Sdhaf4 (succinate dehydrogenase complex assembly factor 4) - Rat Genome Database

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Gene: Sdhaf4 (succinate dehydrogenase complex assembly factor 4) Chinchilla lanigera
Analyze
Symbol: Sdhaf4
Name: succinate dehydrogenase complex assembly factor 4
RGD ID: 8888662
Description: ENCODES a protein that exhibits enzyme activator activity (ortholog); INVOLVED IN cellular respiration (ortholog); innate immune response (ortholog); mitochondrial respiratory chain complex II assembly (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: succinate dehydrogenase assembly factor 4, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554885,628,341 - 5,645,707 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554885,628,297 - 5,644,384 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Sdhaf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554885,628,341 - 5,645,707 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554885,628,297 - 5,644,384 (+)NCBIChiLan1.0ChiLan1.0
SDHAF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38670,566,930 - 70,598,428 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl670,566,917 - 70,589,569 (+)EnsemblGRCh38hg38GRCh38
GRCh37671,276,633 - 71,299,272 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36671,333,346 - 71,355,327 (+)NCBINCBI36Build 36hg18NCBI36
Build 34671,333,345 - 71,355,327NCBI
Celera671,665,041 - 71,687,022 (+)NCBICelera
Cytogenetic Map6q13NCBI
HuRef668,474,783 - 68,496,774 (+)NCBIHuRef
CHM1_1671,442,976 - 71,464,957 (+)NCBICHM1_1
T2T-CHM13v2.0671,747,474 - 71,770,117 (+)NCBIT2T-CHM13v2.0
Sdhaf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39124,035,020 - 24,044,721 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl124,035,020 - 24,044,737 (-)EnsemblGRCm39 Ensembl
GRCm38123,995,939 - 24,005,640 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl123,995,939 - 24,005,656 (-)EnsemblGRCm38mm10GRCm38
MGSCv37124,002,778 - 24,012,479 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36123,950,221 - 23,959,915 (-)NCBIMGSCv36mm8
Celera123,832,137 - 23,841,860 (-)NCBICelera
Cytogenetic Map1A5NCBI
cM Map19.86NCBI
Sdhaf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8933,904,667 - 33,912,813 (-)NCBIGRCr8
mRatBN7.2926,408,332 - 26,416,478 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx934,918,115 - 34,926,261 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0940,036,410 - 40,044,557 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0938,346,158 - 38,354,304 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0930,243,261 - 30,251,478 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl930,243,610 - 30,251,388 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0929,067,898 - 29,076,116 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4922,713,335 - 22,721,491 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera923,945,793 - 23,953,994 (-)NCBICelera
Cytogenetic Map9q13NCBI
SDHAF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2590,554,858 - 90,576,863 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1688,480,060 - 88,509,848 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0668,402,024 - 68,424,420 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1671,700,165 - 71,722,131 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl671,700,165 - 71,722,125 (+)Ensemblpanpan1.1panPan2
SDHAF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11233,080,545 - 33,089,944 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1233,069,013 - 33,089,930 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1232,927,894 - 32,948,859 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01233,608,662 - 33,629,628 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1233,608,696 - 33,629,614 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11233,139,123 - 33,160,035 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01233,180,881 - 33,201,819 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01233,293,517 - 33,314,461 (+)NCBIUU_Cfam_GSD_1.0
Sdhaf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494668,294,307 - 68,306,697 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366182,451,675 - 2,466,150 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366182,451,717 - 2,461,676 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SDHAF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1174,410,081 - 4,432,885 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl174,410,932 - 4,432,841 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605810,414,639 - 10,437,421 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sdhaf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248199,320,368 - 9,336,572 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248199,320,343 - 9,336,196 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000001153   ⟹   ENSCLAP00000001112
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554885,628,341 - 5,645,707 (+)Ensembl
RefSeq Acc Id: XM_005404476   ⟹   XP_005404533
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554885,628,297 - 5,644,384 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005404533 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001112
  ENSCLAP00000001112.1
RefSeq Acc Id: XP_005404533   ⟸   XM_005404476
- UniProtKB: A0A8C2UJV2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000001112   ⟸   ENSCLAT00000001153


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000854 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001153 ENTREZGENE
  ENSCLAT00000001153.1 UniProtKB/TrEMBL
InterPro SDHF4 UniProtKB/TrEMBL
NCBI Gene LOC102028304 ENTREZGENE
PANTHER SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 4, MITOCHONDRIAL UniProtKB/TrEMBL
  SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 4, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam DUF1674 UniProtKB/TrEMBL
UniProt A0A8C2UJV2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Sdhaf4  succinate dehydrogenase complex assembly factor 4  LOC102028304  chromosome unknown open reading frame, human C6orf57  Symbol and/or name change 5135510 APPROVED