Slc39a14 (solute carrier family 39 member 14) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Slc39a14 (solute carrier family 39 member 14) Chinchilla lanigera
Analyze
Symbol: Slc39a14
Name: solute carrier family 39 member 14
RGD ID: 8873551
Description: ENCODES a protein that exhibits cadmium ion transmembrane transporter activity (ortholog); ferrous iron transmembrane transporter activity (ortholog); iron ion transmembrane transporter activity (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); cellular response to insulin stimulus (ortholog); chondrocyte differentiation (ortholog); PARTICIPATES IN iron uptake pathway; ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); genetic disease (ortholog); hypermanganesemia with dystonia 2 (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); early endosome membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 39 (zinc transporter), member 14; zinc transporter ZIP14
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540345,827,942 - 45,867,309 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540345,828,247 - 45,867,309 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc39a14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540345,827,942 - 45,867,309 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540345,828,247 - 45,867,309 (+)NCBIChiLan1.0ChiLan1.0
SLC39A14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38822,367,278 - 22,434,129 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl822,367,278 - 22,434,129 (+)EnsemblGRCh38hg38GRCh38
GRCh37822,224,791 - 22,291,642 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36822,280,737 - 22,336,143 (+)NCBINCBI36Build 36hg18NCBI36
Celera821,186,754 - 21,253,275 (+)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef820,766,860 - 20,833,952 (+)NCBIHuRef
CHM1_1822,426,738 - 22,493,738 (+)NCBICHM1_1
T2T-CHM13v2.0822,641,238 - 22,707,959 (+)NCBIT2T-CHM13v2.0
Slc39a14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391470,540,916 - 70,588,873 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1470,540,918 - 70,588,874 (-)EnsemblGRCm39 Ensembl
GRCm381470,303,467 - 70,351,452 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1470,303,469 - 70,351,425 (-)EnsemblGRCm38mm10GRCm38
MGSCv371470,703,274 - 70,751,231 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361469,038,547 - 69,086,505 (-)NCBIMGSCv36mm8
Celera1467,844,935 - 67,892,707 (-)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1436.32NCBI
Slc39a14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81551,786,517 - 51,833,260 (-)NCBIGRCr8
mRatBN7.21545,376,806 - 45,423,549 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1545,376,917 - 45,423,524 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1549,494,780 - 49,541,394 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01550,606,267 - 50,652,883 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01547,465,592 - 47,512,197 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01551,982,872 - 52,029,841 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1551,982,982 - 52,029,816 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01555,707,497 - 55,752,631 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41550,703,198 - 50,749,644 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11550,721,996 - 50,738,831 (-)NCBI
Celera1545,056,455 - 45,103,098 (-)NCBICelera
Cytogenetic Map15p11NCBI
SLC39A14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2740,874,344 - 40,929,610 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1816,599,597 - 16,654,820 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0821,617,529 - 21,672,726 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1818,555,894 - 18,610,606 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl818,555,895 - 18,621,510 (+)Ensemblpanpan1.1panPan2
SLC39A14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12534,854,371 - 34,901,030 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2534,846,653 - 34,869,695 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2535,443,359 - 35,490,017 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02535,064,234 - 35,111,050 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2535,055,363 - 35,111,056 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12535,010,469 - 35,057,085 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02534,864,496 - 34,911,061 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02535,019,411 - 35,066,227 (-)NCBIUU_Cfam_GSD_1.0
Slc39a14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053647 - 9,308 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049390451 - 7,491 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC39A14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl146,639,206 - 6,687,924 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1146,639,485 - 6,687,929 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2147,073,522 - 7,120,393 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC39A14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1820,446,756 - 20,502,585 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605221,729,303 - 21,788,987 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc39a14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475817,912,827 - 17,953,294 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475817,911,889 - 17,954,870 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000018862   ⟹   ENSCLAP00000018679
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540345,827,942 - 45,867,309 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000018863   ⟹   ENSCLAP00000018680
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540345,828,247 - 45,867,309 (+)Ensembl
RefSeq Acc Id: XM_005373657   ⟹   XP_005373714
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540345,828,247 - 45,867,309 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013513817   ⟹   XP_013369271
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540345,828,250 - 45,867,309 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013513820   ⟹   XP_013369274
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540345,828,250 - 45,867,309 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013513823   ⟹   XP_013369277
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540345,828,250 - 45,867,309 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013513825   ⟹   XP_013369279
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540345,828,247 - 45,867,309 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013513828   ⟹   XP_013369282
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540345,828,336 - 45,867,309 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005373714   ⟸   XM_005373657
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VWU3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013369279   ⟸   XM_013513825
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013369277   ⟸   XM_013513823
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VPN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013369271   ⟸   XM_013513817
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VPN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013369274   ⟸   XM_013513820
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VPN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013369282   ⟸   XM_013513828
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VPN5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000018679   ⟸   ENSCLAT00000018862
Ensembl Acc Id: ENSCLAP00000018680   ⟸   ENSCLAT00000018863


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012809 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018862 ENTREZGENE
  ENSCLAT00000018862.1 UniProtKB/TrEMBL
  ENSCLAT00000018863 ENTREZGENE
  ENSCLAT00000018863.1 UniProtKB/TrEMBL
InterPro ZIP UniProtKB/TrEMBL
  ZIP_Transporter UniProtKB/TrEMBL
NCBI Gene Slc39a14 ENTREZGENE
PANTHER METAL CATION SYMPORTER ZIP14 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 39 UniProtKB/TrEMBL
Pfam Zip UniProtKB/TrEMBL
UniProt A0A8C2VPN5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VWU3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc39a14  solute carrier family 39 member 14    solute carrier family 39 (zinc transporter), member 14  Symbol and/or name change 5135510 APPROVED