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Gene: Scp2 (sterol carrier protein 2) Chinchilla lanigera

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Symbol:

Scp2

Name:

sterol carrier protein 2

RGD ID:

8854523

Description:

ENCODES a protein that exhibits acetyl-CoA C-acyltransferase activity (ortholog); acetyl-CoA C-myristoyltransferase activity (ortholog); cholesterol binding (ortholog); INVOLVED IN alpha-linolenic acid metabolic process (ortholog); bile acid metabolic process (ortholog); cellular response to cholesterol (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; congenital bile acid synthesis defect pathway; ASSOCIATED WITH dystonia (ortholog); Experimental Diabetes Mellitus (ortholog); leukodystrophy (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); mitochondrion (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	6,094,758 - 6,224,287 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	6,097,241 - 6,224,287 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scp2	Chinchilla	Experimental Diabetes Mellitus	treatment	ISO	RGD:3642	9068941		RGD	PMID:7628371\|REF_RGD_ID:9850252
Scp2	Chinchilla	Zellweger syndrome		ISO	RGD:733061	9068941		RGD	PMID:3555624\|REF_RGD_ID:13782196

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scp2	Chinchilla	leukodystrophy		ISO	RGD:733061	8554872	ClinVar Annotator: match by term: Leukodystrophy	ClinVar	PMID:25741868
Scp2	Chinchilla	Leukoencephalopathy with Dystonia and Motor Neuropathy		ISO	RGD:733061	8554872	ClinVar Annotator: match by term: SCP2-related condition \| ClinVar Annotator: match by term: Sterol carrier more ...	ClinVar	PMID:16199547\|PMID:16685654\|PMID:17576681\|PMID:25741868\|PMID:26497993\|PMID:28492532\|PMID:33098801\|PMID:35872528\|PMID:35996156\|PMID:9536098
Scp2	Chinchilla	sensorineural hearing loss		ISO	RGD:733061	8554872	ClinVar Annotator: match by term: Sensorineural hearing loss disorder	ClinVar	PMID:25741868\|PMID:28492532\|PMID:33713422

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scp2	Chinchilla	dystonia		ISO	RGD:733061	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:16685654
Scp2	Chinchilla	Leukoencephalopathies		ISO	RGD:733061	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:16685654
Scp2	Chinchilla	polyneuropathy		ISO	RGD:733061	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:16685654

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scp2	Chinchilla	Leukoencephalopathy with Dystonia and Motor Neuropathy		ISO	RGD:733061	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scp2	Chinchilla	alpha-linolenic acid metabolic process	involved_in	ISO	RGD:11273	9068941	PMID:11734571	MGI	PMID:11734571
Scp2	Chinchilla	bile acid metabolic process	involved_in	ISO	RGD:3642	9068941	PMID:9325339	UniProt	PMID:9325339\|REF_RGD_ID:21201257
Scp2	Chinchilla	cellular response to cholesterol		ISO	RGD:3642	9068941		RGD	PMID:7989577\|PMID:8847489\|REF_RGD_ID:9850161\|REF_RGD_ID:9850255
Scp2	Chinchilla	fatty acid beta-oxidation	involved_in	ISO	RGD:3642	9068941	PMID:9325339	UniProt	PMID:9325339\|REF_RGD_ID:21201257
Scp2	Chinchilla	fatty acid derivative biosynthetic process	involved_in	ISO	RGD:11273	9068941	PMID:11734571	MGI	PMID:11734571
Scp2	Chinchilla	inositol trisphosphate biosynthetic process	involved_in	ISO	RGD:733061	9068941	PMID:12641450	UniProt	PMID:12641450
Scp2	Chinchilla	intracellular cholesterol transport	involved_in	ISO	RGD:733061	9068941	PMID:7642518	UniProt	PMID:7642518
Scp2	Chinchilla	lipid hydroperoxide transport	involved_in	ISO	RGD:733061	9068941	PMID:15449949	UniProt	PMID:15449949
Scp2	Chinchilla	long-chain fatty acid biosynthetic process	involved_in	ISO	RGD:11273	9068941	PMID:11734571	MGI	PMID:11734571
Scp2	Chinchilla	phospholipid transport	involved_in	ISO	RGD:733061	9068941	PMID:12641450	UniProt	PMID:12641450
Scp2	Chinchilla	positive regulation of apoptotic process		ISO	RGD:3642	9068941		RGD	PMID:16772292\|REF_RGD_ID:9850270
Scp2	Chinchilla	positive regulation of cholesterol biosynthetic process		ISO	RGD:3642	9068941		RGD	PMID:2554812\|REF_RGD_ID:9850260
Scp2	Chinchilla	positive regulation of cholesterol import		ISO	RGD:3642	9068941		RGD	PMID:16772292\|REF_RGD_ID:9850270
Scp2	Chinchilla	positive regulation of intracellular cholesterol transport	involved_in	ISO	RGD:733061	9068941	PMID:15449949	UniProt	PMID:15449949
Scp2	Chinchilla	positive regulation of steroid biosynthetic process		ISO	RGD:3642	9068941		RGD	PMID:3030719\|REF_RGD_ID:9999179
Scp2	Chinchilla	positive regulation of steroid biosynthetic process	involved_in	ISO	RGD:3642	9068941	PMID:1703300	UniProt	PMID:1703300\|REF_RGD_ID:8554045
Scp2	Chinchilla	positive regulation of steroid metabolic process	involved_in	ISO	RGD:733061	9068941	PMID:1703300	UniProt	PMID:1703300
Scp2	Chinchilla	progesterone biosynthetic process	involved_in	ISO	RGD:733061	9068941	PMID:1703300	UniProt	PMID:1703300
Scp2	Chinchilla	protein localization to plasma membrane	involved_in	ISO	RGD:733061	9068941	PMID:12641450	UniProt	PMID:12641450
Scp2	Chinchilla	regulation of phospholipid biosynthetic process	involved_in	ISO	RGD:11273	9068941	PMID:11003606	UniProt	PMID:11003606
Scp2	Chinchilla	response to estradiol		ISO	RGD:3642	9068941		RGD	PMID:2474437\|REF_RGD_ID:9850268
Scp2	Chinchilla	response to luteinizing hormone		ISO	RGD:3642	9068941		RGD	PMID:2249635\|REF_RGD_ID:9850257
Scp2	Chinchilla	steroid biosynthetic process	involved_in	ISO	RGD:733061	9068941	PMID:1703300	UniProt	PMID:1703300
Scp2	Chinchilla	unsaturated fatty acid biosynthetic process	involved_in	ISO	RGD:11273	9068941	PMID:11734571	MGI	PMID:11734571

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scp2	Chinchilla	cytoplasm	located_in	ISO	RGD:11273	9068941	PMID:26901662	UniProt	PMID:26901662
Scp2	Chinchilla	endoplasmic reticulum	located_in	ISO	RGD:11273	9068941	PMID:11003606	UniProt	PMID:11003606
Scp2	Chinchilla	mitochondrion	located_in	ISO	RGD:11273	9068941	PMID:11003606, PMID:26901662	UniProt	PMID:11003606\|PMID:26901662
Scp2	Chinchilla	nucleoplasm	located_in	ISO	RGD:733061	9068941		HPA	GO_REF:0000052
Scp2	Chinchilla	peroxisomal matrix		ISO	RGD:3642	9068941		RGD	PMID:8063752\|REF_RGD_ID:9850162
Scp2	Chinchilla	peroxisomal matrix	located_in	ISO	RGD:3642	9068941	PMID:8063752	UniProt	PMID:8063752\|REF_RGD_ID:9850162
Scp2	Chinchilla	peroxisome	located_in	ISO	RGD:3642	9068941	PMID:9325339	UniProt	PMID:9325339\|REF_RGD_ID:21201257
Scp2	Chinchilla	peroxisome	located_in	ISO	RGD:733061	9068941	PMID:1347505, PMID:21375735	HPA	GO_REF:0000052\|PMID:1347505\|PMID:21375735
Scp2	Chinchilla	peroxisome	located_in	ISO	RGD:11273	9068941	PMID:11003606, PMID:26901662	UniProt	PMID:11003606\|PMID:26901662
Scp2	Chinchilla	peroxisome	located_in	ISO	RGD:3642	9068941	PMID:14561759	HGNC-UCL	PMID:14561759\|REF_RGD_ID:1580664
Scp2	Chinchilla	protein-containing complex	part_of	ISO	RGD:733061	9068941	PMID:19584060	UniProt	PMID:19584060

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scp2	Chinchilla	acetyl-CoA C-acyltransferase activity		ISO	RGD:3642	9068941		RGD	PMID:8063752\|REF_RGD_ID:9850162
Scp2	Chinchilla	acetyl-CoA C-acyltransferase activity	enables	ISO	RGD:3642	9068941	PMID:9245689	UniProt	PMID:9245689\|REF_RGD_ID:151356613
Scp2	Chinchilla	acetyl-CoA C-acyltransferase activity	enables	ISO	RGD:3642	9068941	PMID:9325339	UniProt	PMID:9325339\|REF_RGD_ID:21201257
Scp2	Chinchilla	acetyl-CoA C-acyltransferase activity	enables	ISO	RGD:3642	9068941	PMID:8063752	UniProt	PMID:8063752\|REF_RGD_ID:9850162
Scp2	Chinchilla	acetyl-CoA C-myristoyltransferase activity	enables	ISO	RGD:3642	9068941	PMID:9325339	UniProt	PMID:9325339\|REF_RGD_ID:21201257
Scp2	Chinchilla	cholesterol binding	enables	ISO	RGD:733061	9068941	PMID:18465878	UniProt	PMID:18465878
Scp2	Chinchilla	cholesterol transfer activity		ISO	RGD:3642	9068941		RGD	PMID:8063752\|REF_RGD_ID:9850162
Scp2	Chinchilla	cholesterol transfer activity	enables	ISO	RGD:3642	9068941	PMID:8063752	UniProt	PMID:8063752\|REF_RGD_ID:9850162
Scp2	Chinchilla	cholesterol transfer activity	enables	ISO	RGD:733061	9068941	PMID:7642518	UniProt	PMID:7642518
Scp2	Chinchilla	fatty-acyl-CoA binding	enables	ISO	RGD:733061	9068941	PMID:18465878	UniProt	PMID:18465878
Scp2	Chinchilla	identical protein binding		ISO	RGD:3642	9068941	homodimerization	RGD	PMID:10733876\|REF_RGD_ID:9850264
Scp2	Chinchilla	long-chain fatty acyl-CoA binding	enables	ISO	RGD:733061	9068941	PMID:17418802	UniProt	PMID:17418802
Scp2	Chinchilla	oleic acid binding	enables	ISO	RGD:733061	9068941	PMID:18465878	UniProt	PMID:18465878
Scp2	Chinchilla	phosphatidylcholine transfer activity		ISO	RGD:3642	9068941		RGD	PMID:8063752\|REF_RGD_ID:9850162
Scp2	Chinchilla	phosphatidylcholine transfer activity	enables	ISO	RGD:3642	9068941	PMID:8063752	UniProt	PMID:8063752\|REF_RGD_ID:9850162
Scp2	Chinchilla	phosphatidylethanolamine transfer activity		ISO	RGD:3642	9068941		RGD	PMID:8606365\|REF_RGD_ID:9854645
Scp2	Chinchilla	phosphatidylinositol transfer activity	enables	ISO	RGD:733061	9068941	PMID:12641450	UniProt	PMID:12641450
Scp2	Chinchilla	propionyl-CoA C2-trimethyltridecanoyltransferase activity	enables	ISO	RGD:733061	9068941	PMID:11734571, PMID:16685654, PMID:9245689	Reactome	PMID:11734571\|PMID:16685654\|PMID:9245689
Scp2	Chinchilla	propionyl-CoA C2-trimethyltridecanoyltransferase activity	enables	ISO	RGD:3642	9068941	PMID:9245689	UniProt	PMID:9245689\|REF_RGD_ID:151356613
Scp2	Chinchilla	protein binding	enables	ISO	UniProtKB:P50542	9068941	PMID:19584060	UniProt	PMID:19584060
Scp2	Chinchilla	protein binding	enables	ISO	PR:Q9D828	9068941	PMID:11591653	MGI	PMID:11591653
Scp2	Chinchilla	protein binding	enables	ISO	UniProtKB:P49817\|UniProtKB:Q03135	9068941	PMID:15182174	IntAct	PMID:15182174
Scp2	Chinchilla	protein binding	enables	ISO	UniProtKB:O00291\|UniProtKB:O75400-2\|UniProtKB:P13473-2\|UniProtKB:P55212\|UniProtKB:P62826	9068941	PMID:32814053	IntAct	PMID:32814053
Scp2	Chinchilla	protein binding	enables	ISO	UniProtKB:Q15645	9068941	PMID:21516116, PMID:25416956	IntAct	PMID:21516116\|PMID:25416956
Scp2	Chinchilla	protein-containing complex binding		ISO	RGD:3642	9068941	heterodimerization	RGD	PMID:10733876\|REF_RGD_ID:9850264
Scp2	Chinchilla	signaling receptor binding	enables	ISO	UniProtKB:P50542	9068941	PMID:21375735	UniProt	PMID:21375735

Imported Annotations - SMPDB

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scp2	Chinchilla	bile acid biosynthetic pathway		ISO	RGD:733061	9068941		SMPDB	SMP:00035
Scp2	Chinchilla	cerebrotendinous xanthomatosis pathway		ISO	RGD:733061	9068941		SMPDB	SMP:00315
Scp2	Chinchilla	congenital bile acid synthesis defect pathway		ISO	RGD:733061	9068941		SMPDB	SMP:00314\|SMP:00318
Scp2	Chinchilla	familial hypercholanemia pathway		ISO	RGD:733061	9068941		SMPDB	SMP:00317
Scp2	Chinchilla	Zellweger syndrome pathway		ISO	RGD:733061	9068941		SMPDB	SMP:00316

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

PMID:22301074	PMID:30032202

Scp2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	6,094,758 - 6,224,287 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	6,097,241 - 6,224,287 (-)	NCBI	ChiLan1.0	ChiLan1.0

SCP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	52,927,276 - 53,051,698 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	52,927,276 - 53,051,698 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	53,392,948 - 53,517,370 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	53,165,536 - 53,289,870 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	53,104,968 - 53,229,303	NCBI
Celera	1	51,680,710 - 51,805,264 (+)	NCBI		Celera
Cytogenetic Map	1	p32.3	NCBI
HuRef	1	51,508,548 - 51,632,772 (+)	NCBI		HuRef
CHM1_1	1	53,510,076 - 53,634,447 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	52,808,787 - 52,933,201 (+)	NCBI		T2T-CHM13v2.0

Scp2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	107,901,027 - 108,002,168 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	107,901,036 - 108,002,195 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	108,043,830 - 108,144,971 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	108,043,839 - 108,144,998 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	107,716,444 - 107,791,104 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	107,541,771 - 107,616,433 (-)	NCBI		MGSCv36	mm8
Celera	4	106,393,462 - 106,469,326 (-)	NCBI		Celera
Cytogenetic Map	4	C7	NCBI
cM Map	4	50.2	NCBI

Scp2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	128,035,714 - 128,110,015 (-)	NCBI		GRCr8
mRatBN7.2	5	122,806,949 - 122,881,259 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	122,776,549 - 122,881,287 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	125,426,714 - 125,500,816 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	127,149,765 - 127,223,865 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	127,201,077 - 127,275,181 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	127,647,934 - 127,735,703 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	127,620,274 - 127,735,739 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	131,495,401 - 131,584,291 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	129,152,836 - 129,230,401 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	129,158,061 - 129,235,617 (-)	NCBI
Celera	5	121,551,168 - 121,624,570 (-)	NCBI		Celera
Cytogenetic Map	5	q34	NCBI

SCP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	173,786,509 - 173,915,204 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	172,927,259 - 173,057,399 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	52,195,491 - 52,324,227 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	53,797,256 - 53,924,939 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	53,797,254 - 53,924,939 (+)	Ensembl	panpan1.1		panPan2

SCP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	55,860,053 - 55,971,657 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	55,860,549 - 55,964,014 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	55,925,974 - 56,029,762 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	56,049,398 - 56,153,726 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	56,049,398 - 56,153,708 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	56,041,491 - 56,145,154 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	55,932,897 - 56,036,796 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	56,322,159 - 56,425,975 (-)	NCBI		UU_Cfam_GSD_1.0

Scp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	67,305,291 - 67,411,787 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936522	8,005,442 - 8,110,889 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936522	8,004,503 - 8,110,995 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SCP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	6	159,191,045 - 159,314,985 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	147,007,365 - 147,077,789 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SCP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	79,868,825 - 79,993,906 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	79,865,332 - 79,993,835 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	37,285,653 - 37,412,244 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Scp2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624859	107,258 - 252,756 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624859	106,405 - 252,870 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005398565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005398566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01050018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01050019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01008435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000007930 ⟹ ENSCLAP00000007810

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955464	6,094,758 - 6,224,287 (-)	Ensembl

Ensembl Acc Id:

ENSCLAT00000007931 ⟹ ENSCLAP00000007811

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955464	6,094,758 - 6,135,639 (-)	Ensembl

Ensembl Acc Id:

ENSCLAT00000007932 ⟹ ENSCLAP00000007812

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955464	6,162,122 - 6,224,163 (-)	Ensembl

Ensembl Acc Id:

ENSCLAT00000007933 ⟹ ENSCLAP00000007813

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955464	6,197,942 - 6,212,538 (-)	Ensembl

RefSeq Acc Id:

XM_005398565 ⟹ XP_005398622

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955464	6,097,241 - 6,224,287 (-)	NCBI

Sequence:

show sequence

CCGCCGCGCCCCGCCCCGCCGCCCCTAGCCAAGGCCTCGTTCCTGTCCGTGCGCACAGCGACCCCGGCGTCAGTCGGCGGGATCCGGGTCTCCTGCGGTTCGCTCTGTCCCGCGCTGCCGAGCCATGC
TTTCTTCCGAGTGCAAGCCTCCCGCCCTGCGCCGGGTGTTTGTGGTGGGGGTTGGCATGACCAAGTTCGTGAAGCCTGGAGGTGCGAATTCAAGGGACTACCCTGACTTGGCAAAAGAAGCAGGTCAG
AAGGCTTTAGCAGACGCTCAGATCCCTTACTCAGCAGTGGAGCAGGCATGTGTCGGCTATGTTTATGGTGAGTCTACTTCTGGGCAGAGGGCTATCTATCACAGTCTGGGACTGACTGGAATTCCTGT
AATCAATGTCAACAACAACTGCTCTACTGGTTCTACTGCTTTGTTTATGGCCCGGCAGCTGATTCAGGGTGGTTTGGCAAATTGTACTTTGGCTCTGGGGTTTGAGAAGATGGAGAAGGGATCCCTTC
AACTAAAGTTTTCAGATAGGACCAATCCAATAGATAAACATCTTGATGTCTTAATCAATAAGTATGGATTGTCTGCCCACCCAGTTGCTCCTCAGATATTTGGGTATGCCGGAAAAGAGCATATGGAA
AAATACGGAACAAAAATTGAACACTTTGCAAAAATTGGATGGAAAAATCATAAGCACTCAATTAATAACCCGTATTCCCAGTTCCAAGAAGAGTACAGTTTACATGAAATAATGGCATCTCGAAGGAT
TTTTGATTATTTGACTGTCTTACAATGTTGCCCTACTTCAGATGGTGCTGCAGCAGCAGTTCTGGCTAGTGAAGAATTTGTACGGAAGTGTGGCCTGGAATCCAAAGCTGTGGAAATTTTGGCACAAG
AGATGGTAACCGATTTGCCAAGCACATTTGAAGAAAAAAGTGTTATTAAAATGGCTGGCTATGATATGACCAAGGAAGCTGCCAGGAGATGCTATGAGAAGTCTGGCCTGGGACCAAGTGATATTGAT
GTAATAGAACTTCATGACTGCTTTTCTGCAAATGAACTCCTTACTTATGAAGCCCTCGGACTCTGTCCAGAAGGACAGGGTGGAGCCCTGATTGATAGAGGAGATAATACTTATGGAGGAAAGTGGGT
CATAAATCCTAGTGGTGGATTGCTTTCCAAGGGACACCCACTAGGAGCTACAGGTCTGGCTCAGTGTGCCGAACTCTGCTGGCAGCTGCGGGGGGAAGCCGGAAAGAGGCAAGTTCCCGGTGCGAAGG
TGGCTCTGCAGCACAACCTAGGCCTCGGTGGAGCTGCCGTGGTGACTGTCTACAAGATGGGTTTTCCGGAAGCCGCCAGTTCTTTCAGAGTGAATCAAATCGAGGCTGCTCCGACCAGCTCTGCAGGG
GACGGATTTAAGGCCAACCTCGTCTTCAAGGAGATTGAGAAGAAGCTTGAAGAGGAAGGTGAACAGTTTGTGAAGAAAATCGGGGGTATTTTTGCCTTCAAGGTGAAGGATGGCCCTGGGGGTAAAGA
AGCCACCTGGGTTGTGGATGTGAAGAACGGCAAAGGATCGGTGCTTCCCAACTCAGATAAGAAGGCTGACTGCACCATCACCATGGCTGACTCAGACTTGCTGGCCCTGATGACTGGAAAAATGAACC
CTCAGTCGGCCTTCTTTCAAGGTAAATTGAAAATCACTGGCAACATGGGTATGGCGATGAAGTTACAGAATCTTCAGCTTCAGCCAGGCAAAGCCAAGCTGTGAAGAACTAACACCCTTTGGCAACTT
TGGAAAATCAAGATGAGACATAGATCCATATATTTCCTTGTCAGAACTTAGACTGAAACTACACGTTGGCAAATAATGAGATGGCTTTGTTGTTCCATGGATGTGACCAGTCGTGTTTTTCCTGGCCT
CTGCATGCAGAGCCTGGTGGTATACTACTGCTATGCGGAATTGCATATAAATGTGCATGACAGAGTTAATATGGTAATTATGGTTTGGGGTAAATTTGAGTTTCAGAATAAAAGTAGGAACAGTAAAA
TCTAAAAACTGTGTAAACAAAAGCTCTTGTTTTGCTTAGAAGTATATTTAAGGGTTATCCTGTGGCAGATGGAATTTAAAGAGTTTTCCTTGGGAGAACTGGGGAAGAGGCAATACCAGTAGCTGGCC
AGCAATTAGTGTCATGCACTTGATGACCTTCACTGATTTCTCACTAACACTTCTTAAAATTCTGTACTGGAATACAAATCTTTAAACTTTTGCATTTTATGCCATCACGAAGAAAATGTTCTCCCCAA
ATAAAATAAACATGATCAAAGCTTAGGGGAAACATTTAGATGAACACAGGCCTATTTTTAAAGTAAAATTATTTTTTAAATGATGTTCCTTCTTGAAAAATCAGGGTATTAGAGTCATAAAATGCTAT
TGCTGAGAGTAATTGAACAAATAAAGTTCACTTTCAGATGCACAGTTCTCAGACTATAATCTCATTAATTTATGTTTATAAAGTTTTTAGTCTTGGTTTTTTCCTGTTTAGCTTAACTAATTACCTTC
ATTTATCTTTCTTCCTGTTTTTGTTATTTTCTAATTCTGTTATTTCCTATAACTCCTATATGGGATAAAAACAATGCTTTTGGAAGAATATTCAATAGAAAATTACAATACCTCTCTCTGA

hide sequence

RefSeq Acc Id:

XM_005398566 ⟹ XP_005398623

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955464	6,097,241 - 6,135,639 (-)	NCBI

Sequence:

show sequence

GGTGAGCAAGGCTTCTCTTCCCCCGCAGGCTGGGGGTGACACTGGTGAGCAAATGTGGAGTCCCCACAGCTGAAGTGAAGCCATGGACTCACAGGACTCCTGCTCTGCAGGTCTGGCTCAGTGTGCCG
AACTCTGCTGGCAGCTGCGGGGGGAAGCCGGAAAGAGGCAAGTTCCCGGTGCGAAGGTGGCTCTGCAGCACAACCTAGGCCTCGGTGGAGCTGCCGTGGTGACTGTCTACAAGATGGGTTTTCCGGAA
GCCGCCAGTTCTTTCAGAGTGAATCAAATCGAGGCTGCTCCGACCAGCTCTGCAGGGGACGGATTTAAGGCCAACCTCGTCTTCAAGGAGATTGAGAAGAAGCTTGAAGAGGAAGGTGAACAGTTTGT
GAAGAAAATCGGGGGTATTTTTGCCTTCAAGGTGAAGGATGGCCCTGGGGGTAAAGAAGCCACCTGGGTTGTGGATGTGAAGAACGGCAAAGGATCGGTGCTTCCCAACTCAGATAAGAAGGCTGACT
GCACCATCACCATGGCTGACTCAGACTTGCTGGCCCTGATGACTGGAAAAATGAACCCTCAGTCGGCCTTCTTTCAAGGTAAATTGAAAATCACTGGCAACATGGGTATGGCGATGAAGTTACAGAAT
CTTCAGCTTCAGCCAGGCAAAGCCAAGCTGTGAAGAACTAACACCCTTTGGCAACTTTGGAAAATCAAGATGAGACATAGATCCATATATTTCCTTGTCAGAACTTAGACTGAAACTACACGTTGGCA
AATAATGAGATGGCTTTGTTGTTCCATGGATGTGACCAGTCGTGTTTTTCCTGGCCTCTGCATGCAGAGCCTGGTGGTATACTACTGCTATGCGGAATTGCATATAAATGTGCATGACAGAGTTAATA
TGGTAATTATGGTTTGGGGTAAATTTGAGTTTCAGAATAAAAGTAGGAACAGTAAAATCTAAAAACTGTGTAAACAAAAGCTCTTGTTTTGCTTAGAAGTATATTTAAGGGTTATCCTGTGGCAGATG
GAATTTAAAGAGTTTTCCTTGGGAGAACTGGGGAAGAGGCAATACCAGTAGCTGGCCAGCAATTAGTGTCATGCACTTGATGACCTTCACTGATTTCTCACTAACACTTCTTAAAATTCTGTACTGGA
ATACAAATCTTTAAACTTTTGCATTTTATGCCATCACGAAGAAAATGTTCTCCCCAAATAAAATAAACATGATCAAAGCTTAGGGGAAACATTTAGATGAACACAGGCCTATTTTTAAAGTAAAATTA
TTTTTTAAATGATGTTCCTTCTTGAAAAATCAGGGTATTAGAGTCATAAAATGCTATTGCTGAGAGTAATTGAACAAATAAAGTTCACTTTCAGATGCACAGTTCTCAGACTATAATCTCATTAATTT
ATGTTTATAAAGTTTTTAGTCTTGGTTTTTTCCTGTTTAGCTTAACTAATTACCTTCATTTATCTTTCTTCCTGTTTTTGTTATTTTCTAATTCTGTTATTTCCTATAACTCCTATATGGGATAAAAA
CAATGCTTTTGGAAGAATATTCAATAGAAAATTACAATACCTCTCTCTGA

hide sequence


Protein RefSeqs	XP_005398622	(Get FASTA)	NCBI Sequence Viewer
	XP_005398623	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000007810
	ENSCLAP00000007810.1
	ENSCLAP00000007811.1
	ENSCLAP00000007812.1
	ENSCLAP00000007813.1

RefSeq Acc Id:	XP_005398622 ⟸ XM_005398565
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2UZI3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLSSECKPPALRRVFVVGVGMTKFVKPGGANSRDYPDLAKEAGQKALADAQIPYSAVEQACVGYVYGESTSGQRAIYHSLGLTGIPVINVNNNCSTGSTALFMARQLIQGGLANCTLALGFEKMEKGS LQLKFSDRTNPIDKHLDVLINKYGLSAHPVAPQIFGYAGKEHMEKYGTKIEHFAKIGWKNHKHSINNPYSQFQEEYSLHEIMASRRIFDYLTVLQCCPTSDGAAAAVLASEEFVRKCGLESKAVEILA QEMVTDLPSTFEEKSVIKMAGYDMTKEAARRCYEKSGLGPSDIDVIELHDCFSANELLTYEALGLCPEGQGGALIDRGDNTYGGKWVINPSGGLLSKGHPLGATGLAQCAELCWQLRGEAGKRQVPGA KVALQHNLGLGGAAVVTVYKMGFPEAASSFRVNQIEAAPTSSAGDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDLLALMTGKM NPQSAFFQGKLKITGNMGMAMKLQNLQLQPGKAKL hide sequence

RefSeq Acc Id:	XP_005398623 ⟸ XM_005398566
- Peptide Label:	isoform X2
- Sequence:	show sequence MDSQDSCSAGLAQCAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTVYKMGFPEAASSFR VNQIEAAPTSSAGDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDLLALMTGKMNPQSAFFQGKLKITGNMGMAMKLQNLQLQPG KAKL hide sequence

Ensembl Acc Id:

ENSCLAP00000007810 ⟸ ENSCLAT00000007930

Ensembl Acc Id:

ENSCLAP00000007811 ⟸ ENSCLAT00000007931

Ensembl Acc Id:

ENSCLAP00000007812 ⟸ ENSCLAT00000007932

Protein Domains

SCP2 Thiolase C-terminal Thiolase N-terminal

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000005478	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000007930	ENTREZGENE
	ENSCLAT00000007930.1	UniProtKB/TrEMBL
	ENSCLAT00000007931.1	UniProtKB/TrEMBL
	ENSCLAT00000007932.1	UniProtKB/TrEMBL
	ENSCLAT00000007933.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1050.10	UniProtKB/TrEMBL
	3.40.47.10	UniProtKB/TrEMBL
InterPro	SCP2_sterol-bd_dom	UniProtKB/TrEMBL
	SCP2_sterol-bd_dom_sf	UniProtKB/TrEMBL
	Thiolase-like	UniProtKB/TrEMBL
	Thiolase_acyl_enz_int_AS	UniProtKB/TrEMBL
	Thiolase_C_2	UniProtKB/TrEMBL
	Thiolase_CS	UniProtKB/TrEMBL
	Thiolase_N	UniProtKB/TrEMBL
NCBI Gene	Scp2	ENTREZGENE
PANTHER	ACETYL-COA C-ACETYLTRANSFERASE	UniProtKB/TrEMBL
	NON-SPECIFIC LIPID-TRANSFER PROTEIN-LIKE 2	UniProtKB/TrEMBL
	SCP2 STEROL-BINDING DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	STEROL CARRIER PROTEIN 2 SCP-2 FAMILY PROTEIN	UniProtKB/TrEMBL
Pfam	SCP2	UniProtKB/TrEMBL
	Thiolase_C_1	UniProtKB/TrEMBL
	Thiolase_N	UniProtKB/TrEMBL
PROSITE	THIOLASE_1	UniProtKB/TrEMBL
	THIOLASE_2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53901	UniProtKB/TrEMBL
	SSF55718	UniProtKB/TrEMBL
UniProt	A0A8C2UZI3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2UZT2_CHILA	UniProtKB/TrEMBL
	A0A8C2YLN8_CHILA	UniProtKB/TrEMBL
	A0A8C2YLN9_CHILA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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