of CD93 mRNACTDPMID:22206623
Cd93Rat1,2-dimethylhydrazine increases expressionISOCd93 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of CD93 mRNACTDPMID:22206623
Cd93Rat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of CD93 mRNACTDPMID:17557909
Cd93Rat17beta-estradiol decreases expressionISOCd93 (Mus musculus)6480464Estradiol results in decreased expression of CD93 mRNACTDPMID:19484750
Cd93Rat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISOCd93 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Cd93Rat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISOCd93 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Cd93Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOCd93 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of CD93 mRNACTDPMID:21570461
Cd93Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of CD93 mRNACTDPMID:32109520
Cd93Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOCD93 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of CD93 mRNACTDPMID:27913140
Cd93Rat2-butoxyethanol increases expressionISOCd93 (Mus musculus)6480464n-butoxyethanol results in increased expression of CD93 mRNACTDPMID:19812364
Cd93Rat3,3',4,4',5-pentachlorobiphenyl decreases expressionEXP 64804643 more ...CTDPMID:32119087
Cd93Rat3,4-methylenedioxymethamphetamine decreases expressionISOCd93 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of CD93 mRNACTDPMID:26251327
Cd93Rat4,4'-sulfonyldiphenol increases expressionISOCd93 (Mus musculus)6480464bisphenol S results in increased expression of CD93 mRNACTDPMID:30951980 and PMID:39298647
Cd93Rat4-hydroxyphenyl retinamide increases expressionISOCd93 (Mus musculus)6480464Fenretinide results in increased expression of CD93 mRNACTDPMID:28973697
Cd93Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of CD93 mRNACTDPMID:30047161
Cd93Rat7,12-dimethyltetraphene increases expressionEXP 64804649 more ...CTDPMID:19480007
Cd93Ratacetamide increases expressionEXP 6480464acetamide results in increased expression of CD93 mRNACTDPMID:31881176
Cd93Rataconitine decreases expressionEXP 6480464Aconitine results in decreased expression of CD93 proteinCTDPMID:33236894
Cd93Ratacrylamide decreases expressionEXP 6480464Acrylamide results in decreased expression of CD93 mRNACTDPMID:28959563

1 to 20 of 110 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd93Ratangiogenesis involved_inISOCD93 (Homo sapiens)1624291 PMID:28671670RGDPMID:28671670
Cd93Ratangiogenesis involved_inIEAUniProtKB:Q9NPY3 and ensembl:ENSP000002460061600115GO_REF:0000107EnsemblGO_REF:0000107
Cd93Ratcell adhesion involved_inIEAUniProtKB-KW:KW-01301600115GO_REF:0000043UniProtGO_REF:0000043
Cd93Ratcell-cell adhesion involved_inISSUniProtKB:Q9NPY38554076PMID:11994479UniProt 
Cd93Ratcell-cell adhesion involved_inIEAUniProtKB:Q9NPY3 and ensembl:ENSP000002460061600115GO_REF:0000107EnsemblGO_REF:0000107
Cd93Ratcell-cell adhesion involved_inISOCD93 (Homo sapiens)1624291 PMID:11994479RGDPMID:11994479

Cellular Component
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd93Ratcell surface located_inIEAUniProtKB:O89103 and ensembl:ENSMUSP000000968761600115GO_REF:0000107EnsemblGO_REF:0000107
Cd93Ratcell surface located_inISOCd93 (Mus musculus)1624291 PMID:9324354RGDPMID:9324354
Cd93Ratcytoplasmic vesicle located_inIEAUniProtKB:O89103 and ensembl:ENSMUSP000000968761600115GO_REF:0000107EnsemblGO_REF:0000107
Cd93Ratcytoplasmic vesicle located_inISOCd93 (Mus musculus)1624291 PMID:11465094RGDPMID:11465094
Cd93Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Cd93Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Cd93Ratplasma membrane located_inIEAUniProtKB:Q9NPY3 and ensembl:ENSP000002460061600115GO_REF:0000107EnsemblGO_REF:0000107
Cd93Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Cd93Ratplasma membrane located_inIEAUniProtKB:O89103 and ensembl:ENSMUSP000000968761600115GO_REF:0000107EnsemblGO_REF:0000107
Cd93Ratplasma membrane located_inISOCd93 (Mus musculus)1624291 PMID:11465094RGDPMID:11465094
Cd93Ratplasma membrane located_inISOCD93 (Homo sapiens)1624291 RGDGO_REF:0000054
1 to 11 of 11 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cd93Ratcalcium ion binding enablesIEAInterPro:IPR001881 and InterPro:IPR0180971600115GO_REF:0000002InterProGO_REF:0000002
Cd93Ratcarbohydrate binding enablesIEAUniProtKB-KW:KW-04301600115GO_REF:0000043UniProtGO_REF:0000043
Cd93Ratcomplement component C1q complex binding enablesISOCD93 (Homo sapiens)1624291 PMID:11781389RGDPMID:11781389
Cd93Ratcomplement component C1q complex binding enablesIEAUniProtKB:Q9NPY3 and ensembl:ENSP000002460061600115GO_REF:0000107EnsemblGO_REF:0000107
Cd93Ratprotein binding enablesISOCD93 (Homo sapiens)1624291UniProtKB:O14908 more ...RGDPMID:15459234 and PMID:15819698
Cd93Ratsignaling receptor activity enablesISOCD93 (Homo sapiens)1624291 PMID:28671670RGDPMID:28671670
Cd93Ratsignaling receptor activity enablesIEAUniProtKB:Q9NPY3 and ensembl:ENSP000002460061600115GO_REF:0000107EnsemblGO_REF:0000107


1 to 10 of 10 rows
#
Reference Title
Reference Citation
1. Molecular and cellular properties of the rat AA4 antigen, a C-type lectin-like receptor with structural homology to thrombomodulin. Dean YD, etal., J Biol Chem 2000 Nov 3;275(44):34382-92.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Characterization and molecular cloning of rat C1qRp, a receptor on NK cells. Lovik G, etal., Eur J Immunol 2000 Dec;30(12):3355-62.
4. Human C1qRp is identical with CD93 and the mNI-11 antigen but does not bind C1q. McGreal EP, etal., J Immunol. 2002 May 15;168(10):5222-32.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Nine Genes Mediate the Therapeutic Effects of Iodine-131 Radiotherapy in Thyroid Carcinoma Patients. Shuwen H, etal., Dis Markers. 2020 Jun 16;2020:9369341. doi: 10.1155/2020/9369341. eCollection 2020.
1 to 10 of 10 rows
PMID:9047234   PMID:9324354   PMID:10092817   PMID:11465094   PMID:11781389   PMID:19285506   PMID:23979707   PMID:24106277   PMID:36197773   PMID:36336138  



Cd93
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83156,345,019 - 156,351,537 (-)NCBIGRCr8
mRatBN7.23135,891,859 - 135,898,378 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3135,891,859 - 135,898,378 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3139,834,863 - 139,841,377 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03148,418,996 - 148,425,510 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03146,117,490 - 146,124,008 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03142,778,798 - 142,783,774 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3142,778,770 - 142,783,774 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03149,189,164 - 149,194,140 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43137,188,528 - 137,193,457 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13137,094,100 - 137,099,030 (-)NCBI
Celera3134,737,086 - 134,742,072 (-)NCBICelera
Cytogenetic Map3q41NCBI
CD93
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382023,079,360 - 23,086,324 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2023,065,139 - 23,086,324 (-)EnsemblGRCh38hg38GRCh38
GRCh372023,059,997 - 23,066,961 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362023,007,993 - 23,014,977 (-)NCBINCBI36Build 36hg18NCBI36
Build 342023,007,994 - 23,014,977NCBI
Celera2023,133,371 - 23,140,349 (-)NCBICelera
Cytogenetic Map20p11.21NCBI
HuRef2023,021,512 - 23,028,490 (-)NCBIHuRef
CHM1_12023,060,691 - 23,067,675 (-)NCBICHM1_1
T2T-CHM13v2.02023,120,610 - 23,145,801 (-)NCBIT2T-CHM13v2.0
Cd93
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392148,278,571 - 148,285,455 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2148,278,560 - 148,285,483 (-)EnsemblGRCm39 Ensembl
GRCm382148,436,651 - 148,443,535 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2148,436,640 - 148,443,563 (-)EnsemblGRCm38mm10GRCm38
MGSCv372148,262,387 - 148,269,271 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362148,128,092 - 148,134,976 (-)NCBIMGSCv36mm8
Celera2149,711,496 - 149,718,416 (-)NCBICelera
Cytogenetic Map2G3NCBI
cM Map273.48NCBI
Cd93
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541530,252,580 - 30,255,313 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541530,244,231 - 30,255,184 (-)NCBIChiLan1.0ChiLan1.0
CD93
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22123,952,735 - 23,964,893 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12023,949,569 - 23,961,733 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02023,022,834 - 23,033,440 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12023,375,310 - 23,384,789 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2023,377,777 - 23,384,789 (-)Ensemblpanpan1.1panPan2
CD93
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.124559,570 - 565,909 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl24560,025 - 563,211 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha24577,238 - 591,243 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.024948,872 - 962,890 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl24956,336 - 962,371 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.124547,813 - 561,814 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.024657,002 - 663,862 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.024931,201 - 945,209 (+)NCBIUU_Cfam_GSD_1.0
Cd93
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640149,105,642 - 149,110,420 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366202,526,158 - 2,533,558 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366202,526,179 - 2,531,603 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD93
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1730,233,933 - 30,239,692 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11730,233,275 - 30,240,041 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21734,381,631 - 34,387,846 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD93
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1252,074,823 - 52,082,768 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl252,074,730 - 52,082,029 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660786,886,388 - 6,893,304 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd93
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474122,908,327 - 22,914,770 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474122,908,525 - 22,914,781 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Cd93
14 total Variants

Predicted Target Of
Summary Value
Count of predictions:405
Count of miRNA genes:221
Interacting mature miRNAs:265
Transcripts:ENSRNOT00000034256
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 30 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat

1 to 10 of 30 rows
RH137518  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23135,894,126 - 135,894,268 (+)MAPPERmRatBN7.2
Rnor_6.03142,779,533 - 142,779,674NCBIRnor6.0
Rnor_5.03149,189,899 - 149,190,040UniSTSRnor5.0
RGSC_v3.43137,189,263 - 137,189,404UniSTSRGSC3.4
Celera3134,737,821 - 134,737,962UniSTS
Cytogenetic Map3q41UniSTS
Ly68  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23135,897,842 - 135,898,180 (+)MAPPERmRatBN7.2
Rnor_6.03142,783,239 - 142,783,576NCBIRnor6.0
Rnor_5.03149,193,605 - 149,193,942UniSTSRnor5.0
RGSC_v3.43137,192,922 - 137,193,259UniSTSRGSC3.4
Celera3134,741,537 - 134,741,874UniSTS
Cytogenetic Map3q41UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000034256
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3142,781,424 - 142,783,593 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3135,891,859 - 135,898,378 (-)Ensembl
Rnor_6.0 Ensembl3142,778,770 - 142,783,774 (-)Ensembl
RefSeq Acc Id: NM_053383   ⟹   NP_445835
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83156,345,019 - 156,351,537 (-)NCBI
mRatBN7.23135,891,859 - 135,898,378 (-)NCBI
Rnor_6.03142,778,798 - 142,783,774 (-)NCBI
Rnor_5.03149,189,164 - 149,194,140 (-)NCBI
RGSC_v3.43137,188,528 - 137,193,457 (-)RGD
Celera3134,737,086 - 134,742,072 (-)RGD
Sequence:
Protein RefSeqs NP_445835 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF80402 (Get FASTA)   NCBI Sequence Viewer  
  AAG01572 (Get FASTA)   NCBI Sequence Viewer  
  EDL95099 (Get FASTA)   NCBI Sequence Viewer  
  EDL95100 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000089608
  ENSRNOP00000089608.1
GenBank Protein Q9ET61 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_445835   ⟸   NM_053383
- Peptide Label: precursor
- UniProtKB: Q9ET61 (UniProtKB/Swiss-Prot),   Q9JIZ6 (UniProtKB/Swiss-Prot),   A6K7C0 (UniProtKB/TrEMBL)
- Sequence:
C-type lectin   EGF-like

Name Modeler Protein Id AA Range Protein Structure
AF-Q9ET61-F1-model_v2 AlphaFold Q9ET61 1-643 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 40 of 41 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-47508 BioCyc
Ensembl Genes ENSRNOG00000024799 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000076493 ENTREZGENE
  ENSRNOT00000076493.2 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.100.10 UniProtKB/Swiss-Prot
  Laminin UniProtKB/Swiss-Prot
InterPro C-type_lectin-like UniProtKB/Swiss-Prot
  C-type_lectin-like/link_sf UniProtKB/Swiss-Prot
  C-type_lectin_domain UniProtKB/Swiss-Prot
  cEGF UniProtKB/Swiss-Prot
  CTDL_fold UniProtKB/Swiss-Prot
  EGF-like_Ca-bd_dom UniProtKB/Swiss-Prot
  EGF-like_dom UniProtKB/Swiss-Prot
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/Swiss-Prot
  EGF_Ca-bd_CS UniProtKB/Swiss-Prot
  Growth_fac_rcpt_cys_sf UniProtKB/Swiss-Prot
  NOTCH1_EGF-like UniProtKB/Swiss-Prot
KEGG Report rno:84398 UniProtKB/Swiss-Prot
NCBI Gene 84398 ENTREZGENE
PANTHER C-TYPE LECTIN DOMAIN FAMILY 14 MEMBER A PRECURSOR-RELATED UniProtKB/Swiss-Prot
  CHONDROLECTIN VARIANT CHODLFDELTAE UniProtKB/Swiss-Prot
Pfam cEGF UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
  Lectin_C UniProtKB/Swiss-Prot
PhenoGen Cd93 PhenoGen
PROSITE ASX_HYDROXYL UniProtKB/Swiss-Prot
  C_TYPE_LECTIN_2 UniProtKB/Swiss-Prot
  EGF_2 UniProtKB/Swiss-Prot
  EGF_3 UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000024799 RatGTEx
SMART CLECT UniProtKB/Swiss-Prot
  EGF UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot
  SSF56436 UniProtKB/Swiss-Prot
  SSF57184 UniProtKB/Swiss-Prot
UniProt A6K7C0 ENTREZGENE, UniProtKB/TrEMBL
  C1QR1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q9JIZ6 ENTREZGENE
1 to 40 of 41 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-26 Cd93  CD93 molecule  Cd93  CD93 antigen  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-15 Cd93  CD93 antigen  C1qr1  complement component 1, q subcomponent, receptor 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 C1qr1  complement component 1, q subcomponent, receptor 1    lymphocyte antigen 68  Name updated 1299863 APPROVED
2004-09-10 C1qr1  lymphocyte antigen 68  Ly68    Symbol and Name updated 1299863 APPROVED
2002-08-07 Ly68  lymphocyte antigen 68      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_expression present on endothelial cells, platelets, undifferentiated monocytes (ED1+ cells), and circulating NK cells 633262