Ap4e1 (adaptor related protein complex 4 subunit epsilon 1) - Rat Genome Database

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Gene: Ap4e1 (adaptor related protein complex 4 subunit epsilon 1) Chinchilla lanigera
Analyze
Symbol: Ap4e1
Name: adaptor related protein complex 4 subunit epsilon 1
RGD ID: 8831740
Description: ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); congenital disorder of glycosylation Ig (ortholog); FOUND IN AP-4 adaptor complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adaptor related protein complex 4 epsilon 1 subunit; adaptor-related protein complex 4, epsilon 1 subunit; AP-4 complex subunit epsilon-1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554093,476,527 - 3,532,683 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ap4e1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554093,476,527 - 3,532,683 (-)NCBIChiLan1.0ChiLan1.0
AP4E1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381550,907,492 - 51,005,895 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1550,908,672 - 51,005,895 (+)EnsemblGRCh38hg38GRCh38
GRCh371551,200,880 - 51,298,092 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361548,988,238 - 49,085,389 (+)NCBINCBI36Build 36hg18NCBI36
Build 341548,988,237 - 49,082,859NCBI
Celera1528,093,991 - 28,191,516 (+)NCBICelera
Cytogenetic Map15q21.2NCBI
HuRef1528,030,752 - 28,128,080 (+)NCBIHuRef
CHM1_11551,319,007 - 51,416,201 (+)NCBICHM1_1
T2T-CHM13v2.01548,714,133 - 48,813,558 (+)NCBIT2T-CHM13v2.0
Ap4e1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392126,850,600 - 126,911,734 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2126,850,637 - 126,909,829 (+)EnsemblGRCm39 Ensembl
GRCm382127,008,679 - 127,069,814 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2127,008,717 - 127,067,909 (+)EnsemblGRCm38mm10GRCm38
MGSCv372126,834,447 - 126,895,550 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362126,700,152 - 126,761,255 (+)NCBIMGSCv36mm8
Celera2128,232,201 - 128,296,951 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.76NCBI
Ap4e1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83134,726,338 - 134,792,820 (+)NCBIGRCr8
mRatBN7.23114,272,997 - 114,339,484 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3114,272,956 - 114,336,752 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3118,164,967 - 118,228,802 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03126,760,516 - 126,824,351 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03124,420,900 - 124,484,727 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03119,484,714 - 119,548,491 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3119,484,677 - 119,548,621 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03126,010,551 - 126,074,949 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43114,550,205 - 114,615,150 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3113,113,130 - 113,177,269 (+)NCBICelera
Cytogenetic Map3q36NCBI
AP4E1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21640,154,942 - 40,252,467 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11544,335,335 - 44,439,393 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01529,857,818 - 29,957,158 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11548,195,475 - 48,292,133 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1548,195,581 - 48,288,895 (+)Ensemblpanpan1.1panPan2
AP4E1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13016,745,567 - 16,800,662 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3016,745,620 - 16,797,704 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3016,671,629 - 16,726,720 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03016,890,099 - 16,945,193 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3016,879,004 - 16,945,179 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13016,812,394 - 16,867,478 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03016,929,887 - 16,984,952 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03017,036,542 - 17,091,637 (+)NCBIUU_Cfam_GSD_1.0
Ap4e1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864095,008,953 - 95,071,552 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647112,857,323 - 12,916,718 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647112,857,259 - 12,919,615 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AP4E1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1120,880,456 - 120,946,031 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11120,880,460 - 120,946,045 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21134,278,410 - 134,343,745 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AP4E1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12632,358,432 - 32,447,207 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2632,357,199 - 32,446,274 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048108,710,522 - 108,835,633 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ap4e1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247319,298,016 - 9,348,284 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247319,295,151 - 9,348,394 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_013510289   ⟹   XP_013365743
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554093,476,527 - 3,532,683 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013365743 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013365743   ⟸   XM_013510289
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Ap4e1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 Ap4e1  adaptor related protein complex 4 subunit epsilon 1    adaptor related protein complex 4 epsilon 1 subunit  Symbol and/or name change 5135510 APPROVED
2016-08-03 Ap4e1  adaptor related protein complex 4 epsilon 1 subunit    adaptor-related protein complex 4, epsilon 1 subunit  Symbol and/or name change 5135510 APPROVED