HSBP1 (heat shock factor binding protein 1) - Rat Genome Database

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Gene: HSBP1 (heat shock factor binding protein 1) Sus scrofa
Analyze
Symbol: HSBP1
Name: heat shock factor binding protein 1
RGD ID: 13880123
Description: ENCODES a protein that exhibits identical protein binding (inferred); transcription corepressor activity (inferred); INVOLVED IN endodermal cell differentiation (ortholog); muscle contraction (ortholog); FOUND IN axon cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: heat shock factor-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: HSBP1P   HSBP1P2  
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl64,788,313 - 4,798,191 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.164,795,203 - 4,798,158 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
axon cytoplasm  (IEA)
cytosol  (IBA)
nucleus  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HSBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl64,788,313 - 4,798,191 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.164,795,203 - 4,798,158 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HSBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381683,807,978 - 83,819,737 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1683,719,311 - 83,819,737 (+)EnsemblGRCh38hg38GRCh38
GRCh371683,841,583 - 83,853,342 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361682,399,094 - 82,404,095 (+)NCBINCBI36Build 36hg18NCBI36
Build 341682,399,093 - 82,404,095NCBI
Celera1668,142,699 - 68,147,697 (+)NCBICelera
Cytogenetic Map16q23.3NCBI
HuRef1669,593,015 - 69,598,111 (+)NCBIHuRef
CHM1_11685,252,863 - 85,257,959 (+)NCBICHM1_1
T2T-CHM13v2.01689,873,707 - 89,885,464 (+)NCBIT2T-CHM13v2.0
Hsbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398120,071,277 - 120,075,668 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8120,071,227 - 120,075,661 (+)EnsemblGRCm39 Ensembl
GRCm388119,344,538 - 119,348,929 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8119,344,488 - 119,348,922 (+)EnsemblGRCm38mm10GRCm38
MGSCv378121,868,438 - 121,872,829 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368122,230,515 - 122,234,906 (+)NCBIMGSCv36mm8
Celera8123,560,285 - 123,564,676 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map867.54NCBI
Hsbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81964,309,703 - 64,314,035 (+)NCBIGRCr8
mRatBN7.21947,401,039 - 47,405,373 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1947,400,966 - 47,435,821 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1954,195,408 - 54,199,740 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01954,875,905 - 54,880,295 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01957,090,522 - 57,094,858 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01951,985,196 - 51,989,528 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1951,985,170 - 51,989,544 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01962,733,736 - 62,738,068 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41949,589,574 - 49,594,599 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11949,594,451 - 49,599,480 (+)NCBI
Celera1946,660,240 - 46,664,572 (+)NCBICelera
Cytogenetic Map19q12NCBI
Hsbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955564396,133 - 401,251 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955564396,985 - 400,975 (-)NCBIChiLan1.0ChiLan1.0
HSBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21893,552,976 - 93,558,004 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11699,471,430 - 99,476,467 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01664,429,442 - 64,434,467 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11683,821,821 - 83,830,023 (+)NCBIpanpan1.1PanPan1.1panPan2
HSBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1568,474,960 - 68,479,206 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl568,475,948 - 68,479,145 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha568,488,788 - 68,492,964 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0568,773,360 - 68,777,530 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl568,773,360 - 68,777,489 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1568,720,849 - 68,725,018 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0568,557,358 - 68,561,548 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0568,973,475 - 68,977,644 (-)NCBIUU_Cfam_GSD_1.0
Hsbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934928,158,396 - 28,162,850 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366413,911,943 - 3,916,397 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1569,224,715 - 69,228,607 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660476,592,908 - 6,597,926 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hsbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247463,685,189 - 3,690,642 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247463,686,523 - 3,690,585 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HSBP1
75 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000054182   ⟹   ENSSSCP00000057389
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl64,793,920 - 4,798,191 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000093246   ⟹   ENSSSCP00000074791
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl64,788,313 - 4,798,191 (-)Ensembl
RefSeq Acc Id: NM_001097485   ⟹   NP_001090954
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.164,795,203 - 4,798,158 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001090954 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABK55663 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000074791
  ENSSSCP00000074791.1
RefSeq Acc Id: NP_001090954   ⟸   NM_001097485
- UniProtKB: A1XQV7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000057389   ⟸   ENSSSCT00000054182
Ensembl Acc Id: ENSSSCP00000074791   ⟸   ENSSSCT00000093246


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031892 Ensembl
  ENSSSCG00000057749 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000093246 ENTREZGENE
  ENSSSCT00000093246.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.430 UniProtKB/TrEMBL
InterPro HS1-bd UniProtKB/TrEMBL
KEGG Report ssc:100579143 UniProtKB/TrEMBL
NCBI Gene HSBP1 ENTREZGENE
PANTHER HEAT SHOCK FACTOR-BINDING PROTEIN 1 UniProtKB/TrEMBL
  PTHR19424 UniProtKB/TrEMBL
Pfam HSBP1 UniProtKB/TrEMBL
UniProt A0A287BMT8_PIG UniProtKB/TrEMBL
  A1XQV7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:97098 ENTREZGENE