Hsbp1 (heat shock factor binding protein 1) - Rat Genome Database

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Gene: Hsbp1 (heat shock factor binding protein 1) Ictidomys tridecemlineatus
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Symbol: Hsbp1
Name: heat shock factor binding protein 1
RGD ID: 12663513
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN endodermal cell differentiation (ortholog); muscle contraction (ortholog); FOUND IN cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: heat shock factor-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934928,158,396 - 28,162,850 (-)NCBI
SpeTri2.0NW_0049366413,911,943 - 3,916,397 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoskeleton  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Hsbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934928,158,396 - 28,162,850 (-)NCBI
SpeTri2.0NW_0049366413,911,943 - 3,916,397 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1683,807,978 - 83,819,737 (+)EnsemblGRCh38hg38GRCh38
GRCh381683,807,978 - 83,819,737 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371683,841,583 - 83,853,342 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361682,399,094 - 82,404,095 (+)NCBINCBI36hg18NCBI36
Build 341682,399,093 - 82,404,095NCBI
Celera1668,142,699 - 68,147,697 (+)NCBI
Cytogenetic Map16q23.3NCBI
HuRef1669,593,015 - 69,598,111 (+)NCBIHuRef
CHM1_11685,252,863 - 85,257,959 (+)NCBICHM1_1
Hsbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398120,071,277 - 120,075,668 (+)NCBIGRCm39mm39
GRCm39 Ensembl8120,071,227 - 120,075,661 (+)Ensembl
GRCm388119,344,538 - 119,348,929 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8119,344,488 - 119,348,922 (+)EnsemblGRCm38mm10GRCm38
MGSCv378121,868,438 - 121,872,829 (+)NCBIGRCm37mm9NCBIm37
MGSCv368122,230,515 - 122,234,906 (+)NCBImm8
Celera8123,560,285 - 123,564,676 (+)NCBICelera
Cytogenetic Map8E1NCBI
Hsbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21947,401,039 - 47,405,373 (+)NCBI
Rnor_6.0 Ensembl1951,985,170 - 51,989,544 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01951,985,196 - 51,989,528 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01962,733,736 - 62,738,068 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41949,589,574 - 49,594,599 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11949,594,451 - 49,599,480 (+)NCBI
Celera1946,660,240 - 46,664,572 (+)NCBICelera
Cytogenetic Map19q12NCBI
Hsbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955564396,133 - 401,251 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955564396,985 - 400,975 (-)NCBIChiLan1.0ChiLan1.0
HSBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11683,821,821 - 83,830,023 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01664,429,442 - 64,434,467 (+)NCBIMhudiblu_PPA_v0panPan3
HSBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1568,474,960 - 68,479,206 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl568,475,948 - 68,479,145 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha568,488,788 - 68,492,964 (-)NCBI
ROS_Cfam_1.0568,773,360 - 68,777,530 (-)NCBI
UMICH_Zoey_3.1568,720,849 - 68,725,018 (-)NCBI
UNSW_CanFamBas_1.0568,557,358 - 68,561,548 (-)NCBI
UU_Cfam_GSD_1.0568,973,475 - 68,977,644 (-)NCBI
HSBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl64,793,920 - 4,798,191 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.164,795,203 - 4,798,158 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HSBP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1569,224,715 - 69,228,607 (+)NCBI
Vero_WHO_p1.0NW_0236660476,592,908 - 6,597,926 (-)NCBI
Hsbp1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247463,686,523 - 3,690,585 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005335495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005335495   ⟹   XP_005335552
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934928,158,396 - 28,162,850 (-)NCBI
SpeTri2.0NW_0049366413,911,943 - 3,916,397 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005335552 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005335552   ⟸   XM_005335495
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000030876 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000031239 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000035653 ENTREZGENE, UniProtKB/TrEMBL
InterPro HS1-bd UniProtKB/TrEMBL
NCBI Gene Hsbp1 ENTREZGENE
PANTHER PTHR19424 UniProtKB/TrEMBL
Pfam HSBP1 UniProtKB/TrEMBL
UniProt A0A287DCI3_ICTTR UniProtKB/TrEMBL