Smim22 (small integral membrane protein 22) - Rat Genome Database

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Gene: Smim22 (small integral membrane protein 22) Chinchilla lanigera
Analyze
Symbol: Smim22
Name: small integral membrane protein 22
RGD ID: 8859914
Description: INVOLVED IN lipid droplet formation (ortholog); positive regulation of cell migration (ortholog); regulation of actin cytoskeleton organization (ortholog); ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); Kohlschutter-Tonz syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544212,700,461 - 12,701,283 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544212,700,461 - 12,701,283 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Smim22Chinchillaepilepsy  ISOSMIM22 (Homo sapiens)8554872ClinVar Annotator: match by term: EpilepsyClinVarPMID:28492532
Smim22ChinchillaIdiopathic Generalized Epilepsy  ISOSMIM22 (Homo sapiens)8554872ClinVar Annotator: match by term: Idiopathic generalized epilepsyClinVarPMID:28492532
Smim22ChinchillaKohlschutter-Tonz syndrome  ISOSMIM22 (Homo sapiens)8554872ClinVar Annotator: match by term: Amelocerebrohypohidrotic syndromeClinVarPMID:28492532
Smim22ChinchillaRubinstein-Taybi syndrome  ISOSMIM22 (Homo sapiens)8554872ClinVar Annotator: match by term: Rubinstein-Taybi syndromeClinVarPMID:12114483 more ...
Smim22Chinchillashort-rib thoracic dysplasia 9 with or without polydactyly  ISOSMIM22 (Homo sapiens)8554872ClinVar Annotator: match by term: Saldino-Mainzer syndromeClinVarPMID:28492532


Biological Process

  

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Smim22Chinchillaprotein binding enablesISOUniProtKB:P27824 more ...9068941 PMID:29765154UniProtPMID:29765154


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:30032202  



Smim22
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544212,700,461 - 12,701,283 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544212,700,461 - 12,701,283 (-)NCBIChiLan1.0ChiLan1.0
SMIM22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38164,788,397 - 4,796,491 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl164,788,397 - 4,796,491 (+)EnsemblGRCh38hg38GRCh38
GRCh37164,838,398 - 4,846,492 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36164,785,445 - 4,786,283 (+)NCBINCBI36Build 36hg18NCBI36
Celera165,047,168 - 5,055,052 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef164,804,628 - 4,812,690 (+)NCBIHuRef
CHM1_1164,839,242 - 4,847,338 (+)NCBICHM1_1
T2T-CHM13v2.0164,817,885 - 4,825,973 (+)NCBIT2T-CHM13v2.0
Smim22
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39164,825,152 - 4,826,173 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl164,825,152 - 4,826,173 (+)EnsemblGRCm39 Ensembl
GRCm38165,007,288 - 5,008,309 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl165,007,288 - 5,008,309 (+)EnsemblGRCm38mm10GRCm38
MGSCv37165,007,396 - 5,008,402 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36164,922,615 - 4,923,627 (+)NCBIMGSCv36mm8
Celera165,638,677 - 5,639,683 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map162.49NCBI
Smim22
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81011,079,019 - 11,080,804 (-)NCBIGRCr8
mRatBN7.21010,572,146 - 10,574,339 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1015,280,550 - 15,281,731 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01014,769,369 - 14,770,550 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01010,438,679 - 10,439,860 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01010,766,208 - 10,768,044 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1010,766,208 - 10,767,389 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0109,533,221 - 9,535,017 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41010,688,460 - 10,689,937 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera109,536,341 - 9,537,575 (-)NCBICelera
Cytogenetic Map10q12NCBI
SMIM22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2185,323,401 - 5,324,979 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1169,113,553 - 9,115,131 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0163,719,356 - 3,720,380 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1164,884,964 - 4,885,870 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl164,884,977 - 4,885,869 (+)Ensemblpanpan1.1panPan2
SMIM22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1636,624,080 - 36,625,631 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl636,624,992 - 36,625,505 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha638,016,333 - 38,022,481 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0636,827,053 - 36,833,200 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl636,827,965 - 36,828,478 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1636,621,097 - 36,627,183 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0636,513,993 - 36,520,072 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0636,916,208 - 36,922,354 (-)NCBIUU_Cfam_GSD_1.0
Smim22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344106,909,199 - 106,910,406 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365304,755,222 - 4,755,817 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365304,754,946 - 4,755,830 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMIM22
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl337,599,576 - 37,601,086 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1337,599,574 - 37,601,316 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2338,670,635 - 38,672,152 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SMIM22
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.154,465,215 - 4,466,550 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl54,465,603 - 4,466,738 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606826,192,962 - 26,194,293 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smim22
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248242,648,641 - 2,649,427 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248242,645,488 - 2,649,428 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.






Ensembl Acc Id: ENSCLAT00000019234   ⟹   ENSCLAP00000019049
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544212,700,461 - 12,701,283 (-)Ensembl
RefSeq Acc Id: XM_005391268   ⟹   XP_005391325
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544212,700,461 - 12,701,283 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005391269   ⟹   XP_005391326
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544212,700,465 - 12,701,283 (-)NCBI
Sequence:
Protein RefSeqs XP_005391325 (Get FASTA)   NCBI Sequence Viewer  
  XP_005391326 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019049
  ENSCLAP00000019049.1
RefSeq Acc Id: XP_005391325   ⟸   XM_005391268
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YS12 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005391326   ⟸   XM_005391269
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSCLAP00000019049   ⟸   ENSCLAT00000019234



1 to 10 of 10 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000013044 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019234 ENTREZGENE
  ENSCLAT00000019234.1 UniProtKB/TrEMBL
InterPro DUF4713 UniProtKB/TrEMBL
  SIM_Modulators UniProtKB/TrEMBL
NCBI Gene LOC102004013 ENTREZGENE
PANTHER CLCA DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  SMALL INTEGRAL MEMBRANE PROTEIN 22 UniProtKB/TrEMBL
Pfam DUF4713 UniProtKB/TrEMBL
UniProt A0A8C2YS12 ENTREZGENE, UniProtKB/TrEMBL
1 to 10 of 10 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Smim22  small integral membrane protein 22  LOC102004013  small integral membrane protein 5-like  Symbol and/or name change 5135510 APPROVED