Rcc1 (regulator of chromosome condensation 1)

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Gene: Rcc1 (regulator of chromosome condensation 1) Chinchilla lanigera

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Symbol:

Rcc1

Name:

regulator of chromosome condensation 1

RGD ID:

8839057

Description:

ENCODES a protein that exhibits chromatin binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); histone binding (ortholog); INVOLVED IN chromosome segregation (ortholog); G1/S transition of mitotic cell cycle (ortholog); mitotic spindle organization (ortholog); FOUND IN chromatin (ortholog); condensed nuclear chromosome (ortholog); cytoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

regulator of chromosome condensation

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	7,612,784 - 7,643,275 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	7,612,784 - 7,643,275 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromosome segregation (ISO)

G1/S transition of mitotic cell cycle (ISO)

mitotic spindle organization (ISO)

regulation of mitotic nuclear division (ISO)

spindle assembly (ISO)

Cellular Component

chromatin (ISO)

condensed nuclear chromosome (ISO)

cytoplasm (ISO)

nucleoplasm (ISO)

nucleus (ISO)

protein-containing complex (ISO)

Molecular Function

chromatin binding (ISO)

guanyl-nucleotide exchange factor activity (ISO)

histone binding (ISO)

nucleosomal DNA binding (ISO)

nucleosome binding (ISO)

protein binding (ISO)

protein heterodimerization activity (ISO)

small GTPase binding (ISO)

sulfate binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Rcc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	7,612,784 - 7,643,275 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	7,612,784 - 7,643,275 (+)	NCBI	ChiLan1.0	ChiLan1.0

RCC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	28,506,043 - 28,538,989 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	28,505,943 - 28,539,300 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	28,832,555 - 28,865,501 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	28,717,332 - 28,738,194 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	28,653,183 - 28,686,118	NCBI
Celera	1	27,228,232 - 27,261,474 (+)	NCBI		Celera
Cytogenetic Map	1	p35.3	NCBI
HuRef	1	27,086,264 - 27,119,463 (+)	NCBI		HuRef
CHM1_1	1	28,947,946 - 28,981,201 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	28,347,999 - 28,380,949 (+)	NCBI		T2T-CHM13v2.0

Rcc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	132,059,230 - 132,073,061 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	132,059,230 - 132,080,916 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	132,331,919 - 132,345,750 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	132,331,919 - 132,353,605 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	131,887,838 - 131,901,577 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	131,603,999 - 131,617,738 (-)	NCBI		MGSCv36	mm8
Celera	4	130,492,831 - 130,506,571 (-)	NCBI		Celera
Cytogenetic Map	4	D2.3	NCBI
cM Map	4	65.2	NCBI

Rcc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	149,810,037 - 149,828,475 (-)	NCBI		GRCr8
mRatBN7.2	5	144,526,025 - 144,544,445 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	144,526,025 - 144,544,577 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	147,226,563 - 147,244,220 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	148,996,458 - 149,014,116 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	148,984,701 - 149,002,345 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	150,508,840 - 150,531,062 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	150,509,040 - 150,525,254 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	154,176,026 - 154,193,188 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	5	142,957,255 - 142,974,902 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

RCC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	198,307,052 - 198,329,284 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	197,426,225 - 197,448,484 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	27,784,488 - 27,806,728 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	28,819,422 - 28,841,266 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	28,820,815 - 28,841,773 (+)	Ensembl	panpan1.1		panPan2

RCC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	71,948,159 - 71,972,902 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	71,948,165 - 71,964,353 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	68,524,663 - 68,540,842 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	72,507,102 - 72,531,854 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	72,507,108 - 72,530,338 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	69,335,321 - 69,351,510 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	70,343,443 - 70,359,626 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	71,341,326 - 71,357,632 (-)	NCBI		UU_Cfam_GSD_1.0

Rcc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	46,804,062 - 46,822,132 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	12,635,175 - 12,647,231 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	12,635,175 - 12,646,907 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RCC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	85,546,024 - 85,565,866 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	85,540,766 - 85,565,869 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	79,351,068 - 79,378,340 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RCC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	104,256,895 - 104,279,948 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	104,257,877 - 104,278,458 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	12,221,461 - 12,246,700 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rcc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	12,326,738 - 12,362,213 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	12,316,976 - 12,360,673 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005394955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005394956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013519490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01044178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01044179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01004865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000011890 ⟹ ENSCLAP00000011752

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955452	7,612,784 - 7,643,275 (+)	Ensembl

RefSeq Acc Id:

XM_005394955 ⟹ XP_005395012

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955452	7,612,784 - 7,643,275 (+)	NCBI

Sequence:

show sequence

CAGAAGGTGAAAGCTCTGAGGATGGGGAAATGGCAAGGCACCACCTGGAAGGACACGAAGATGC
CACCCAAGCGTGTAGCTAAGAGAACATCACCCCCAGAAGATGCTGTCCCCAAAAGCAAGAAAGT
GAAAGACTCTCGTAACCAAGCAGTGAAGCCCACTGCCTCCTGCAGTGGTCCCAGCACCCATTCC
TGCCAAGTCTCACACAGGTCTCACAGAACAGCAGCAGGCGTGGTGCTGACGCTGGGCCAGGGCG
ACGTGGGCCAGCTGGGGCTGGGGGAGAGTGTGATGGAGAGGAAGAGGCCGGCCCTCGTGCCCAT
CCCGGAGGAGGTGGTTCAGGCCGAGGCGGGCGGCATGCACACCGTGTGTCTCAGCAAGAGTGGC
CAGGTCTACTCCTTTGGCTGCAACGATGAAGGTGCCCTGGGAAGGGACACATCAGTGGAAGGCT
CAGAAACAGTCCCTGGGAAAGTGGAACTGCAGGAGAAGGTGGTACAGGTGTCAGCAGGAGACAG
TCACACAGCAGCCCTCACCGAGGATGGCCGGGTCTTCCTCTGGGGCTCCTTTCGGGACAATAAT
GGTGTGATTGGGCTGTTGGAGCCCATGAAGAAGAGTATGGTGCCCTTGCAAGTGGAGCTGGATG
TGACCGTGGTGAAGGTAGCCTCAGGAAATGACCACTTGGTGATGCTGACAGTTGATGGTGACCT
CTACACGTTGGGTTGTGGGGAGCAGGGCCAGCTGGGGCGTGTACCTGAGTTATTTGCCAACCGT
GGTGGCCGGAAGGGCCTTGAACGACTCCTTGTCCCCAAGTGTGTGATGCTGAAATCCAGGGGGA
GCCGGGGCTATGTGAGGTTCCAGGATGCCTTCTGTGGTGCCTATTTCACTTTCGCCATCTCCCA
CGAGGGCCACGTATACGGCTTTGGCCTTTCCAACTACCATCAGCTTGGAACACCAGGCACAGAA
TCATGCTTCGTACCCCAGAACTTGACGTCCTTCAAGAATTCCACCAAGTCCTGGGTGGGCTTCT
CTGGTGGCCAGCACCATACGGTCTGCATGGACTCAGAAGGAAAAGCGTACAGCCTGGGCCGGGC
TGAGTATGGGCGGCTGGGCCTCGGCGAGGGTGCAGAGGAGAAGAGCATACCCACCCTCATCTCC
AGGCTGCCCTGCGTCTCCTCGGTGGCCTGCGGGGCCTCTGTGGGGTATGCTGTGACCAAGGATG
GCCGTGTTTTTGCCTGGGGCATGGGCACCAACTACCAGCTGGGCACAGGGCAGGACGACGACGC
CTGGAGTCCTGTGGAGATGACCGGCAAACAGCTGGAGAACCGTGTGGTCTTATCTGTGTCCAGC
GGGGGCCAGCACACAGTCTTACTGGTCAAGGACAAGGAACAGAGCTGATGAAGCCCGCGAGGGC
CTGGCCCCCACCTTCCCTCACAGCACAGGGAAGCAGAGACGGCCTCAGACCCCAGCAGCCTCTC
CCCAGCCTGTCCTGAACACTGTGTCATCTCCTGCCTTTTTCCCATCAACAGAGCAGAATCCTTC
TCCTCTTTTTCGTCCTCCTTTCTGGAATCATCCTGGCACCTGCAGGATGAAGCGGGGAGCGGAG
GGGCTGTCAGAAGGAACGTTGCTCGCCCTCACCGGAGACCTCTGGTTAGACGTTGTACCCCACT
TCTCTACCTCTCCCATCCTGGCTGGCTCTGACTTTGCCTTCCATAATACCAGAATGCCCTCCCT
GGGGGCTTGGTGCCTGCGGTCTGAGAAGTTGGGGCTCTGTCAGGCCCCACTCTAGTTACGTGCC
ACTCTTCCTGTCCTAAGAGTCCGCGGGCAGTCATCAAGCCCAGCTGTCATGGACCCAGGCCTGG
GACAGCTGGAGAAGGGGTAGGGCTACAGAACCGTGGGCAACCGCAAGCCAAATATTTGGCTCTG
AACAGGTGTCCATAGGGCAAAAGACTGATTCACTTGATGAAGGAAAAAGCCAACTACTGTAGCT
GTTCTCCCGGGAGCACAAAGCATAGTCTTTGCCTGTGGGGTGTCACATGTATAGTCCCCATCCA
CTGGGCCTCACCTGCAGCCAAGGACCCCGGAGCCCCACTGGGCTCACAGGGCAGGGCAGGATGT
GGGCAGAAAGAGGATGGAGGTTTTATACACAAAGGTACAGCAATATTAAGAGGCAAGAGGGGAG
GAGGCTGGCCCCAAGAATCTGTACAGTGGCTGAGAAAATAGTTTTAATTTTTTTAAATTGTAAA
ATATTTTGGAGGGGAGAGTAAAACCTTTTAACACTTTGAATAAAATTAGAGTTTTATAAAATAG
GCCACCTATTTTTCTACACACTCCCTGTCTTTCCAAGGCAGCATCCTACCACGTGCCAAGCGTT
GTCGGGAAGGGCAGGGTGAGCCCATGCCCCTAAACCTGGTGTCCCCTGCAGCTTGAAGCCTGTC
CCCTGTGGGTGCCCCCAAGGCTCTTCAAATCCATCAAAAAGGAGAAAGAAGTTTGAATGTTTAT
GCTTCAGGAACCACTGGATTAAAAAAAAAAAATGGTGCAGTAA

hide sequence

RefSeq Acc Id:

XM_005394956 ⟹ XP_005395013

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955452	7,612,784 - 7,643,275 (+)	NCBI

Sequence:

show sequence

CAGAAGGTGAAAGCTCTGAGGATGGGGAAATGGCAAGGCACCACCTGGAAGGACACGAAGATGC
CACCCAAGCGTGTAGCTAAGAGAACATCACCCCCAGAAGATGCTGTCCCCAAAAGCAAGAAAGT
GAAAGTCTCACACAGGTCTCACAGAACAGCAGCAGGCGTGGTGCTGACGCTGGGCCAGGGCGAC
GTGGGCCAGCTGGGGCTGGGGGAGAGTGTGATGGAGAGGAAGAGGCCGGCCCTCGTGCCCATCC
CGGAGGAGGTGGTTCAGGCCGAGGCGGGCGGCATGCACACCGTGTGTCTCAGCAAGAGTGGCCA
GGTCTACTCCTTTGGCTGCAACGATGAAGGTGCCCTGGGAAGGGACACATCAGTGGAAGGCTCA
GAAACAGTCCCTGGGAAAGTGGAACTGCAGGAGAAGGTGGTACAGGTGTCAGCAGGAGACAGTC
ACACAGCAGCCCTCACCGAGGATGGCCGGGTCTTCCTCTGGGGCTCCTTTCGGGACAATAATGG
TGTGATTGGGCTGTTGGAGCCCATGAAGAAGAGTATGGTGCCCTTGCAAGTGGAGCTGGATGTG
ACCGTGGTGAAGGTAGCCTCAGGAAATGACCACTTGGTGATGCTGACAGTTGATGGTGACCTCT
ACACGTTGGGTTGTGGGGAGCAGGGCCAGCTGGGGCGTGTACCTGAGTTATTTGCCAACCGTGG
TGGCCGGAAGGGCCTTGAACGACTCCTTGTCCCCAAGTGTGTGATGCTGAAATCCAGGGGGAGC
CGGGGCTATGTGAGGTTCCAGGATGCCTTCTGTGGTGCCTATTTCACTTTCGCCATCTCCCACG
AGGGCCACGTATACGGCTTTGGCCTTTCCAACTACCATCAGCTTGGAACACCAGGCACAGAATC
ATGCTTCGTACCCCAGAACTTGACGTCCTTCAAGAATTCCACCAAGTCCTGGGTGGGCTTCTCT
GGTGGCCAGCACCATACGGTCTGCATGGACTCAGAAGGAAAAGCGTACAGCCTGGGCCGGGCTG
AGTATGGGCGGCTGGGCCTCGGCGAGGGTGCAGAGGAGAAGAGCATACCCACCCTCATCTCCAG
GCTGCCCTGCGTCTCCTCGGTGGCCTGCGGGGCCTCTGTGGGGTATGCTGTGACCAAGGATGGC
CGTGTTTTTGCCTGGGGCATGGGCACCAACTACCAGCTGGGCACAGGGCAGGACGACGACGCCT
GGAGTCCTGTGGAGATGACCGGCAAACAGCTGGAGAACCGTGTGGTCTTATCTGTGTCCAGCGG
GGGCCAGCACACAGTCTTACTGGTCAAGGACAAGGAACAGAGCTGATGAAGCCCGCGAGGGCCT
GGCCCCCACCTTCCCTCACAGCACAGGGAAGCAGAGACGGCCTCAGACCCCAGCAGCCTCTCCC
CAGCCTGTCCTGAACACTGTGTCATCTCCTGCCTTTTTCCCATCAACAGAGCAGAATCCTTCTC
CTCTTTTTCGTCCTCCTTTCTGGAATCATCCTGGCACCTGCAGGATGAAGCGGGGAGCGGAGGG
GCTGTCAGAAGGAACGTTGCTCGCCCTCACCGGAGACCTCTGGTTAGACGTTGTACCCCACTTC
TCTACCTCTCCCATCCTGGCTGGCTCTGACTTTGCCTTCCATAATACCAGAATGCCCTCCCTGG
GGGCTTGGTGCCTGCGGTCTGAGAAGTTGGGGCTCTGTCAGGCCCCACTCTAGTTACGTGCCAC
TCTTCCTGTCCTAAGAGTCCGCGGGCAGTCATCAAGCCCAGCTGTCATGGACCCAGGCCTGGGA
CAGCTGGAGAAGGGGTAGGGCTACAGAACCGTGGGCAACCGCAAGCCAAATATTTGGCTCTGAA
CAGGTGTCCATAGGGCAAAAGACTGATTCACTTGATGAAGGAAAAAGCCAACTACTGTAGCTGT
TCTCCCGGGAGCACAAAGCATAGTCTTTGCCTGTGGGGTGTCACATGTATAGTCCCCATCCACT
GGGCCTCACCTGCAGCCAAGGACCCCGGAGCCCCACTGGGCTCACAGGGCAGGGCAGGATGTGG
GCAGAAAGAGGATGGAGGTTTTATACACAAAGGTACAGCAATATTAAGAGGCAAGAGGGGAGGA
GGCTGGCCCCAAGAATCTGTACAGTGGCTGAGAAAATAGTTTTAATTTTTTTAAATTGTAAAAT
ATTTTGGAGGGGAGAGTAAAACCTTTTAACACTTTGAATAAAATTAGAGTTTTATAAAATAGGC
CACCTATTTTTCTACACACTCCCTGTCTTTCCAAGGCAGCATCCTACCACGTGCCAAGCGTTGT
CGGGAAGGGCAGGGTGAGCCCATGCCCCTAAACCTGGTGTCCCCTGCAGCTTGAAGCCTGTCCC
CTGTGGGTGCCCCCAAGGCTCTTCAAATCCATCAAAAAGGAGAAAGAAGTTTGAATGTTTATGC
TTCAGGAACCACTGGATTAAAAAAAAAAAATGGTGCAGTAA

hide sequence

RefSeq Acc Id:

XM_013519490 ⟹ XP_013374944

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955452	7,635,624 - 7,643,275 (+)	NCBI

Sequence:

show sequence

AACATCACCCCCAGAAGATGCTGTCCCCAAAAGCAAGAAAGTGAAAGACTCTCGTAACCAAGCA
GTGAAGCCCACTGCCTCCTGCAGTGGTCCCAGCACCCATTCCTGCCAAGGTGTCTGAGGACCAA
GCCCTCCTGACAAGAAAACCCAAGCAGTCTCACACAGGTCTCACAGAACAGCAGCAGGCGTGGT
GCTGACGCTGGGCCAGGGCGACGTGGGCCAGCTGGGGCTGGGGGAGAGTGTGATGGAGAGGAAG
AGGCCGGCCCTCGTGCCCATCCCGGAGGAGGTGGTTCAGGCCGAGGCGGGCGGCATGCACACCG
TGTGTCTCAGCAAGAGTGGCCAGGTCTACTCCTTTGGCTGCAACGATGAAGGTGCCCTGGGAAG
GGACACATCAGTGGAAGGCTCAGAAACAGTCCCTGGGAAAGTGGAACTGCAGGAGAAGGTGGTA
CAGGTGTCAGCAGGAGACAGTCACACAGCAGCCCTCACCGAGGATGGCCGGGTCTTCCTCTGGG
GCTCCTTTCGGGACAATAATGGTGTGATTGGGCTGTTGGAGCCCATGAAGAAGAGTATGGTGCC
CTTGCAAGTGGAGCTGGATGTGACCGTGGTGAAGGTAGCCTCAGGAAATGACCACTTGGTGATG
CTGACAGTTGATGGTGACCTCTACACGTTGGGTTGTGGGGAGCAGGGCCAGCTGGGGCGTGTAC
CTGAGTTATTTGCCAACCGTGGTGGCCGGAAGGGCCTTGAACGACTCCTTGTCCCCAAGTGTGT
GATGCTGAAATCCAGGGGGAGCCGGGGCTATGTGAGGTTCCAGGATGCCTTCTGTGGTGCCTAT
TTCACTTTCGCCATCTCCCACGAGGGCCACGTATACGGCTTTGGCCTTTCCAACTACCATCAGC
TTGGAACACCAGGCACAGAATCATGCTTCGTACCCCAGAACTTGACGTCCTTCAAGAATTCCAC
CAAGTCCTGGGTGGGCTTCTCTGGTGGCCAGCACCATACGGTCTGCATGGACTCAGAAGGAAAA
GCGTACAGCCTGGGCCGGGCTGAGTATGGGCGGCTGGGCCTCGGCGAGGGTGCAGAGGAGAAGA
GCATACCCACCCTCATCTCCAGGCTGCCCTGCGTCTCCTCGGTGGCCTGCGGGGCCTCTGTGGG
GTATGCTGTGACCAAGGATGGCCGTGTTTTTGCCTGGGGCATGGGCACCAACTACCAGCTGGGC
ACAGGGCAGGACGACGACGCCTGGAGTCCTGTGGAGATGACCGGCAAACAGCTGGAGAACCGTG
TGGTCTTATCTGTGTCCAGCGGGGGCCAGCACACAGTCTTACTGGTCAAGGACAAGGAACAGAG
CTGATGAAGCCCGCGAGGGCCTGGCCCCCACCTTCCCTCACAGCACAGGGAAGCAGAGACGGCC
TCAGACCCCAGCAGCCTCTCCCCAGCCTGTCCTGAACACTGTGTCATCTCCTGCCTTTTTCCCA
TCAACAGAGCAGAATCCTTCTCCTCTTTTTCGTCCTCCTTTCTGGAATCATCCTGGCACCTGCA
GGATGAAGCGGGGAGCGGAGGGGCTGTCAGAAGGAACGTTGCTCGCCCTCACCGGAGACCTCTG
GTTAGACGTTGTACCCCACTTCTCTACCTCTCCCATCCTGGCTGGCTCTGACTTTGCCTTCCAT
AATACCAGAATGCCCTCCCTGGGGGCTTGGTGCCTGCGGTCTGAGAAGTTGGGGCTCTGTCAGG
CCCCACTCTAGTTACGTGCCACTCTTCCTGTCCTAAGAGTCCGCGGGCAGTCATCAAGCCCAGC
TGTCATGGACCCAGGCCTGGGACAGCTGGAGAAGGGGTAGGGCTACAGAACCGTGGGCAACCGC
AAGCCAAATATTTGGCTCTGAACAGGTGTCCATAGGGCAAAAGACTGATTCACTTGATGAAGGA
AAAAGCCAACTACTGTAGCTGTTCTCCCGGGAGCACAAAGCATAGTCTTTGCCTGTGGGGTGTC
ACATGTATAGTCCCCATCCACTGGGCCTCACCTGCAGCCAAGGACCCCGGAGCCCCACTGGGCT
CACAGGGCAGGGCAGGATGTGGGCAGAAAGAGGATGGAGGTTTTATACACAAAGGTACAGCAAT
ATTAAGAGGCAAGAGGGGAGGAGGCTGGCCCCAAGAATCTGTACAGTGGCTGAGAAAATAGTTT
TAATTTTTTTAAATTGTAAAATATTTTGGAGGGGAGAGTAAAACCTTTTAACACTTTGAATAAA
ATTAGAGTTTTATAAAATAGGCCACCTATTTTTCTACACACTCCCTGTCTTTCCAAGGCAGCAT
CCTACCACGTGCCAAGCGTTGTCGGGAAGGGCAGGGTGAGCCCATGCCCCTAAACCTGGTGTCC
CCTGCAGCTTGAAGCCTGTCCCCTGTGGGTGCCCCCAAGGCTCTTCAAATCCATCAAAAAGGAG
AAAGAAGTTTGAATGTTTATGCTTCAGGAACCACTGGATTAAAAAAAAAAAATGGTGCAGTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005395012	(Get FASTA)	NCBI Sequence Viewer
	XP_005395013	(Get FASTA)	NCBI Sequence Viewer
	XP_013374944	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000011752
	ENSCLAP00000011752.1

RefSeq Acc Id:	XP_005395012 ⟸ XM_005394955
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2V9M0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKWQGTTWKDTKMPPKRVAKRTSPPEDAVPKSKKVKDSRNQAVKPTASCSGPSTHSCQVSHRS HRTAAGVVLTLGQGDVGQLGLGESVMERKRPALVPIPEEVVQAEAGGMHTVCLSKSGQVYSFGC NDEGALGRDTSVEGSETVPGKVELQEKVVQVSAGDSHTAALTEDGRVFLWGSFRDNNGVIGLLE PMKKSMVPLQVELDVTVVKVASGNDHLVMLTVDGDLYTLGCGEQGQLGRVPELFANRGGRKGLE RLLVPKCVMLKSRGSRGYVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFVPQN LTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPCVSS VACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDDDAWSPVEMTGKQLENRVVLSVSSGGQHTVL LVKDKEQS hide sequence

RefSeq Acc Id:	XP_005395013 ⟸ XM_005394956
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2V9M0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKWQGTTWKDTKMPPKRVAKRTSPPEDAVPKSKKVKVSHRSHRTAAGVVLTLGQGDVGQLGLG ESVMERKRPALVPIPEEVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSETVPGKV ELQEKVVQVSAGDSHTAALTEDGRVFLWGSFRDNNGVIGLLEPMKKSMVPLQVELDVTVVKVAS GNDHLVMLTVDGDLYTLGCGEQGQLGRVPELFANRGGRKGLERLLVPKCVMLKSRGSRGYVRFQ DAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFVPQNLTSFKNSTKSWVGFSGGQHHTV CMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPCVSSVACGASVGYAVTKDGRVFAWGM GTNYQLGTGQDDDAWSPVEMTGKQLENRVVLSVSSGGQHTVLLVKDKEQS hide sequence

RefSeq Acc Id:	XP_013374944 ⟸ XM_013519490
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2V9M0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERKRPALVPIPEEVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSETVPGKVELQ EKVVQVSAGDSHTAALTEDGRVFLWGSFRDNNGVIGLLEPMKKSMVPLQVELDVTVVKVASGND HLVMLTVDGDLYTLGCGEQGQLGRVPELFANRGGRKGLERLLVPKCVMLKSRGSRGYVRFQDAF CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFVPQNLTSFKNSTKSWVGFSGGQHHTVCMD SEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPCVSSVACGASVGYAVTKDGRVFAWGMGTN YQLGTGQDDDAWSPVEMTGKQLENRVVLSVSSGGQHTVLLVKDKEQS hide sequence

Ensembl Acc Id:

ENSCLAP00000011752 ⟸ ENSCLAT00000011890

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000008107	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000011890	ENTREZGENE
	ENSCLAT00000011890.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.30	UniProtKB/TrEMBL
InterPro	Ran_GTPase-activating	UniProtKB/TrEMBL
	RCC1/BLIP-II	UniProtKB/TrEMBL
	Reg_chr_condens	UniProtKB/TrEMBL
NCBI Gene	Rcc1	ENTREZGENE
PANTHER	REGULATOR OF CHROMOSOME CONDENSATION	UniProtKB/TrEMBL
	REGULATOR OF CHROMOSOME CONDENSATION	UniProtKB/TrEMBL
Pfam	RCC1	UniProtKB/TrEMBL
PRINTS	RCCNDNSATION	UniProtKB/TrEMBL
PROSITE	RCC1_1	UniProtKB/TrEMBL
	RCC1_2	UniProtKB/TrEMBL
	RCC1_3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50985	UniProtKB/TrEMBL
UniProt	A0A8C2V9M0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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