Sdhaf4 (succinate dehydrogenase complex assembly factor 4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Sdhaf4 (succinate dehydrogenase complex assembly factor 4) Heterocephalus glaber
Analyze
Symbol: Sdhaf4
Name: succinate dehydrogenase complex assembly factor 4
RGD ID: 18926266
Description: ENCODES a protein that exhibits enzyme activator activity (ortholog); INVOLVED IN cellular respiration (ortholog); innate immune response (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: succinate dehydrogenase assembly factor 4, mitochondrial; UPF0369 protein C6orf57
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248199,320,368 - 9,336,572 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248199,320,343 - 9,336,196 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Sdhaf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248199,320,368 - 9,336,572 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248199,320,343 - 9,336,196 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SDHAF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38670,566,930 - 70,598,428 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl670,566,917 - 70,589,569 (+)EnsemblGRCh38hg38GRCh38
GRCh37671,276,633 - 71,299,272 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36671,333,346 - 71,355,327 (+)NCBINCBI36Build 36hg18NCBI36
Build 34671,333,345 - 71,355,327NCBI
Celera671,665,041 - 71,687,022 (+)NCBICelera
Cytogenetic Map6q13NCBI
HuRef668,474,783 - 68,496,774 (+)NCBIHuRef
CHM1_1671,442,976 - 71,464,957 (+)NCBICHM1_1
T2T-CHM13v2.0671,747,474 - 71,770,117 (+)NCBIT2T-CHM13v2.0
Sdhaf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39124,035,020 - 24,044,721 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl124,035,020 - 24,044,737 (-)EnsemblGRCm39 Ensembl
GRCm38123,995,939 - 24,005,640 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl123,995,939 - 24,005,656 (-)EnsemblGRCm38mm10GRCm38
MGSCv37124,002,778 - 24,012,479 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36123,950,221 - 23,959,915 (-)NCBIMGSCv36mm8
Celera123,832,137 - 23,841,860 (-)NCBICelera
Cytogenetic Map1A5NCBI
cM Map19.86NCBI
Sdhaf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8933,904,667 - 33,912,813 (-)NCBIGRCr8
mRatBN7.2926,408,332 - 26,416,478 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx934,918,115 - 34,926,261 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0940,036,410 - 40,044,557 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0938,346,158 - 38,354,304 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0930,243,261 - 30,251,478 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl930,243,610 - 30,251,388 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0929,067,898 - 29,076,116 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4922,713,335 - 22,721,491 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera923,945,793 - 23,953,994 (-)NCBICelera
Cytogenetic Map9q13NCBI
Sdhaf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554885,628,341 - 5,645,707 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554885,628,297 - 5,644,384 (+)NCBIChiLan1.0ChiLan1.0
SDHAF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2590,554,858 - 90,576,863 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1688,480,060 - 88,509,848 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0668,402,024 - 68,424,420 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1671,700,165 - 71,722,131 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl671,700,165 - 71,722,125 (+)Ensemblpanpan1.1panPan2
SDHAF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11233,080,545 - 33,089,944 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1233,069,013 - 33,089,930 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1232,927,894 - 32,948,859 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01233,608,662 - 33,629,628 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1233,608,696 - 33,629,614 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11233,139,123 - 33,160,035 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01233,180,881 - 33,201,819 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01233,293,517 - 33,314,461 (+)NCBIUU_Cfam_GSD_1.0
Sdhaf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494668,294,307 - 68,306,697 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366182,451,675 - 2,466,150 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366182,451,717 - 2,461,676 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SDHAF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1174,410,081 - 4,432,885 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl174,410,932 - 4,432,841 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605810,414,639 - 10,437,421 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000005562   ⟹   ENSHGLP00000005491
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248199,320,368 - 9,336,572 (-)Ensembl
RefSeq Acc Id: XM_004864003   ⟹   XP_004864060
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248199,320,343 - 9,336,196 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004864060 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA98007 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005491
GenBank Protein JAO00800 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004864060   ⟸   XM_004864003
- UniProtKB: G5ALU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000005491   ⟸   ENSHGLT00000005562


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004028 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000005562 ENTREZGENE
InterPro SDHF4 UniProtKB/TrEMBL
NCBI Gene Sdhaf4 ENTREZGENE
PANTHER SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 4, MITOCHONDRIAL UniProtKB/TrEMBL
  SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 4, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam DUF1674 UniProtKB/TrEMBL
UniProt G5ALU7 ENTREZGENE, UniProtKB/TrEMBL