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Gene: RCC1 (regulator of chromosome condensation 1) Pan paniscus

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Symbol:

RCC1

Name:

regulator of chromosome condensation 1

RGD ID:

11668412

Description:

ENCODES a protein that exhibits chromatin binding (inferred); guanyl-nucleotide exchange factor activity (inferred); histone binding (inferred); INVOLVED IN chromosome segregation (inferred); G1/S transition of mitotic cell cycle (inferred); mitotic spindle organization (inferred); FOUND IN chromatin (inferred); condensed nuclear chromosome (inferred); cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

regulator of chromosome condensation

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	198,307,052 - 198,329,284 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	197,426,225 - 197,448,484 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	27,784,488 - 27,806,728 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	28,819,422 - 28,841,266 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	28,820,815 - 28,841,773 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromosome segregation (IEA)

G1/S transition of mitotic cell cycle (IEA)

mitotic spindle organization (IEA)

regulation of mitotic nuclear division (IEA)

spindle assembly (IEA)

Cellular Component

chromatin (IEA)

condensed nuclear chromosome (IEA)

cytoplasm (IEA)

nucleoplasm (IEA)

nucleus (IEA)

protein-containing complex (IEA)

Molecular Function

chromatin binding (IEA)

guanyl-nucleotide exchange factor activity (IEA)

histone binding (IEA)

nucleosomal DNA binding (IEA)

nucleosome binding (IEA)

protein binding (ISO)

protein heterodimerization activity (IEA)

small GTPase binding (IEA)

sulfate binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

RCC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	198,307,052 - 198,329,284 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	197,426,225 - 197,448,484 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	27,784,488 - 27,806,728 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	28,819,422 - 28,841,266 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	28,820,815 - 28,841,773 (+)	Ensembl	panpan1.1		panPan2

RCC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	28,506,043 - 28,538,989 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	28,505,943 - 28,539,300 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	28,832,555 - 28,865,501 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	28,717,332 - 28,738,194 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	28,653,183 - 28,686,118	NCBI
Celera	1	27,228,232 - 27,261,474 (+)	NCBI		Celera
Cytogenetic Map	1	p35.3	NCBI
HuRef	1	27,086,264 - 27,119,463 (+)	NCBI		HuRef
CHM1_1	1	28,947,946 - 28,981,201 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	28,347,999 - 28,380,949 (+)	NCBI		T2T-CHM13v2.0

Rcc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	132,059,230 - 132,073,061 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	132,059,230 - 132,080,916 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	132,331,919 - 132,345,750 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	132,331,919 - 132,353,605 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	131,887,838 - 131,901,577 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	131,603,999 - 131,617,738 (-)	NCBI		MGSCv36	mm8
Celera	4	130,492,831 - 130,506,571 (-)	NCBI		Celera
Cytogenetic Map	4	D2.3	NCBI
cM Map	4	65.2	NCBI

Rcc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	149,810,037 - 149,828,475 (-)	NCBI		GRCr8
mRatBN7.2	5	144,526,025 - 144,544,445 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	144,526,025 - 144,544,577 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	147,226,563 - 147,244,220 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	148,996,458 - 149,014,116 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	148,984,701 - 149,002,345 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	150,508,840 - 150,531,062 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	150,509,040 - 150,525,254 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	154,176,026 - 154,193,188 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	5	142,957,255 - 142,974,902 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Rcc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	7,612,784 - 7,643,275 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	7,612,784 - 7,643,275 (+)	NCBI	ChiLan1.0	ChiLan1.0

RCC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	71,948,159 - 71,972,902 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	71,948,165 - 71,964,353 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	68,524,663 - 68,540,842 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	72,507,102 - 72,531,854 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	72,507,108 - 72,530,338 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	69,335,321 - 69,351,510 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	70,343,443 - 70,359,626 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	71,341,326 - 71,357,632 (-)	NCBI		UU_Cfam_GSD_1.0

Rcc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	46,804,062 - 46,822,132 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	12,635,175 - 12,647,231 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	12,635,175 - 12,646,907 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RCC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	85,546,024 - 85,565,866 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	85,540,766 - 85,565,869 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	79,351,068 - 79,378,340 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RCC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	104,256,895 - 104,279,948 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	104,257,877 - 104,278,458 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	12,221,461 - 12,246,700 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rcc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	12,326,738 - 12,362,213 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	12,316,976 - 12,360,673 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003828093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003828095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008953413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014344214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055096042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055096043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055096046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055096048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055096059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055096065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063593587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063593597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063593599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063593603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063593605	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000038238 ⟹ ENSPPAP00000015547

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	28,820,815 - 28,841,266 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000038249 ⟹ ENSPPAP00000015558

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	28,832,197 - 28,841,773 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000038252 ⟹ ENSPPAP00000015561

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	28,832,197 - 28,841,773 (+)	Ensembl

RefSeq Acc Id:

XM_003828093 ⟹ XP_003828141

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	198,307,052 - 198,328,046 (-)	NCBI
NHGRI_mPanPan1	1	197,426,225 - 197,447,251 (-)	NCBI
Mhudiblu_PPA_v0	1	27,785,870 - 27,806,728 (+)	NCBI
PanPan1.1	1	28,820,815 - 28,841,266 (+)	NCBI

Sequence:

show sequence

CGGGAGCGCGCCACATGCAGATCCTGGGATGGCCGCCAGGGGCCGCCGGGCTCTTTGTTTTCCT
TTCTCACCCGGGTCGGGGCCAGAGGCCTGCAGAGCGCATGCTCTGGGGCAGTTCGCGGCCCGGC
GGGGAGCGCCGGAGTTCCTTGTGGCCGACGTGCACCAAGGACAGGAAGATGTCACCCAAGCGCA
TAGCTAAAAGAAGGTCCCCCCCAGCAGATGCCATCCCCAAAAGCAAGAAGGTGAAGGTCTCACA
CAGGTCCCACAGCACAGAACCCGGCTTGGTGCTGACACTAGGCCAGGGCGACGTGGGCCAGCTG
GGGCTGGGTGAGAATGTGATGGAGAGGAAGAAGCCGGCCCTGGTATCCATTCCAGAGGATGTTG
TGCAGGCTGAGGCTGGGGGCATGCACACCGTGTGTCTAAGCAAAAGTGGCCAGGTCTATTCCTT
CGGCTGCAATGATGAGGGTGCCCTGGGAAGGGACACATCAGTGGAGGGCTCGGAGATGGTCCCT
GGGAAAGTGGAGCTGCAAGAGAAGGTGGTACAGGTGTCAGCAGGAGACAGTCACACAGCAGCCC
TCACCGATGATGGCCGTGTCTTCCTCTGGGGCTCCTTCCGGGACAATAACGGTGTGATTGGACT
GTTGGAGCCCATGAAGAAGAGCATGGTGCCCGTGCAGGTGCAGCTGGATGTGCCTGTGGTAAAG
GTGGCCTCAGGAAACGACCACTTGGTGATGCTGACAGCTGATGGTGACCTCTACACCTTGGGCT
GCGGGGAACAGGGCCAGCTAGGCCGTGTGCCTGAGTTATTTGCCAACCGTGGTGGCCGGCAAGG
CCTCGAACGACTCCTGGTCCCCAAGTGTGTGATGCTGAAATCCAGGGGAAGCCGGGGCCACGTG
AGATTCCAGGATGCCTTTTGTGGTGCCTATTTCACCTTTGCCATCTCCCATGAGGGCCACGTGT
ACGGCTTCGGCCTCTCCAACTACCATCAGCTTGGAACTCCGGGCACAGAATCTTGCTTCATACC
CCAGAACCTAACATCCTTCAAGAATTCCACCAAGTCCTGGGTGGGCTTCTCTGGTGGCCAGCAC
CATACAGTCTGCATGGATTCGGAAGGAAAAGCATACAGCCTGGGCCGGGCTGAGTATGGGCGGC
TGGGCCTTGGAGAGGGTGCTGAGGAGAAGAGCATACCCACCCTCATCTCCAGGCTGCCTGCTGT
CTCCTCAGTGGCTTGTGGGGCCTCTGTGGGGTATGCTGTGACCAAGGATGGTCGTGTTTTCGCC
TGGGGCATGGGCACCAACTACCAGCTGGGCACAGGGCAGGATGAGGACGCCTGGAGCCCTGTGG
AGATGACAGGCAAACAGCTGGAGAACCGTGTGGTCTTATCTGTGTCCAGCGGGGGCCAGCATAC
AGTCTTATTAGTCAAGGACAAAGAACAGAGCTGATGAAGCCTCTGAGGGCCTGGCTTCTGTCCC
GCACAACCCCCCTCACAGAACAGGGAAGCAGTGACAGCTGCAGATGGCAGCGGGCCTCTCCCCA
GCCCTGAGCACTGTGTCAGTTCCTGCCTTTTCTCATCAGCAGAACAGAATCCTTTTCCTCTTTT
CCTTCCTCCTCTTTGGAATTTTCCTGGGACCTACAGAATAAAGGGGGGGATGGACAGGGGGTTT
TCAGAAGGAACATGGCTCACTCAGAGCTATATGGTTGGACGTTTCTCCCCTTTTCCCTACCTTC
CATGGTCCTGGTTGGCCCTGACTTTGCCTACTAGAAAACCAAAACTTCCCCCCTGGGGTTTCGT
GCCCACTCTCTGAGAAGTTGGGGCTCCATCAAGCCCCATTCTAGTCATGTGCCCCTTTCCTGTC
CCTAACAGTCCACAGGCAAACAAATGGTACAGTCATAAGAGCCATCTGTCACGGACCCACCCCC
AGAGGAACGTGCAGAAAAAAGCAGAGCTGCATGGCTGTGGGCAACTATAAGCCAAATATTTGGC
TCAGAACAGGTGTCCATGGGACAAAAAAGAACGATCCTCCACTTGACCAAGAAAAAAGTGATTC
TCCCAGAAGCACAAAGCATACTCTTGCCCCTCAGGTGTTGCTTGTGTACATCGTACCCATCCAT
TTGGCTTCACCTGCAGCCAACGGCCTGGAATCGCAAAGAGACACCACTCTGGGCAGAGCAGAGC
AGGGTATGGGGTGGGGAGAGAGGGTGGAGGGTTTTATAAACAAACTTAACAGCAATATTGAAAG
GAAGGGGGGGGGGTTTGAGGGAGGGACAGAGTGTTGGAAGGCCAGAGACCAGTCCTGAGATGGA
AACAGCAACTTGTACAGTGGCTGAGAAAATAGGATATAGTTTTGATTTTTTTAATTGTAAAATA
TTTTGGAGGGAGAACAAAATCTTTTAACATTTTGAATAAATTTAGAGTTTTATAAAATAGGCCA
CTTGTTTTCTACACATTCCCTGCTTTTTAAGGGAGCACATATTATGTGCCAGGCACTGCTGGGA
AAGACAGAATAAACTATAAACCTAGTGTTGAGGCTACAA

hide sequence

RefSeq Acc Id:

XM_003828095 ⟹ XP_003828143

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	198,307,052 - 198,327,885 (-)	NCBI
NHGRI_mPanPan1	1	197,426,225 - 197,447,251 (-)	NCBI
Mhudiblu_PPA_v0	1	27,785,913 - 27,806,728 (+)	NCBI
PanPan1.1	1	28,820,904 - 28,841,266 (+)	NCBI

Sequence:

show sequence

CCTGCAGAGCGCATGCTCTGGGGCAGTTCGCGGCCCGGCGGGGAGCGCCGGAGTTCCTTGTGGC
CGACGTGCACCAAGGACAGGAAGATGTCACCCAAGCGCATAGCTAAAAGAAGGTCCCCCCCAGC
AGATGCCATCCCCAAAAGCAAGAAGGTGAAGGACACGAGGGCCGCTGCCTCCCGTCGCGTTCCT
GGCGCCCGCTCCTGCCAAGTCTCACACAGGTCCCACAGCACAGAACCCGGCTTGGTGCTGACAC
TAGGCCAGGGCGACGTGGGCCAGCTGGGGCTGGGTGAGAATGTGATGGAGAGGAAGAAGCCGGC
CCTGGTATCCATTCCAGAGGATGTTGTGCAGGCTGAGGCTGGGGGCATGCACACCGTGTGTCTA
AGCAAAAGTGGCCAGGTCTATTCCTTCGGCTGCAATGATGAGGGTGCCCTGGGAAGGGACACAT
CAGTGGAGGGCTCGGAGATGGTCCCTGGGAAAGTGGAGCTGCAAGAGAAGGTGGTACAGGTGTC
AGCAGGAGACAGTCACACAGCAGCCCTCACCGATGATGGCCGTGTCTTCCTCTGGGGCTCCTTC
CGGGACAATAACGGTGTGATTGGACTGTTGGAGCCCATGAAGAAGAGCATGGTGCCCGTGCAGG
TGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCAGGAAACGACCACTTGGTGATGCTGACAGC
TGATGGTGACCTCTACACCTTGGGCTGCGGGGAACAGGGCCAGCTAGGCCGTGTGCCTGAGTTA
TTTGCCAACCGTGGTGGCCGGCAAGGCCTCGAACGACTCCTGGTCCCCAAGTGTGTGATGCTGA
AATCCAGGGGAAGCCGGGGCCACGTGAGATTCCAGGATGCCTTTTGTGGTGCCTATTTCACCTT
TGCCATCTCCCATGAGGGCCACGTGTACGGCTTCGGCCTCTCCAACTACCATCAGCTTGGAACT
CCGGGCACAGAATCTTGCTTCATACCCCAGAACCTAACATCCTTCAAGAATTCCACCAAGTCCT
GGGTGGGCTTCTCTGGTGGCCAGCACCATACAGTCTGCATGGATTCGGAAGGAAAAGCATACAG
CCTGGGCCGGGCTGAGTATGGGCGGCTGGGCCTTGGAGAGGGTGCTGAGGAGAAGAGCATACCC
ACCCTCATCTCCAGGCTGCCTGCTGTCTCCTCAGTGGCTTGTGGGGCCTCTGTGGGGTATGCTG
TGACCAAGGATGGTCGTGTTTTCGCCTGGGGCATGGGCACCAACTACCAGCTGGGCACAGGGCA
GGATGAGGACGCCTGGAGCCCTGTGGAGATGACAGGCAAACAGCTGGAGAACCGTGTGGTCTTA
TCTGTGTCCAGCGGGGGCCAGCATACAGTCTTATTAGTCAAGGACAAAGAACAGAGCTGATGAA
GCCTCTGAGGGCCTGGCTTCTGTCCCGCACAACCCCCCTCACAGAACAGGGAAGCAGTGACAGC
TGCAGATGGCAGCGGGCCTCTCCCCAGCCCTGAGCACTGTGTCAGTTCCTGCCTTTTCTCATCA
GCAGAACAGAATCCTTTTCCTCTTTTCCTTCCTCCTCTTTGGAATTTTCCTGGGACCTACAGAA
TAAAGGGGGGGATGGACAGGGGGTTTTCAGAAGGAACATGGCTCACTCAGAGCTATATGGTTGG
ACGTTTCTCCCCTTTTCCCTACCTTCCATGGTCCTGGTTGGCCCTGACTTTGCCTACTAGAAAA
CCAAAACTTCCCCCCTGGGGTTTCGTGCCCACTCTCTGAGAAGTTGGGGCTCCATCAAGCCCCA
TTCTAGTCATGTGCCCCTTTCCTGTCCCTAACAGTCCACAGGCAAACAAATGGTACAGTCATAA
GAGCCATCTGTCACGGACCCACCCCCAGAGGAACGTGCAGAAAAAAGCAGAGCTGCATGGCTGT
GGGCAACTATAAGCCAAATATTTGGCTCAGAACAGGTGTCCATGGGACAAAAAAGAACGATCCT
CCACTTGACCAAGAAAAAAGTGATTCTCCCAGAAGCACAAAGCATACTCTTGCCCCTCAGGTGT
TGCTTGTGTACATCGTACCCATCCATTTGGCTTCACCTGCAGCCAACGGCCTGGAATCGCAAAG
AGACACCACTCTGGGCAGAGCAGAGCAGGGTATGGGGTGGGGAGAGAGGGTGGAGGGTTTTATA
AACAAACTTAACAGCAATATTGAAAGGAAGGGGGGGGGGTTTGAGGGAGGGACAGAGTGTTGGA
AGGCCAGAGACCAGTCCTGAGATGGAAACAGCAACTTGTACAGTGGCTGAGAAAATAGGATATA
GTTTTGATTTTTTTAATTGTAAAATATTTTGGAGGGAGAACAAAATCTTTTAACATTTTGAATA
AATTTAGAGTTTTATAAAATAGGCCACTTGTTTTCTACACATTCCCTGCTTTTTAAGGGAGCAC
ATATTATGTGCCAGGCACTGCTGGGAAAGACAGAATAAACTATAAACCTAGTGTTGAGGCTACA
A

hide sequence

RefSeq Acc Id:

XM_008953413 ⟹ XP_008951661

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	198,307,052 - 198,329,284 (-)	NCBI
NHGRI_mPanPan1	1	197,426,225 - 197,448,484 (-)	NCBI
Mhudiblu_PPA_v0	1	27,784,500 - 27,806,728 (+)	NCBI
PanPan1.1	1	28,819,422 - 28,841,266 (+)	NCBI

Sequence:

show sequence

CATGAATGTGTAAGATCTTGGAGGAAGACAGCAGAGAGAGAGAGAGAGATCAGAGATCCCAGGG
TTAAAAGTTGGAGAAATTTCACAGTACATCATCCAAAAGAGGAGTCCATGATGGAGGCAGAGGT
AAACTTGGAGAGGACAGGAAGATGTCACCCAAGCGCATAGCTAAAAGAAGGTCCCCCCCAGCAG
ATGCCATCCCCAAAAGCAAGAAGGTGAAGGTCTCACACAGGTCCCACAGCACAGAACCCGGCTT
GGTGCTGACACTAGGCCAGGGCGACGTGGGCCAGCTGGGGCTGGGTGAGAATGTGATGGAGAGG
AAGAAGCCGGCCCTGGTATCCATTCCAGAGGATGTTGTGCAGGCTGAGGCTGGGGGCATGCACA
CCGTGTGTCTAAGCAAAAGTGGCCAGGTCTATTCCTTCGGCTGCAATGATGAGGGTGCCCTGGG
AAGGGACACATCAGTGGAGGGCTCGGAGATGGTCCCTGGGAAAGTGGAGCTGCAAGAGAAGGTG
GTACAGGTGTCAGCAGGAGACAGTCACACAGCAGCCCTCACCGATGATGGCCGTGTCTTCCTCT
GGGGCTCCTTCCGGGACAATAACGGTGTGATTGGACTGTTGGAGCCCATGAAGAAGAGCATGGT
GCCCGTGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCAGGAAACGACCACTTGGTG
ATGCTGACAGCTGATGGTGACCTCTACACCTTGGGCTGCGGGGAACAGGGCCAGCTAGGCCGTG
TGCCTGAGTTATTTGCCAACCGTGGTGGCCGGCAAGGCCTCGAACGACTCCTGGTCCCCAAGTG
TGTGATGCTGAAATCCAGGGGAAGCCGGGGCCACGTGAGATTCCAGGATGCCTTTTGTGGTGCC
TATTTCACCTTTGCCATCTCCCATGAGGGCCACGTGTACGGCTTCGGCCTCTCCAACTACCATC
AGCTTGGAACTCCGGGCACAGAATCTTGCTTCATACCCCAGAACCTAACATCCTTCAAGAATTC
CACCAAGTCCTGGGTGGGCTTCTCTGGTGGCCAGCACCATACAGTCTGCATGGATTCGGAAGGA
AAAGCATACAGCCTGGGCCGGGCTGAGTATGGGCGGCTGGGCCTTGGAGAGGGTGCTGAGGAGA
AGAGCATACCCACCCTCATCTCCAGGCTGCCTGCTGTCTCCTCAGTGGCTTGTGGGGCCTCTGT
GGGGTATGCTGTGACCAAGGATGGTCGTGTTTTCGCCTGGGGCATGGGCACCAACTACCAGCTG
GGCACAGGGCAGGATGAGGACGCCTGGAGCCCTGTGGAGATGACAGGCAAACAGCTGGAGAACC
GTGTGGTCTTATCTGTGTCCAGCGGGGGCCAGCATACAGTCTTATTAGTCAAGGACAAAGAACA
GAGCTGATGAAGCCTCTGAGGGCCTGGCTTCTGTCCCGCACAACCCCCCTCACAGAACAGGGAA
GCAGTGACAGCTGCAGATGGCAGCGGGCCTCTCCCCAGCCCTGAGCACTGTGTCAGTTCCTGCC
TTTTCTCATCAGCAGAACAGAATCCTTTTCCTCTTTTCCTTCCTCCTCTTTGGAATTTTCCTGG
GACCTACAGAATAAAGGGGGGGATGGACAGGGGGTTTTCAGAAGGAACATGGCTCACTCAGAGC
TATATGGTTGGACGTTTCTCCCCTTTTCCCTACCTTCCATGGTCCTGGTTGGCCCTGACTTTGC
CTACTAGAAAACCAAAACTTCCCCCCTGGGGTTTCGTGCCCACTCTCTGAGAAGTTGGGGCTCC
ATCAAGCCCCATTCTAGTCATGTGCCCCTTTCCTGTCCCTAACAGTCCACAGGCAAACAAATGG
TACAGTCATAAGAGCCATCTGTCACGGACCCACCCCCAGAGGAACGTGCAGAAAAAAGCAGAGC
TGCATGGCTGTGGGCAACTATAAGCCAAATATTTGGCTCAGAACAGGTGTCCATGGGACAAAAA
AGAACGATCCTCCACTTGACCAAGAAAAAAGTGATTCTCCCAGAAGCACAAAGCATACTCTTGC
CCCTCAGGTGTTGCTTGTGTACATCGTACCCATCCATTTGGCTTCACCTGCAGCCAACGGCCTG
GAATCGCAAAGAGACACCACTCTGGGCAGAGCAGAGCAGGGTATGGGGTGGGGAGAGAGGGTGG
AGGGTTTTATAAACAAACTTAACAGCAATATTGAAAGGAAGGGGGGGGGGTTTGAGGGAGGGAC
AGAGTGTTGGAAGGCCAGAGACCAGTCCTGAGATGGAAACAGCAACTTGTACAGTGGCTGAGAA
AATAGGATATAGTTTTGATTTTTTTAATTGTAAAATATTTTGGAGGGAGAACAAAATCTTTTAA
CATTTTGAATAAATTTAGAGTTTTATAAAATAGGCCACTTGTTTTCTACACATTCCCTGCTTTT
TAAGGGAGCACATATTATGTGCCAGGCACTGCTGGGAAAGACAGAATAAACTATAAACCTAGTG
TTGAGGCTACAA

hide sequence

RefSeq Acc Id:

XM_055096042 ⟹ XP_054952017

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	198,307,052 - 198,327,421 (-)	NCBI
NHGRI_mPanPan1	1	197,426,225 - 197,446,607 (-)	NCBI

RefSeq Acc Id:

XM_055096043 ⟹ XP_054952018

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	198,307,052 - 198,327,441 (-)	NCBI
NHGRI_mPanPan1	1	197,426,225 - 197,446,627 (-)	NCBI

RefSeq Acc Id:

XM_055096046 ⟹ XP_054952021

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	198,307,052 - 198,327,402 (-)	NCBI
NHGRI_mPanPan1	1	197,426,225 - 197,446,588 (-)	NCBI

RefSeq Acc Id:

XM_055096048 ⟹ XP_054952023

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	198,307,052 - 198,327,407 (-)	NCBI
NHGRI_mPanPan1	1	197,426,225 - 197,446,593 (-)	NCBI

RefSeq Acc Id:

XM_055096059 ⟹ XP_054952034

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	198,307,052 - 198,327,427 (-)	NCBI
NHGRI_mPanPan1	1	197,426,225 - 197,446,613 (-)	NCBI

RefSeq Acc Id:

XM_055096065 ⟹ XP_054952040

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	198,307,052 - 198,327,453 (-)	NCBI
NHGRI_mPanPan1	1	197,426,225 - 197,446,639 (-)	NCBI

RefSeq Acc Id:

XM_063593587 ⟹ XP_063449657

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	198,307,052 - 198,328,046 (-)	NCBI

RefSeq Acc Id:

XM_063593597 ⟹ XP_063449667

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	198,307,052 - 198,327,345 (-)	NCBI

RefSeq Acc Id:

XM_063593599 ⟹ XP_063449669

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	198,307,052 - 198,322,371 (-)	NCBI

RefSeq Acc Id:

XM_063593603 ⟹ XP_063449673

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	198,307,052 - 198,327,368 (-)	NCBI

RefSeq Acc Id:

XM_063593605 ⟹ XP_063449675

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	198,307,052 - 198,327,709 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003828141	(Get FASTA)	NCBI Sequence Viewer
	XP_003828143	(Get FASTA)	NCBI Sequence Viewer
	XP_008951661	(Get FASTA)	NCBI Sequence Viewer
	XP_054952017	(Get FASTA)	NCBI Sequence Viewer
	XP_054952018	(Get FASTA)	NCBI Sequence Viewer
	XP_054952021	(Get FASTA)	NCBI Sequence Viewer
	XP_054952023	(Get FASTA)	NCBI Sequence Viewer
	XP_054952034	(Get FASTA)	NCBI Sequence Viewer
	XP_054952040	(Get FASTA)	NCBI Sequence Viewer
	XP_063449657	(Get FASTA)	NCBI Sequence Viewer
	XP_063449667	(Get FASTA)	NCBI Sequence Viewer
	XP_063449669	(Get FASTA)	NCBI Sequence Viewer
	XP_063449673	(Get FASTA)	NCBI Sequence Viewer
	XP_063449675	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000015547.1
	ENSPPAP00000015558.1
	ENSPPAP00000015561.1

RefSeq Acc Id:	XP_008951661 ⟸ XM_008953413
- Peptide Label:	isoform X10
- UniProtKB:	A0A2R9AE32 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSPKRIAKRRSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVS IPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGD SHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGD LYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAIS HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR AEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDED AWSPVEMTGKQLENRVVLSVSSGGQHTVLLVKDKEQS hide sequence

RefSeq Acc Id:

XP_003828141 ⟸ XM_003828093

- Peptide Label:

isoform X3

- Sequence:

show sequence

MQILGWPPGAAGLFVFLSHPGRGQRPAERMLWGSSRPGGERRSSLWPTCTKDRKMSPKRIAKRR
SPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEA
GGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDG
RVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQG
QLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGL
SNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGE
GAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMTGK
QLENRVVLSVSSGGQHTVLLVKDKEQS

hide sequence

RefSeq Acc Id:

XP_003828143 ⟸ XM_003828095

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLWGSSRPGGERRSSLWPTCTKDRKMSPKRIAKRRSPPADAIPKSKKVKDTRAAASRRVPGARS
CQVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSG
QVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNN
GVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANR
GGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTE
SCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS
RLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMTGKQLENRVVLSVSS
GGQHTVLLVKDKEQS

hide sequence

Ensembl Acc Id:

ENSPPAP00000015547 ⟸ ENSPPAT00000038238

Ensembl Acc Id:

ENSPPAP00000015561 ⟸ ENSPPAT00000038252

Ensembl Acc Id:

ENSPPAP00000015558 ⟸ ENSPPAT00000038249

RefSeq Acc Id:	XP_054952040 ⟸ XM_055096065
- Peptide Label:	isoform X10
- UniProtKB:	A0A2R9AE32 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054952018 ⟸ XM_055096043
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_054952034 ⟸ XM_055096059
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_054952017 ⟸ XM_055096042
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_054952023 ⟸ XM_055096048
- Peptide Label:	isoform X8
- UniProtKB:	A0A2R9AKL9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054952021 ⟸ XM_055096046
- Peptide Label:	isoform X8
- UniProtKB:	A0A2R9AKL9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063449657 ⟸ XM_063593587
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063449675 ⟸ XM_063593605
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063449673 ⟸ XM_063593603
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063449667 ⟸ XM_063593597
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063449669 ⟸ XM_063593599
- Peptide Label:	isoform X6

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000030910	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000038238.1	UniProtKB/TrEMBL
	ENSPPAT00000038249.1	UniProtKB/TrEMBL
	ENSPPAT00000038252.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.30	UniProtKB/TrEMBL
InterPro	Ran_GTPase-activating	UniProtKB/TrEMBL
	RCC1/BLIP-II	UniProtKB/TrEMBL
	Reg_chr_condens	UniProtKB/TrEMBL
NCBI Gene	RCC1	ENTREZGENE
PANTHER	REGULATOR OF CHROMOSOME CONDENSATION	UniProtKB/TrEMBL
	REGULATOR OF CHROMOSOME CONDENSATION	UniProtKB/TrEMBL
Pfam	RCC1	UniProtKB/TrEMBL
PRINTS	RCCNDNSATION	UniProtKB/TrEMBL
PROSITE	RCC1_1	UniProtKB/TrEMBL
	RCC1_2	UniProtKB/TrEMBL
	RCC1_3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50985	UniProtKB/TrEMBL
UniProt	A0A2R9AE32	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9AKL9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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