Stam2 (signal transducing adaptor molecule 2) - Rat Genome Database

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Gene: Stam2 (signal transducing adaptor molecule 2) Chinchilla lanigera
Analyze
Symbol: Stam2
Name: signal transducing adaptor molecule 2
RGD ID: 8879287
Description: PARTICIPATES IN interleukin-2 signaling pathway; FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: signal transducing adapter molecule 2; signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544017,607,593 - 17,653,140 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544017,611,656 - 17,653,140 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Stam2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544017,607,593 - 17,653,140 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544017,611,656 - 17,653,140 (-)NCBIChiLan1.0ChiLan1.0
STAM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382152,116,801 - 152,175,763 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2152,116,801 - 152,175,763 (-)EnsemblGRCh38hg38GRCh38
GRCh372152,973,315 - 153,032,277 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362152,683,352 - 152,740,752 (-)NCBINCBI36Build 36hg18NCBI36
Build 342152,800,614 - 152,858,014NCBI
Celera2146,587,981 - 146,647,203 (-)NCBICelera
Cytogenetic Map2q23.3NCBI
HuRef2144,859,495 - 144,918,505 (-)NCBIHuRef
CHM1_12152,979,182 - 153,038,398 (-)NCBICHM1_1
T2T-CHM13v2.02152,568,772 - 152,627,796 (-)NCBIT2T-CHM13v2.0
Stam2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39252,582,213 - 52,632,212 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl252,581,676 - 52,632,293 (-)EnsemblGRCm39 Ensembl
GRCm38252,692,206 - 52,742,149 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl252,691,664 - 52,742,281 (-)EnsemblGRCm38mm10GRCm38
MGSCv37252,547,725 - 52,601,183 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36252,514,215 - 52,564,158 (-)NCBIMGSCv36mm8
Celera254,422,788 - 54,476,181 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map230.41NCBI
Stam2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8357,597,557 - 57,643,915 (-)NCBIGRCr8
mRatBN7.2337,186,145 - 37,234,810 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl337,186,145 - 37,234,812 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx340,561,810 - 40,608,247 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0349,146,594 - 49,193,031 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0346,931,520 - 46,977,955 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0338,230,676 - 38,277,433 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl338,230,618 - 38,277,440 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0343,329,060 - 43,378,948 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4334,213,013 - 34,259,375 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1334,109,386 - 34,155,747 (-)NCBI
Celera335,327,231 - 35,373,439 (-)NCBICelera
Cytogenetic Map3q12NCBI
STAM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21354,800,956 - 54,860,293 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B54,815,936 - 54,875,241 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B39,416,452 - 39,475,861 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B156,656,386 - 156,715,402 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B156,656,386 - 156,715,402 (-)Ensemblpanpan1.1panPan2
STAM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11953,213,904 - 53,256,711 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1953,216,274 - 53,256,756 (-)NCBICanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1953,216,274 - 53,256,756 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2628,400,408 - 28,445,085 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01954,723,824 - 54,768,716 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1954,723,828 - 54,768,179 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11953,440,262 - 53,484,908 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01953,510,688 - 53,555,731 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01954,974,715 - 55,019,344 (-)NCBIUU_Cfam_GSD_1.0
Stam2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303116,135,645 - 116,190,942 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646925,431,917 - 25,482,347 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646925,432,067 - 25,481,089 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15115,404 - 168,657 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115115,297 - 168,659 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215157,393,889 - 157,424,041 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STAM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11037,536,164 - 37,591,850 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1037,539,082 - 37,591,869 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040161,963,224 - 162,018,541 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stam2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248664,909,479 - 4,962,691 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000001909   ⟹   ENSCLAP00000001866
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544017,607,593 - 17,653,140 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000001910   ⟹   ENSCLAP00000001867
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544017,613,248 - 17,634,255 (-)Ensembl
RefSeq Acc Id: XM_005390812   ⟹   XP_005390869
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544017,611,656 - 17,653,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517489   ⟹   XP_013372943
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544017,611,656 - 17,653,140 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005390869 (Get FASTA)   NCBI Sequence Viewer  
  XP_013372943 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001866
  ENSCLAP00000001866.1
  ENSCLAP00000001867.1
RefSeq Acc Id: XP_005390869   ⟸   XM_005390812
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UJJ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013372943   ⟸   XM_013517489
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UJJ5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000001867   ⟸   ENSCLAT00000001910
Ensembl Acc Id: ENSCLAP00000001866   ⟸   ENSCLAT00000001909
Protein Domains
SH3   VHS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001380 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001909 ENTREZGENE
  ENSCLAT00000001909.1 UniProtKB/TrEMBL
  ENSCLAT00000001910.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.1940 UniProtKB/TrEMBL
  1.25.40.90 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro ENTH_VHS UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  STAM UniProtKB/TrEMBL
  STAM2_SH3 UniProtKB/TrEMBL
  UIM_dom UniProtKB/TrEMBL
  VHS_dom UniProtKB/TrEMBL
NCBI Gene Stam2 ENTREZGENE
PANTHER HEMATOPOIETIC LINEAGE CELL-SPECIFIC PROTEIN-RELATED UniProtKB/TrEMBL
  JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE UniProtKB/TrEMBL
Pfam SH3_1 UniProtKB/TrEMBL
  UIM UniProtKB/TrEMBL
  VHS UniProtKB/TrEMBL
PRINTS P67PHOX UniProtKB/TrEMBL
  SH3DOMAIN UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/TrEMBL
  UIM UniProtKB/TrEMBL
  VHS UniProtKB/TrEMBL
SMART SH3 UniProtKB/TrEMBL
  UIM UniProtKB/TrEMBL
  VHS UniProtKB/TrEMBL
Superfamily-SCOP SSF48464 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
UniProt A0A8C2UJJ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UJM9_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Stam2  signal transducing adaptor molecule 2    signal transducing adaptor molecule (SH3 domain and ITAM motif) 2  Symbol and/or name change 5135510 APPROVED