Fitm1 (fat storage inducing transmembrane protein 1) - Rat Genome Database

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Gene: Fitm1 (fat storage inducing transmembrane protein 1) Chinchilla lanigera
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Symbol: Fitm1
Name: fat storage inducing transmembrane protein 1
RGD ID: 8889751
Description: ENCODES a protein that exhibits diacylglycerol binding (ortholog); triglyceride binding (ortholog); INVOLVED IN fat cell differentiation (ortholog); lipid droplet formation (ortholog); lipid droplet organization (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); Specific Granule Deficiency (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fat storage-inducing transmembrane protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540936,267,121 - 36,268,462 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540936,267,121 - 36,268,462 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fitm1ChinchillaBrain-Lung-Thyroid Syndrome  ISOFITM1 (Homo sapiens)8554872ClinVar Annotator: match by term: Brain-lung-thyroid syndromeClinVarPMID:25741868
Fitm1Chinchillalysinuric protein intolerance  ISOFITM1 (Homo sapiens)8554872ClinVar Annotator: match by term: Lysinuric protein intoleranceClinVarPMID:28492532
Fitm1ChinchillaSpecific Granule Deficiency  ISOFITM1 (Homo sapiens)8554872ClinVar Annotator: match by term: Specific granule deficiencyClinVarPMID:28492532


Biological Process

  

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fitm1Chinchillaendoplasmic reticulum membrane located_inISOFitm1 (Mus musculus)9068941 PMID:18160536 and PMID:20520733BHF-UCLPMID:18160536 and PMID:20520733

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fitm1Chinchilladiacylglycerol binding enablesISOFitm1 (Mus musculus)9068941 PMID:22106267UniProtPMID:22106267
Fitm1Chinchillatriglyceride binding enablesISOFitm1 (Mus musculus)9068941 PMID:22106267UniProtPMID:22106267


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:22301074   PMID:30032202  



Fitm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540936,267,121 - 36,268,462 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540936,267,121 - 36,268,462 (-)NCBIChiLan1.0ChiLan1.0
FITM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381424,130,659 - 24,132,847 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1424,130,659 - 24,132,849 (+)EnsemblGRCh38hg38GRCh38
GRCh371424,599,868 - 24,602,056 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361423,670,608 - 23,671,898 (+)NCBINCBI36Build 36hg18NCBI36
Celera144,465,145 - 4,466,528 (+)NCBICelera
Cytogenetic Map14q12NCBI
HuRef144,715,896 - 4,717,279 (+)NCBIHuRef
CHM1_11424,599,346 - 24,600,729 (+)NCBICHM1_1
T2T-CHM13v2.01418,328,966 - 18,331,154 (+)NCBIT2T-CHM13v2.0
Fitm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391455,813,131 - 55,814,409 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1455,813,074 - 55,814,411 (+)EnsemblGRCm39 Ensembl
GRCm381455,575,674 - 55,576,952 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1455,575,617 - 55,576,954 (+)EnsemblGRCm38mm10GRCm38
MGSCv371456,194,511 - 56,195,789 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361454,529,745 - 54,531,023 (+)NCBIMGSCv36mm8
Celera1453,380,530 - 53,381,808 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.19NCBI
Fitm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81533,034,705 - 33,035,974 (+)NCBIGRCr8
mRatBN7.21529,064,746 - 29,066,015 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1529,064,707 - 29,066,015 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1530,910,449 - 30,911,718 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01532,057,655 - 32,058,924 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01530,300,002 - 30,301,271 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01534,251,805 - 34,253,074 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1534,251,606 - 34,253,073 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01538,142,000 - 38,143,269 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41533,708,626 - 33,709,895 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11533,723,380 - 33,725,595 (+)NCBI
Celera1528,640,667 - 28,641,936 (+)NCBICelera
Cytogenetic Map15p13NCBI
FITM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21525,485,044 - 25,488,412 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11424,701,536 - 24,704,903 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0144,906,504 - 4,909,119 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11423,031,818 - 23,033,459 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1423,031,818 - 23,033,459 (+)Ensemblpanpan1.1panPan2
FITM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.184,127,148 - 4,128,779 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl84,127,488 - 4,128,794 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha84,048,851 - 4,050,451 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.084,237,758 - 4,239,358 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl84,238,067 - 4,239,333 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,928,387 - 3,929,987 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,990,136 - 3,991,736 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.084,252,301 - 4,253,901 (+)NCBIUU_Cfam_GSD_1.0
Fitm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,974,305 - 35,978,696 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936722410,294 - 411,679 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936722410,294 - 411,680 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FITM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,166,912 - 75,168,245 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1775,166,986 - 75,168,240 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2780,438,281 - 80,439,536 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FITM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1241,116,201 - 1,118,814 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl241,117,451 - 1,119,275 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603612,797,952 - 12,800,552 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fitm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248208,402,347 - 8,403,663 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248208,402,347 - 8,407,399 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_005377045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01010454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDK01305527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCLAT00000019375   ⟹   ENSCLAP00000019190
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540936,267,121 - 36,268,462 (-)Ensembl
RefSeq Acc Id: XM_005377045   ⟹   XP_005377102
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540936,267,121 - 36,268,462 (-)NCBI
Sequence:
Protein RefSeqs XP_005377102 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019190
  ENSCLAP00000019190.1
RefSeq Acc Id: XP_005377102   ⟸   XM_005377045
- UniProtKB: A0A8C2VQJ0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000019190   ⟸   ENSCLAT00000019375



1 to 10 of 10 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000013153 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019375 ENTREZGENE
  ENSCLAT00000019375.1 UniProtKB/TrEMBL
InterPro FIT UniProtKB/TrEMBL
  FIT1 UniProtKB/TrEMBL
  FITM1/2 UniProtKB/TrEMBL
NCBI Gene Fitm1 ENTREZGENE
PANTHER FAT STORAGE-INDUCING TRANSMEMBRANE PROTEIN 1 UniProtKB/TrEMBL
  PTHR23129 UniProtKB/TrEMBL
UniProt A0A8C2VQJ0 ENTREZGENE, UniProtKB/TrEMBL
1 to 10 of 10 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Fitm1  fat storage inducing transmembrane protein 1    fat storage-inducing transmembrane protein 1  Symbol and/or name change 5135510 APPROVED