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Gene: Hsbp1 (heat shock factor binding protein 1) Chinchilla lanigera

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Symbol:

Hsbp1

Name:

heat shock factor binding protein 1

RGD ID:

8833325

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN axonal transport of mitochondrion (ortholog); endodermal cell differentiation (ortholog); muscle contraction (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

heat shock factor-binding protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955564	396,133 - 401,251 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955564	396,985 - 400,975 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axonal transport of mitochondrion (ISO)

endodermal cell differentiation (ISO)

muscle contraction (ISO)

Molecular Function

identical protein binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Hsbp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955564	396,133 - 401,251 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955564	396,985 - 400,975 (-)	NCBI	ChiLan1.0	ChiLan1.0

HSBP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	83,807,978 - 83,819,737 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	83,719,311 - 83,819,737 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	83,841,583 - 83,853,342 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	82,399,094 - 82,404,095 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	82,399,093 - 82,404,095	NCBI
Celera	16	68,142,699 - 68,147,697 (+)	NCBI		Celera
Cytogenetic Map	16	q23.3	NCBI
HuRef	16	69,593,015 - 69,598,111 (+)	NCBI		HuRef
CHM1_1	16	85,252,863 - 85,257,959 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	89,873,707 - 89,885,464 (+)	NCBI		T2T-CHM13v2.0

Hsbp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	120,071,277 - 120,075,668 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	120,071,227 - 120,075,661 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	119,344,538 - 119,348,929 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	119,344,488 - 119,348,922 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	121,868,438 - 121,872,829 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	122,230,515 - 122,234,906 (+)	NCBI		MGSCv36	mm8
Celera	8	123,560,285 - 123,564,676 (+)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	67.54	NCBI

Hsbp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	64,309,703 - 64,314,035 (+)	NCBI		GRCr8
mRatBN7.2	19	47,401,039 - 47,405,373 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	47,400,966 - 47,435,821 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	54,195,408 - 54,199,740 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	54,875,905 - 54,880,295 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	57,090,522 - 57,094,858 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	51,985,196 - 51,989,528 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	51,985,170 - 51,989,544 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	62,733,736 - 62,738,068 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	49,589,574 - 49,594,599 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	49,594,451 - 49,599,480 (+)	NCBI
Celera	19	46,660,240 - 46,664,572 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

HSBP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	93,552,976 - 93,558,004 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	99,471,430 - 99,476,467 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	64,429,442 - 64,434,467 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	83,821,821 - 83,830,023 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

HSBP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	68,474,960 - 68,479,206 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	68,475,948 - 68,479,145 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	68,488,788 - 68,492,964 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	68,773,360 - 68,777,530 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	68,773,360 - 68,777,489 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	68,720,849 - 68,725,018 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	68,557,358 - 68,561,548 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	68,973,475 - 68,977,644 (-)	NCBI		UU_Cfam_GSD_1.0

Hsbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	28,158,396 - 28,162,850 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936641	3,911,943 - 3,916,397 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HSBP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	4,788,313 - 4,798,191 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	4,795,203 - 4,798,158 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

HSBP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	69,224,715 - 69,228,607 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666047	6,592,908 - 6,597,926 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hsbp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	3,685,189 - 3,690,642 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	3,686,523 - 3,690,585 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005413237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001232387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01074204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01008618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000001053 ⟹ ENSCLAP00000001015

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955564	396,133 - 401,251 (-)	Ensembl

RefSeq Acc Id:

XM_005413237 ⟹ XP_005413294

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955564	396,985 - 400,973 (-)	NCBI

Sequence:

show sequence

TCCCGCGAGTAGTCCAAGCCGTCACGAGAAGTGGCGGCTGGGGGCCTTGGCTCGGACAAACGGA
AGTGTAGGTGACTGTCGGGGACTTCGCCGCCAAGCTGGGAACCGGGGAGATGGCCGAGACCGAC
CCCAAGACCATGCAGGACCTCACCTCGGTGGTGCAGACCCTCTTACAGCAGATGCAAGATAAAT
TTCAGACTATGTCTGACCAGATCATTGGGAGAATTGATGATATGAGTAGTCGCATTGATGATCT
GGAGAAAAACATCGCAGACCTCATGACACAGGCTGGGGTGGAGGAACTGGAAGGTGAAAACAAG
ATACCTGCCACACAAAAAAGTTGAAGGTTGCTGATAAATTGCATTGAAATCTGGAACACCATTT
TTCCAAGCCAAGAGAAGACCAGATGGCTTTTTGCAACTAACCACTATGTGTAGACAGGTTTTAT
ATTTTAAAGTGTGCATTCTTACCACATCCCATATACTTAGTTTATAGAGTGATTTCCCCTCAGT
TTCTCAAATGTGGTATCTTCACATCTTGGAACTTGGTCAGTTGTGCTCTTCATTATTAAACACT
AAAACTTTGGCAGTTCCTACATAAAATTGTCAAATTTTTTAGTGTATTTTTGTGAAGTCATTTT
TTTCTGCCATTGGTTTTGTAGTAGTTGCTGTTCCGTAGAAGTTTCTGTATAATATTTCACTAGA
TAAGTGGTAAGCCCTTCAATTATTGTTAGATCTGGTGAAGTAAGGTATTTGTAGAGTTTAAGGT
TCTTTCATTTTCAGCACAAAGTGACTGTTGAACTAACACTAGTGTGTCGGCAATACTGTACTTT
TCAAATGGCTAAAACATTTAAAAGTTTGTTTAGTAATATCTGTCATTACTCTGTTGCCAAAACT
CAGAATTGAACCATAACTTATGACGTAAGTTTGTGGGATCAGATGCTAAAGTCACTGAGAAGTA
ACCACTGCCACTTTACTGCGTTAGCATTTTTTAAATACTGAAAGTAACTGAATAGCCTGATGTA
CAGAGGCTTTCGTTCATTAAGAGTTTTGCATGAGATTTTAATACTTCAGTAGGACCTTACATTG
TTCATCTACAATGGTTACCATAAAAAATCTGGCAGGAATTTGAAACAACTACTCATCCTTTCTT
TGAGCTGCTGTTTGGAAAAGAGAGAAGAGAAAGCTATTTATCTGTGCCAGTCACTTGGCTAGAA
TATGATGAATGAACGGTGGTAGGCTCAAGTTTTTAAAAGGTTTTCTGTTGCAAATTCTTGCAGA
ATAACAGTTTTATCAGTGGTGATAGAAGAGGAGGTAGTCTTGCTACTCAGGAACGTAGTGTCAG
GAGTGCTGAGCCGCAGCCAGCGCCCACGGCCTGGAAGGTGACCCACGTGGTCACCACAGCGATT
TCATCCAGCAGAAACTGAATGAGCGAAACAGTTGGAGGCGGTGCGGTCCTTTCCAGTACGATTT
TCTTTAAAGTTTCCTGTATCACCGGGCTTGTTTATATTGCAAACTTAATATTAAATATTTTTCC
TATTTATAAATTATATGAGGAACACAACAGTCAGATTTTTCTGTAATAAAGTTGCCACAGTTGT
TCCCCAGCCGCACAGTCCTGCAGTTGGGCAGATTAGTGAGACTAAGCTCGCCCCACAGTGGCCC
ACTCCACCTGAGCCAGGCAGCAGAAGCCTGCATGCAGGACACTTTGGAGCCTTGTGAATGGCAA
GCGAAAGTGATAAGGCTGCTCGTGGATGGAAGAGATGGGATCTTAGGAGTTGGCTTCCTTAAAT
GTCAGACTTCAGAGGCGCCTGTGTGTCCCGTCCCAGTCGTCCCCCTCCCCCCCACTTCCTTCCC
CCTGGCCAAAAACATCTGCCGTAAATAAAGGTGCCTGAAATCCTGCTACTGGA

hide sequence

RefSeq Acc Id:

XR_001232387

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955564	396,985 - 400,975 (-)	NCBI

Sequence:

show sequence

GGTCCCGCGAGTAGTCCAAGCCGTCACGAGAAGTGGCGGCTGGGGGCCTTGGCTCGGACAAACG
GAAGTGTAGGTGACTGTCGGGGACTTCGCCGCCAAGCTGGGAACCGGGGAGATGGCCGAGACCG
ACCCCAAGACCATGCAGGACCTCACCTCGGTGGTGCAGACCCTCTTACAGCAGATGCAAGATAA
ATTTCAGACTATGTCTGACCAGATCATTGGGAGAATTGATGATATGAGTAGTCGCATTGATGAT
CTGGAGAAAAACATCGCAGACCTCATGACACAGGCTGGGGTGGAGGAACTGGAAGGTGAAAACA
AGATACCTGCCACACAAAAAAGTTGAAGGTGAGGAAGGACACAGTTGTATTAATTTTTAAGAAG
AGTACAGAGAGTTAATGTGTTGCTGATAAATTGCATTGAAATCTGGAACACCATTTTTCCAAGC
CAAGAGAAGACCAGATGGCTTTTTGCAACTAACCACTATGTGTAGACAGGTTTTATATTTTAAA
GTGTGCATTCTTACCACATCCCATATACTTAGTTTATAGAGTGATTTCCCCTCAGTTTCTCAAA
TGTGGTATCTTCACATCTTGGAACTTGGTCAGTTGTGCTCTTCATTATTAAACACTAAAACTTT
GGCAGTTCCTACATAAAATTGTCAAATTTTTTAGTGTATTTTTGTGAAGTCATTTTTTTCTGCC
ATTGGTTTTGTAGTAGTTGCTGTTCCGTAGAAGTTTCTGTATAATATTTCACTAGATAAGTGGT
AAGCCCTTCAATTATTGTTAGATCTGGTGAAGTAAGGTATTTGTAGAGTTTAAGGTTCTTTCAT
TTTCAGCACAAAGTGACTGTTGAACTAACACTAGTGTGTCGGCAATACTGTACTTTTCAAATGG
CTAAAACATTTAAAAGTTTGTTTAGTAATATCTGTCATTACTCTGTTGCCAAAACTCAGAATTG
AACCATAACTTATGACGTAAGTTTGTGGGATCAGATGCTAAAGTCACTGAGAAGTAACCACTGC
CACTTTACTGCGTTAGCATTTTTTAAATACTGAAAGTAACTGAATAGCCTGATGTACAGAGGCT
TTCGTTCATTAAGAGTTTTGCATGAGATTTTAATACTTCAGTAGGACCTTACATTGTTCATCTA
CAATGGTTACCATAAAAAATCTGGCAGGAATTTGAAACAACTACTCATCCTTTCTTTGAGCTGC
TGTTTGGAAAAGAGAGAAGAGAAAGCTATTTATCTGTGCCAGTCACTTGGCTAGAATATGATGA
ATGAACGGTGGTAGGCTCAAGTTTTTAAAAGGTTTTCTGTTGCAAATTCTTGCAGAATAACAGT
TTTATCAGTGGTGATAGAAGAGGAGGTAGTCTTGCTACTCAGGAACGTAGTGTCAGGAGTGCTG
AGCCGCAGCCAGCGCCCACGGCCTGGAAGGTGACCCACGTGGTCACCACAGCGATTTCATCCAG
CAGAAACTGAATGAGCGAAACAGTTGGAGGCGGTGCGGTCCTTTCCAGTACGATTTTCTTTAAA
GTTTCCTGTATCACCGGGCTTGTTTATATTGCAAACTTAATATTAAATATTTTTCCTATTTATA
AATTATATGAGGAACACAACAGTCAGATTTTTCTGTAATAAAGTTGCCACAGTTGTTCCCCAGC
CGCACAGTCCTGCAGTTGGGCAGATTAGTGAGACTAAGCTCGCCCCACAGTGGCCCACTCCACC
TGAGCCAGGCAGCAGAAGCCTGCATGCAGGACACTTTGGAGCCTTGTGAATGGCAAGCGAAAGT
GATAAGGCTGCTCGTGGATGGAAGAGATGGGATCTTAGGAGTTGGCTTCCTTAAATGTCAGACT
TCAGAGGCGCCTGTGTGTCCCGTCCCAGTCGTCCCCCTCCCCCCCACTTCCTTCCCCCTGGCCA
AAAACATCTGCCGTAAATAAAGGTGCCTGAAATCCTGCTACTGGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005413294	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000001015
	ENSCLAP00000001015.1

RefSeq Acc Id:	XP_005413294 ⟸ XM_005413237
- UniProtKB:	A0A8C2UHH0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAETDPKTMQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVEEL EGENKIPATQKS hide sequence

Ensembl Acc Id:

ENSCLAP00000001015 ⟸ ENSCLAT00000001053

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000000780	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000001053	ENTREZGENE
	ENSCLAT00000001053.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.430	UniProtKB/TrEMBL
InterPro	HS1-bd	UniProtKB/TrEMBL
NCBI Gene	Hsbp1	ENTREZGENE
PANTHER	HEAT SHOCK FACTOR-BINDING PROTEIN 1	UniProtKB/TrEMBL
	PTHR19424	UniProtKB/TrEMBL
Pfam	HSBP1	UniProtKB/TrEMBL
UniProt	A0A8C2UHH0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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