Ap4e1 (adaptor related protein complex 4 subunit epsilon 1)

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Gene: Ap4e1 (adaptor related protein complex 4 subunit epsilon 1) Rattus norvegicus

Analyze

Symbol:

Ap4e1

Name:

adaptor related protein complex 4 subunit epsilon 1

RGD ID:

1562199

Description:

Predicted to have cargo adaptor activity. Predicted to be involved in receptor-mediated endocytosis. Predicted to localize to AP-4 adaptor complex. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 51 and stuttering. Orthologous to human AP4E1 (adaptor related protein complex 4 subunit epsilon 1); INTERACTS WITH bisphenol A; glyphosate; thioacetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

adaptor-related protein complex 4, epsilon 1 subunit; adaptor-related protein complex AP-4, epsilon 1; AP-4 complex subunit epsilon-1; LOC311404; RGD1562199; similar to Adapter-related protein complex 4 epsilon 1 subunit (Epsilon subunit of AP-4); similar to Adapter-related protein complex 4 epsilon 1 subunit (Epsilon subunit of AP-4) (AP-4 adapter complex epsilon subunit)

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	114,272,997 - 114,339,484 (+)	NCBI
Rnor_6.0 Ensembl	3	119,484,677 - 119,548,621 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	119,484,714 - 119,548,491 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	126,010,551 - 126,074,949 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	114,550,205 - 114,615,150 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	3	113,113,130 - 113,177,269 (+)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colon cancer (ISO)

congenital disorder of glycosylation Ig (ISO)

Familial Persistent Stuttering 1 (ISO)

hereditary spastic paraplegia 51 (ISO)

intellectual disability (ISO)

paraplegia (ISO)

stuttering (ISS)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

4,4'-diaminodiphenylmethane (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

choline (ISO)

cyclosporin A (ISO)

doxorubicin (ISO)

folic acid (ISO)

glyphosate (EXP)

hydrogen peroxide (ISO)

L-methionine (ISO)

lead(0) (ISO)

lead(2+) (ISO)

methyl methanesulfonate (ISO)

paracetamol (ISO)

PCB138 (ISO)

rac-lactic acid (ISO)

sodium arsenate (ISO)

sodium fluoride (ISO)

thioacetamide (EXP)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein transport (IEA)

receptor-mediated endocytosis (IBA)

Cellular Component

AP-4 adaptor complex (IBA,ISO)

Golgi apparatus (IEA)

Molecular Function

cargo adaptor activity (IBA)

protein binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline
3.	RGD automated data pipeline
4.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10066790

Genomics

Comparative Map Data

Ap4e1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	114,272,997 - 114,339,484 (+)	NCBI
Rnor_6.0 Ensembl	3	119,484,677 - 119,548,621 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	119,484,714 - 119,548,491 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	126,010,551 - 126,074,949 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	114,550,205 - 114,615,150 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	3	113,113,130 - 113,177,269 (+)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

AP4E1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	15	50,908,672 - 51,005,895 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	15	50,908,569 - 51,005,900 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	15	51,200,880 - 51,298,092 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	48,988,238 - 49,085,389 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	15	48,988,237 - 49,082,859	NCBI
Celera	15	28,093,991 - 28,191,516 (+)	NCBI
Cytogenetic Map	15	q21.2	NCBI
HuRef	15	28,030,752 - 28,128,080 (+)	NCBI		HuRef
CHM1_1	15	51,319,007 - 51,416,201 (+)	NCBI		CHM1_1

Ap4e1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	126,850,600 - 126,911,734 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	2	126,850,637 - 126,909,829 (+)	Ensembl
GRCm38	2	127,008,679 - 127,069,814 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	127,008,717 - 127,067,909 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	126,834,447 - 126,895,550 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	126,700,152 - 126,761,255 (+)	NCBI			mm8
Celera	2	128,232,201 - 128,296,951 (+)	NCBI		Celera
Cytogenetic Map	2	F1	NCBI
cM Map	2	61.76	NCBI

Ap4e1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955409	3,476,527 - 3,532,683 (-)	NCBI	ChiLan1.0	ChiLan1.0

AP4E1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	15	48,195,475 - 48,292,133 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	48,195,581 - 48,288,895 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	15	29,857,818 - 29,957,158 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

AP4E1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	16,745,567 - 16,800,662 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	16,745,620 - 16,797,704 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	16,671,629 - 16,726,720 (+)	NCBI
ROS_Cfam_1.0	30	16,890,099 - 16,945,193 (+)	NCBI
UMICH_Zoey_3.1	30	16,812,394 - 16,867,478 (+)	NCBI
UNSW_CanFamBas_1.0	30	16,929,887 - 16,984,952 (+)	NCBI
UU_Cfam_GSD_1.0	30	17,036,542 - 17,091,637 (+)	NCBI

Ap4e1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	95,008,953 - 95,071,552 (+)	NCBI
SpeTri2.0	NW_004936471	12,857,259 - 12,919,615 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AP4E1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	120,807,328 - 120,946,052 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	120,880,460 - 120,946,045 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	134,278,410 - 134,343,745 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

AP4E1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	32,358,432 - 32,447,207 (-)	NCBI
ChlSab1.1 Ensembl	26	32,357,199 - 32,446,274 (-)	Ensembl

Ap4e1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624731	9,295,151 - 9,348,394 (-)	NCBI

Position Markers

D3Mit12

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	119,509,110 - 119,509,260	NCBI	Rnor6.0
Rnor_5.0	3	126,034,947 - 126,035,097	UniSTS	Rnor5.0
RGSC_v3.4	3	114,574,601 - 114,574,752	RGD	RGSC3.4
RGSC_v3.4	3	114,574,602 - 114,574,752	UniSTS	RGSC3.4
RGSC_v3.1	3	114,480,095 - 114,480,482	RGD
Celera	3	113,137,443 - 113,137,593	UniSTS
RH 2.0 Map	3	660.6	RGD
SHRSP x BN Map	3	54.0299	RGD
Cytogenetic Map	3	q36	UniSTS

RH132863

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	119,548,771 - 119,548,962	NCBI	Rnor6.0
Rnor_5.0	3	126,074,613 - 126,074,804	UniSTS	Rnor5.0
RGSC_v3.4	3	114,615,443 - 114,615,634	UniSTS	RGSC3.4
Celera	3	113,177,562 - 113,177,753	UniSTS
RH 3.4 Map	3	997.8	UniSTS
Cytogenetic Map	3	q36	UniSTS

BE101110

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	119,492,764 - 119,492,945	NCBI	Rnor6.0
Rnor_5.0	3	126,018,601 - 126,018,782	UniSTS	Rnor5.0
RGSC_v3.4	3	114,558,255 - 114,558,436	UniSTS	RGSC3.4
Celera	3	113,121,096 - 113,121,277	UniSTS
RH 3.4 Map	3	996.8	UniSTS
Cytogenetic Map	3	q36	UniSTS

RH141233

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	2	104,039,514 - 104,039,701	NCBI	Rnor6.0
Rnor_6.0	3	119,500,161 - 119,500,348	NCBI	Rnor6.0
Rnor_5.0	3	126,025,998 - 126,026,185	UniSTS	Rnor5.0
Rnor_5.0	2	123,761,527 - 123,761,714	UniSTS	Rnor5.0
RGSC_v3.4	3	114,565,653 - 114,565,840	UniSTS	RGSC3.4
RGSC_v3.4	2	104,333,613 - 104,333,800	UniSTS	RGSC3.4
Celera	3	113,128,494 - 113,128,681	UniSTS
Celera	2	97,106,105 - 97,106,292	UniSTS
Cytogenetic Map	3	q36	UniSTS
Cytogenetic Map	2	q24	UniSTS

AU049137

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	119,505,928 - 119,506,066	NCBI	Rnor6.0
Rnor_5.0	3	126,031,765 - 126,031,903	UniSTS	Rnor5.0
RGSC_v3.4	3	114,571,420 - 114,571,558	UniSTS	RGSC3.4
Celera	3	113,134,261 - 113,134,399	UniSTS
Cytogenetic Map	3	q36	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	30114912	123700444	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	30846101	172879276	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	39248391	140271184	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	43295930	163640485	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	43295930	163640485	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	45406058	127023997	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	45406058	177699992	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	48561928	155263151	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	51821836	124513579	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	51822008	120917851	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	54630948	119830094	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	54630948	119830094	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	54630948	119830094	Rat
1581568	Rf53	Renal function QTL 53			total urine protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	58204463	170534769	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	61241033	165369047	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	62922868	127023997	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	66711607	119830094	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	66711607	119830094	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	72672290	127023997	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	72973445	127023997	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	78700444	123700444	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	total urine protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	81136227	154416635	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	83817637	119509260	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	88910015	133910015	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	94788365	139788365	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	97009185	142009185	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	99465522	168732722	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	100730984	119830094	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	101058963	146058963	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	102152812	155263151	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	102466149	147466149	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	103141814	176418101	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	103141814	176418101	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	103141814	176418101	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	103141944	170934860	Rat
1582216	Bw65	Body weight QTL 65	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	106900427	119830094	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	114376250	159376250	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	117303473	141971336	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	119471263	164471263	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	6
Count of miRNA genes:	4
Interacting mature miRNAs:	6
Transcripts:	ENSRNOT00000037390
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		4	18	6	16	6	2	2	67	26	29	9	2
Low	3	39	39	35	3	35	6	9	7	9	12	2	6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000037390 ⟹ ENSRNOP00000037349

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	119,484,677 - 119,548,621 (+)	Ensembl

RefSeq Acc Id:

NM_001191742 ⟹ NP_001178671

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	114,272,997 - 114,336,752 (+)	NCBI
Rnor_6.0	3	119,484,714 - 119,548,478 (+)	NCBI
Rnor_5.0	3	126,010,551 - 126,074,949 (+)	NCBI
Celera	3	113,113,130 - 113,177,269 (+)	NCBI

Sequence:

show sequence

ATGAGCGACATGGTGGAGAGGACGCTGACCGCACTGCCGGGGCTCTTCTTGCAGAACCAGCTGG
GAGGGCCTGCGGCCTCCAGAGCACCCTTCTTCTCCAGGCTGGGCGGCCTCATCCGTGGCGTCAC
TGCGCTCTCATCCAAGCACGAAGAAGAGAAGTTAATCCAGCAGGAACTGAGTAGTCTGAAGGCG
ACTGTTTCTGCTCCTACTACAACACTGAAAATGATGAAGGAATGTATGGTGAGACTTATATACT
GTGAGATGCTTGGATACGATGCTTCTTTTGGTTATATACATGCAATCAAGTTGGCCCAACAAGG
AAACCTCTTAGAAAAAAGAGTGGGTTATTTGGCTGTTTCTCTGTTTCTACATGAAAGTCATGAA
CTTTTGCTTCTCCTTGTGAATACAGTGGTAAAGGACCTGCAGAGCACTAATCTGGTAGAAGTGT
GTATGGCACTCACTGTCGTCAGCCAGATTTTCCCTCGAGAAATGATTCCAGCTGTCCTTCCACT
AATAGAAGAGAAACTCCAACATTCTAAGGAGATTATACGAAGAAAAGCAGTTCTGGCATTATAC
AAATTTTATCTCATTGCCCCTAATCAAGTACAGCATATCCATACTAAGTTTCGGAAAGCACTCT
GTGACAGAGATGTTGGGGTCATGGCTGCCTCTTTGCATATATACCTTAGGATGATTAAGGAAAA
TTCTTCTGGATATAAAGACTTGACTGAGAGTTTTGTAACAATTTTAAAGCAGGTGGTGGGGGGA
AAGCTCCCTGTAGAGTTCAGTTACCACAGTGTGCCAGCGCCATGGTTACAGATTCAGCTCTTGA
GAATACTGGGACTGCTGGGAAAAGACGATGAAAGGACAAGTGAACTAATGTATGATGTTCTTGA
TGAATCCTTACGAAGAGCCGAGTTAAATCACAATGTCACTTACGCTATTCTGTTTGAGTGTGTA
CACACAATCTATTCTATTTATCCTAAATCAGAATTACTTGAGAAGGCTGCCAAGTGCATTGGAA
AATTTGTTCTGTCACCTAAAATAAACCTCAAATATTTAGGACTGAAGGCTCTTACCTATGTTAT
CCAGCAGGATCCTTCTCTGGCTCTTCAACACCAGATAACCATAATTGAATGCCTAGACCACCCT
GATCCCATTATTAAAAGAGAGACTCTGGAACTTCTTTACAGAATTACAAATGCACAGAATGTAG
TAGTTATTGTACAGAAAATGCTTGAATATTTACATCAGAGCAAAGAAGAGTACATCATCATCAA
CTTAGTCGGCAAAATAGCTGAATTGGCTGAGAAATATGCTCCTGACAACGTGTGGTTCATTCAG
ACGATGAATGCTGTGTTTTCAGTGGGAGGAGATGTAATGCACCCAGACATTCTCAGTAACTTTC
TGAGACTGCTAGCAGAAGGTTTTGATGATGAAACAGAAGATCAACAGTTAAGACTCTATGCAGT
TCAGTCTTACCTCACCTTACTAGACATGGAAAACACTTTCTATCCACAGAGATTTCTTCAAGTT
ATGAGTTGGGTATTAGGAGAGTATTCCTACCTCTTAGATAGAGAAAGCCCCGAGGCAGTTATGA
CCAGGCTCTACAAGTTACTGAGGAGTGACTCCATTTCTTCAGAAACGAAAGCATGGTTGTTTGC
TGCAGTAACCAAGTTAACACCTCAAGCTCATTCTTCTCCCATAGTTGAGAACTTAATCCAAGAA
TTCACTGTATCCTTGAATACTTGTCTGAGACAACATGCATTTGAATTGAAACATCTACATGAAA
ATGAAGAGCTTATGAAGAGCTTGCTTCAGAGTGCTCAGAATTGTGACGACATCATGGCAGATGC
TTCTTTATCTTTTCTGGATGGTTTTGTGGCTGAAGGACTCAGTCAGGGAGCAGCACCTTATAAG
CCCCGTCACCAGCGCCAAGAGGAGCAGCTCTCTCAGGAAAAAGTTCTCAATTTTGAACCATATG
GACTATCATTTTCTTCATCTGGCTTCACTGGACGACAGTCTCCTGCTGGCGTTTCTCTGGGCTC
AGATATATCTGGAAACAGTGCTGAAACAGGGCTGAAAGAGGCAGGTAGCCTGAAGATGGACGGC
ATAAAGAAATTATGGGGTAAAGAAGGTTATCTCCCCAAGAAGGAGAGTGGAGCTGCTGATAAAC
TGGAAGCCGCACATGCTCCTGCAGAGAGTGCAATGATGGAGAATGTAGACCAAGCCATGACTAG
GAAGGACCAAGCTCAAGGCCACACCCCTTCTACAGAGGAGAAAGAAAAGCAGCTGTTGGCATCA
TCGCTGTTTGTTGGGCTAGGACCAGAAAATACGATCAATTTGTTGGGAAAAGCAGATGTTGTGT
CTTACAAGTTCAGGAGGAAGTCAAAACCCAAGGTAGCCCAAAGTGACAAGATGCCCAGCGCTCA
TGCCGCTCCCTCCTCCACCCTTAGCCCTGTGTCCGATGTGGCTGGGGGGGATGAGGACAGTCTG
AGCGCTGCGGATAGAGGAGACGGGGAGCTTGGTTCAGAGCTGTTGGGTTCTGAGTCTGTCTTGG
AGCTGCCCTCAGTTGAAAACCTCTCGAGTGTCAGCTTGCCCGTGTCTTCTTTGTTTGCGGGTAA
CGACATGGAAGTATTTCATCCCCCTTCATCCTCTGCAACTTCAGCCGTCAAGGAAGTCAGTTTG
GCTGCTCTGTTGGAAGAAACTCCTGAATGCAGGCGTTCAGCTCTCGTGGAAATCTGTAGTAATG
AAACTGTGGCTGTGTCTTCTTACAAAGTCTGGAAGGATGAGTGTTTATTGCTGGTGTGCTCAGT
CACTAGTAAGACTGATTCAGAGTTCACAGATGCTCAATTAGAAATTTTTCCTTTGGAAAATTTC
AAGATCATTGAGCAGCCTGGATGTCCTTCACCTGTGATGGAAGCAGAAAGCACCAAATCCTTCC
AATATGGCGTGCAGATGGAAAGCCCTTGTGTAGAGGGGACTCTCTCTGGTTTTATAAAGTATCA
AATGATGGATACACATCCTGTTCAACTGGAATTTTCCATGAACTTATCACTACTAGATTTTATT
AGGCCATTAAAGATCTCAACTGAAGACTTTGGCAAACTCTGGTTGTCTTTTGCAAATGATGTGA
AGCAAAATATAAAAATATCAGAGCCTCGAGTTGCACTGGCTTCTGTCCTGACAGAGCTGCAGCA
GAAACTCAGACTTTGCGTGGTTGACGTCATAGGCAGTGAAGGTCTGCTGGCCTGTAAGCTGCTT
CCGTCCACCCCCTGTATCCTGCACTGCCGAGTACACGCTGACGTGGTAGCCCTGTGGTTCCGAT
CCTCTAGCTCTGTTCTTTCAGACTGTTTATCTTGTCACTGTCAGAAAGTGATGCAGACATCCTA
GCAAAGTTCTGTTAAGTTTTACTTTTTTCACATAAATGGTTTACATTTACAACCTT

hide sequence

RefSeq Acc Id:

XM_006234921 ⟹ XP_006234983

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	119,491,729 - 119,548,491 (+)	NCBI
Rnor_5.0	3	126,010,551 - 126,074,949 (+)	NCBI

Sequence:

show sequence

ACGATGCTTCTTTTGGTTATATACATGCAATCAAGTTGGCCCAACAAGGAAACCTCTTAGAAAA
AAGAGTGGGACCTGCAGAGCACTAATCTGGTAGAAGTGTGTATGGCACTCACTGTCGTCAGCCA
GATTTTCCCTCGAGAAATGATTCCAGCTGTCCTTCCACTAATAGAAGAGAAACTCCAACATTCT
AAGGAGATTATACGAAGAAAAGCAGTTCTGGCATTATACAAATTTTATCTCATTGCCCCTAATC
AAGTACAGCATATCCATACTAAGTTTCGGAAAGCACTCTGTGACAGAGATGTTGGGGTCATGGC
TGCCTCTTTGCATATATACCTTAGGATGATTAAGGAAAATTCTTCTGGATATAAAGACTTGACT
GAGAGTTTTGTAACAATTTTAAAGCAGGTGGTGGGGGGAAAGCTCCCTGTAGAGTTCAGTTACC
ACAGTGTGCCAGCGCCATGGTTACAGATTCAGCTCTTGAGAATACTGGGACTGCTGGGAAAAGA
CGATGAAAGGACAAGTGAACTAATGTATGATGTTCTTGATGAATCCTTACGAAGAGCCGAGTTA
AATCACAATGTCACTTACGCTATTCTGTTTGAGTGTGTACACACAATCTATTCTATTTATCCTA
AATCAGAATTACTTGAGAAGGCTGCCAAGTGCATTGGAAAATTTGTTCTGTCACCTAAAATAAA
CCTCAAATATTTAGGACTGAAGGCTCTTACCTATGTTATCCAGCAGGATCCTTCTCTGGCTCTT
CAACACCAGATAACCATAATTGAATGCCTAGACCACCCTGATCCCATTATTAAAAGAGAGACTC
TGGAACTTCTTTACAGAATTACAAATGCACAGAATGTAGTAGTTATTGTACAGAAAATGCTTGA
ATATTTACATCAGAGCAAAGAAGAGTACATCATCATCAACTTAGTCGGCAAAATAGCTGAATTG
GCTGAGAAATATGCTCCTGACAACGTGTGGTTCATTCAGACGATGAATGCTGTGTTTTCAGTGG
GAGGAGATGTAATGCACCCAGACATTCTCAGTAACTTTCTGAGACTGCTAGCAGAAGGTTTTGA
TGATGAAACAGAAGATCAACAGTTAAGACTCTATGCAGTTCAGTCTTACCTCACCTTACTAGAC
ATGGAAAACACTTTCTATCCACAGAGATTTCTTCAAGTTATGAGTTGGGTATTAGGAGAGTATT
CCTACCTCTTAGATAGAGAAAGCCCCGAGGCAGTTATGACCAGGCTCTACAAGTTACTGAGGAG
TGACTCCATTTCTTCAGAAACGAAAGCATGGTTGTTTGCTGCAGTAACCAAGTTAACACCTCAA
GCTCATTCTTCTCCCATAGTTGAGAACTTAATCCAAGAATTCACTGTATCCTTGAATACTTGTC
TGAGACAACATGCATTTGAATTGAAACATCTACATGAAAATGAAGAGCTTATGAAGAGCTTGCT
TCAGAGTGCTCAGAATTGTGACGACATCATGGCAGATGCTTCTTTATCTTTTCTGGATGGTTTT
GTGGCTGAAGGACTCAGTCAGGGAGCAGCACCTTATAAGCCCCGTCACCAGCGCCAAGAGGAGC
AGCTCTCTCAGGAAAAAGTTCTCAATTTTGAACCATATGGACTATCATTTTCTTCATCTGGCTT
CACTGGACGACAGTCTCCTGCTGGCGTTTCTCTGGGCTCAGATATATCTGGAAACAGTGCTGAA
ACAGGGCTGAAAGAGGCAGGTAGCCTGAAGATGGACGGCATAAAGAAATTATGGGGTAAAGAAG
GTTATCTCCCCAAGAAGGAGAGTGGAGCTGCTGATAAACTGGAAGCCGCACATGCTCCTGCAGA
GAGTGCAATGATGGAGAATGTAGACCAAGCCATGACTAGGAAGGACCAAGCTCAAGGCCACACC
CCTTCTACAGAGGAGAAAGAAAAGCAGCTGTTGGCATCATCGCTGTTTGTTGGGCTAGGACCAG
AAAATACGATCAATTTGTTGGGAAAAGCAGATGTTGTGTCTTACAAGTTCAGGAGGAAGTCAAA
ACCCAAGGTAGCCCAAAGTGACAAGATGCCCAGCGCTCATGCCGCTCCCTCCTCCACCCTTAGC
CCTGTGTCCGATGTGGCTGGGGGGGATGAGGACAGTCTGAGCGCTGCGGATAGAGGAGACGGGG
AGCTTGGTTCAGAGCTGTTGGGTTCTGAGTCTGTCTTGGAGCTGCCCTCAGTTGAAAACCTCTC
GAGTGTCAGCTTGCCCGTGTCTTCTTTGTTTGCGGGTAACGACATGGAAGTATTTCATCCCCCT
TCATCCTCTGCAACTTCAGCCGTCAAGGAAGTCAGTTTGGCTGCTCTGTTGGAAGAAACTCCTG
AATGCAGGCGTTCAGCTCTCGTGGAAATCTGTAGTAATGAAACTGTGGCTGTGTCTTCTTACAA
AGTCTGGAAGGATGAGTGTTTATTGCTGGTGTGCTCAGTCACTAGTAAGACTGATTCAGAGTTC
ACAGATGCTCAATTAGAAATTTTTCCTTTGGAAAATTTCAAGATCATTGAGCAGCCTGGATGTC
CTTCACCTGTGATGGAAGCAGAAAGCACCAAATCCTTCCAATATGGCGTGCAGATGGAAAGCCC
TTGTGTAGAGGGGACTCTCTCTGGTTTTATAAAGTATCAAATGATGGATACACATCCTGTTCAA
CTGGAATTTTCCATGAACTTATCACTACTAGATTTTATTAGGCCATTAAAGATCTCAACTGAAG
ACTTTGGCAAACTCTGGTTGTCTTTTGCAAATGATGTGAAGCAAAATATAAAAATATCAGAGCC
TCGAGTTGCACTGGCTTCTGTCCTGACAGAGCTGCAGCAGAAACTCAGACTTTGCGTGGTTGAC
GTCATAGGCAGTGAAGGTCTGCTGGCCTGTAAGCTGCTTCCGTCCACCCCCTGTATCCTGCACT
GCCGAGTACACGCTGACGTGGTAGCCCTGTGGTTCCGATCCTCTAGCTCTGTTCTTTCAGACTG
TTTATCTTGTCACTGTCAGAAAGTGATGCAGACATCCTAGCAAAGTTCTGTTAAGTTTTACTTT
TTTCACATAAATGGTTTACATTTACAACCTTACCAAAGTAAAAA

hide sequence

RefSeq Acc Id:

XM_008762176 ⟹ XP_008760398

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	119,509,838 - 119,548,491 (+)	NCBI

Sequence:

show sequence

ATCTATATAATGTGCATAATTAGAAAATTATTATTATTAAGGAATTTAATAAGTCAGCTTTAAA
ATAGTAACAACAGAATCACACCCGAGAGTTAAGAACCTCATAATTACTCAGTCCTTGAGGCTGG
GCACTTCATCAGCCAGAATGGTCCCACATTGTCACTGTCACAGGAAAGGATAGAGATGGGACAC
AATAGTGAACACATAACCTGTGGTCTCTCGTGTCAAAAGGCAAAGTGCCTCAGCAGTCCCAGTC
TGGAAGCCCAGAACGTGCCTGGATTACCCCTTGGTGCTTAGTTTACTATGAAAGTTCAGAAATG
CTGGTTGTGCTGTCAGTAAAGGAAGCAGCAGCAGCAGCAGCAGCAGCATCAGTGACAGGGCAAA
TCAACTCTGTGGCAAGAGGGAGGCCAAGCCAGGCTACCTGAAGGTGTAGCCCAGAGTTGGGTGG
GTCCTTCCCACATCAGTCAAGGCTATCAGAGCACTTCTTCAGATGCAGCTCCTTACTGTGGTAA
TTATGTGTGGCAACAGTGGGAGCTTGCCATCAGGGGGAATGTTTCCAGGTCATTTCCAGCTTTA
TTAATACTTTACTATTTGTATATACTACAACACAATGTGTTATTATTTAGAATGTTCATACGCT
TTTCAAAACATGAAATAAATGATGTATAAGAGAAAAAAACAATTCTCGAACAATCCTGTATGTA
AAAAAAAAGATTTATCAAGCATGTGTAGGATTGGGAGCTGAGTAGGCAGCATGATATGCAGGCC
TGAGGAGCTGAGCTGAGATCCTAACACTCAGGTAAAAAGCTGGGCACAGAAACAAACACAAACT
CCTCTAACCAAAATGTGTGGTGCCTCCTTCAGCGGGGTTTAATCATGTAGTCTTAGGGTGGACA
ACCAGCAGCAATGGCCGTGACCTGTGTTGTTTTTGGGAGCCTTTGGGACCTTTCTGACTAATAA
CTCGTCTAATAACCAACCCCTGTTTTCTAGGAAAAGTGTTGCCCGCTGCTGCAAGGGAGATTAT
ACGAAGAAAAGCAGTTCTGGCATTATACAAATTTTATCTCATTGCCCCTAATCAAGTACAGCAT
ATCCATACTAAGTTTCGGAAAGCACTCTGTGACAGAGATGTTGGGGTCATGGCTGCCTCTTTGC
ATATATACCTTAGGATGATTAAGGAAAATTCTTCTGGATATAAAGACTTGACTGAGAGTTTTGT
AACAATTTTAAAGCAGGTGGTGGGGGGAAAGCTCCCTGTAGAGTTCAGTTACCACAGTGTGCCA
GCGCCATGGTTACAGATTCAGCTCTTGAGAATACTGGGACTGCTGGGAAAAGACGATGAAAGGA
CAAGTGAACTAATGTATGATGTTCTTGATGAATCCTTACGAAGAGCCGAGTTAAATCACAATGT
CACTTACGCTATTCTGTTTGAGTGTGTACACACAATCTATTCTATTTATCCTAAATCAGAATTA
CTTGAGAAGGCTGCCAAGTGCATTGGAAAATTTGTTCTGTCACCTAAAATAAACCTCAAATATT
TAGGACTGAAGGCTCTTACCTATGTTATCCAGCAGGATCCTTCTCTGGCTCTTCAACACCAGAT
AACCATAATTGAATGCCTAGACCACCCTGATCCCATTATTAAAAGAGAGACTCTGGAACTTCTT
TACAGAATTACAAATGCACAGAATGTAGTAGTTATTGTACAGAAAATGCTTGAATATTTACATC
AGAGCAAAGAAGAGTACATCATCATCAACTTAGTCGGCAAAATAGCTGAATTGGCTGAGAAATA
TGCTCCTGACAACGTGTGGTTCATTCAGACGATGAATGCTGTGTTTTCAGTGGGAGGAGATGTA
ATGCACCCAGACATTCTCAGTAACTTTCTGAGACTGCTAGCAGAAGGTTTTGATGATGAAACAG
AAGATCAACAGTTAAGACTCTATGCAGTTCAGTCTTACCTCACCTTACTAGACATGGAAAACAC
TTTCTATCCACAGAGATTTCTTCAAGTTATGAGTTGGGTATTAGGAGAGTATTCCTACCTCTTA
GATAGAGAAAGCCCCGAGGCAGTTATGACCAGGCTCTACAAGTTACTGAGGAGTGACTCCATTT
CTTCAGAAACGAAAGCATGGTTGTTTGCTGCAGTAACCAAGTTAACACCTCAAGCTCATTCTTC
TCCCATAGTTGAGAACTTAATCCAAGAATTCACTGTATCCTTGAATACTTGTCTGAGACAACAT
GCATTTGAATTGAAACATCTACATGAAAATGAAGAGCTTATGAAGAGCTTGCTTCAGAGTGCTC
AGAATTGTGACGACATCATGGCAGATGCTTCTTTATCTTTTCTGGATGGTTTTGTGGCTGAAGG
ACTCAGTCAGGGAGCAGCACCTTATAAGCCCCGTCACCAGCGCCAAGAGGAGCAGCTCTCTCAG
GAAAAAGTTCTCAATTTTGAACCATATGGACTATCATTTTCTTCATCTGGCTTCACTGGACGAC
AGTCTCCTGCTGGCGTTTCTCTGGGCTCAGATATATCTGGAAACAGTGCTGAAACAGGGCTGAA
AGAGGCAGGTAGCCTGAAGATGGACGGCATAAAGAAATTATGGGGTAAAGAAGGTTATCTCCCC
AAGAAGGAGAGTGGAGCTGCTGATAAACTGGAAGCCGCACATGCTCCTGCAGAGAGTGCAATGA
TGGAGAATGTAGACCAAGCCATGACTAGGAAGGACCAAGCTCAAGGCCACACCCCTTCTACAGA
GGAGAAAGAAAAGCAGCTGTTGGCATCATCGCTGTTTGTTGGGCTAGGACCAGAAAATACGATC
AATTTGTTGGGAAAAGCAGATGTTGTGTCTTACAAGTTCAGGAGGAAGTCAAAACCCAAGGTAG
CCCAAAGTGACAAGATGCCCAGCGCTCATGCCGCTCCCTCCTCCACCCTTAGCCCTGTGTCCGA
TGTGGCTGGGGGGGATGAGGACAGTCTGAGCGCTGCGGATAGAGGAGACGGGGAGCTTGGTTCA
GAGCTGTTGGGTTCTGAGTCTGTCTTGGAGCTGCCCTCAGTTGAAAACCTCTCGAGTGTCAGCT
TGCCCGTGTCTTCTTTGTTTGCGGGTAACGACATGGAAGTATTTCATCCCCCTTCATCCTCTGC
AACTTCAGCCGTCAAGGAAGTCAGTTTGGCTGCTCTGTTGGAAGAAACTCCTGAATGCAGGCGT
TCAGCTCTCGTGGAAATCTGTAGTAATGAAACTGTGGCTGTGTCTTCTTACAAAGTCTGGAAGG
ATGAGTGTTTATTGCTGGTGTGCTCAGTCACTAGTAAGACTGATTCAGAGTTCACAGATGCTCA
ATTAGAAATTTTTCCTTTGGAAAATTTCAAGATCATTGAGCAGCCTGGATGTCCTTCACCTGTG
ATGGAAGCAGAAAGCACCAAATCCTTCCAATATGGCGTGCAGATGGAAAGCCCTTGTGTAGAGG
GGACTCTCTCTGGTTTTATAAAGTATCAAATGATGGATACACATCCTGTTCAACTGGAATTTTC
CATGAACTTATCACTACTAGATTTTATTAGGCCATTAAAGATCTCAACTGAAGACTTTGGCAAA
CTCTGGTTGTCTTTTGCAAATGATGTGAAGCAAAATATAAAAATATCAGAGCCTCGAGTTGCAC
TGGCTTCTGTCCTGACAGAGCTGCAGCAGAAACTCAGACTTTGCGTGGTTGACGTCATAGGCAG
TGAAGGTCTGCTGGCCTGTAAGCTGCTTCCGTCCACCCCCTGTATCCTGCACTGCCGAGTACAC
GCTGACGTGGTAGCCCTGTGGTTCCGATCCTCTAGCTCTGTTCTTTCAGACTGTTTATCTTGTC
ACTGTCAGAAAGTGATGCAGACATCCTAGCAAAGTTCTGTTAAGTTTTACTTTTTTCACATAAA
TGGTTTACATTTACAACCTTACCAAAGTAAAAA

hide sequence

RefSeq Acc Id:

XM_039104988 ⟹ XP_038960916

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	114,275,920 - 114,339,484 (+)	NCBI

RefSeq Acc Id:

XM_039104989 ⟹ XP_038960917

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	114,302,389 - 114,339,484 (+)	NCBI

RefSeq Acc Id:

XM_039104990 ⟹ XP_038960918

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	114,302,388 - 114,339,484 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178671	(Get FASTA)	NCBI Sequence Viewer
	XP_038960916	(Get FASTA)	NCBI Sequence Viewer
	XP_038960917	(Get FASTA)	NCBI Sequence Viewer
	XP_038960918	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL80098	(Get FASTA)	NCBI Sequence Viewer
	EDL80099	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001178671 ⟸ NM_001191742

- UniProtKB:

D3ZX21 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSDMVERTLTALPGLFLQNQLGGPAASRAPFFSRLGGLIRGVTALSSKHEEEKLIQQELSSLKA
TVSAPTTTLKMMKECMVRLIYCEMLGYDASFGYIHAIKLAQQGNLLEKRVGYLAVSLFLHESHE
LLLLLVNTVVKDLQSTNLVEVCMALTVVSQIFPREMIPAVLPLIEEKLQHSKEIIRRKAVLALY
KFYLIAPNQVQHIHTKFRKALCDRDVGVMAASLHIYLRMIKENSSGYKDLTESFVTILKQVVGG
KLPVEFSYHSVPAPWLQIQLLRILGLLGKDDERTSELMYDVLDESLRRAELNHNVTYAILFECV
HTIYSIYPKSELLEKAAKCIGKFVLSPKINLKYLGLKALTYVIQQDPSLALQHQITIIECLDHP
DPIIKRETLELLYRITNAQNVVVIVQKMLEYLHQSKEEYIIINLVGKIAELAEKYAPDNVWFIQ
TMNAVFSVGGDVMHPDILSNFLRLLAEGFDDETEDQQLRLYAVQSYLTLLDMENTFYPQRFLQV
MSWVLGEYSYLLDRESPEAVMTRLYKLLRSDSISSETKAWLFAAVTKLTPQAHSSPIVENLIQE
FTVSLNTCLRQHAFELKHLHENEELMKSLLQSAQNCDDIMADASLSFLDGFVAEGLSQGAAPYK
PRHQRQEEQLSQEKVLNFEPYGLSFSSSGFTGRQSPAGVSLGSDISGNSAETGLKEAGSLKMDG
IKKLWGKEGYLPKKESGAADKLEAAHAPAESAMMENVDQAMTRKDQAQGHTPSTEEKEKQLLAS
SLFVGLGPENTINLLGKADVVSYKFRRKSKPKVAQSDKMPSAHAAPSSTLSPVSDVAGGDEDSL
SAADRGDGELGSELLGSESVLELPSVENLSSVSLPVSSLFAGNDMEVFHPPSSSATSAVKEVSL
AALLEETPECRRSALVEICSNETVAVSSYKVWKDECLLLVCSVTSKTDSEFTDAQLEIFPLENF
KIIEQPGCPSPVMEAESTKSFQYGVQMESPCVEGTLSGFIKYQMMDTHPVQLEFSMNLSLLDFI
RPLKISTEDFGKLWLSFANDVKQNIKISEPRVALASVLTELQQKLRLCVVDVIGSEGLLACKLL
PSTPCILHCRVHADVVALWFRSSSSVLSDCLSCHCQKVMQTS

hide sequence

RefSeq Acc Id:

XP_006234983 ⟸ XM_006234921

- Peptide Label:

isoform X1

- Sequence:

show sequence

MALTVVSQIFPREMIPAVLPLIEEKLQHSKEIIRRKAVLALYKFYLIAPNQVQHIHTKFRKALC
DRDVGVMAASLHIYLRMIKENSSGYKDLTESFVTILKQVVGGKLPVEFSYHSVPAPWLQIQLLR
ILGLLGKDDERTSELMYDVLDESLRRAELNHNVTYAILFECVHTIYSIYPKSELLEKAAKCIGK
FVLSPKINLKYLGLKALTYVIQQDPSLALQHQITIIECLDHPDPIIKRETLELLYRITNAQNVV
VIVQKMLEYLHQSKEEYIIINLVGKIAELAEKYAPDNVWFIQTMNAVFSVGGDVMHPDILSNFL
RLLAEGFDDETEDQQLRLYAVQSYLTLLDMENTFYPQRFLQVMSWVLGEYSYLLDRESPEAVMT
RLYKLLRSDSISSETKAWLFAAVTKLTPQAHSSPIVENLIQEFTVSLNTCLRQHAFELKHLHEN
EELMKSLLQSAQNCDDIMADASLSFLDGFVAEGLSQGAAPYKPRHQRQEEQLSQEKVLNFEPYG
LSFSSSGFTGRQSPAGVSLGSDISGNSAETGLKEAGSLKMDGIKKLWGKEGYLPKKESGAADKL
EAAHAPAESAMMENVDQAMTRKDQAQGHTPSTEEKEKQLLASSLFVGLGPENTINLLGKADVVS
YKFRRKSKPKVAQSDKMPSAHAAPSSTLSPVSDVAGGDEDSLSAADRGDGELGSELLGSESVLE
LPSVENLSSVSLPVSSLFAGNDMEVFHPPSSSATSAVKEVSLAALLEETPECRRSALVEICSNE
TVAVSSYKVWKDECLLLVCSVTSKTDSEFTDAQLEIFPLENFKIIEQPGCPSPVMEAESTKSFQ
YGVQMESPCVEGTLSGFIKYQMMDTHPVQLEFSMNLSLLDFIRPLKISTEDFGKLWLSFANDVK
QNIKISEPRVALASVLTELQQKLRLCVVDVIGSEGLLACKLLPSTPCILHCRVHADVVALWFRS
SSSVLSDCLSCHCQKVMQTS

hide sequence

RefSeq Acc Id:

XP_008760398 ⟸ XM_008762176

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAASLHIYLRMIKENSSGYKDLTESFVTILKQVVGGKLPVEFSYHSVPAPWLQIQLLRILGLLG
KDDERTSELMYDVLDESLRRAELNHNVTYAILFECVHTIYSIYPKSELLEKAAKCIGKFVLSPK
INLKYLGLKALTYVIQQDPSLALQHQITIIECLDHPDPIIKRETLELLYRITNAQNVVVIVQKM
LEYLHQSKEEYIIINLVGKIAELAEKYAPDNVWFIQTMNAVFSVGGDVMHPDILSNFLRLLAEG
FDDETEDQQLRLYAVQSYLTLLDMENTFYPQRFLQVMSWVLGEYSYLLDRESPEAVMTRLYKLL
RSDSISSETKAWLFAAVTKLTPQAHSSPIVENLIQEFTVSLNTCLRQHAFELKHLHENEELMKS
LLQSAQNCDDIMADASLSFLDGFVAEGLSQGAAPYKPRHQRQEEQLSQEKVLNFEPYGLSFSSS
GFTGRQSPAGVSLGSDISGNSAETGLKEAGSLKMDGIKKLWGKEGYLPKKESGAADKLEAAHAP
AESAMMENVDQAMTRKDQAQGHTPSTEEKEKQLLASSLFVGLGPENTINLLGKADVVSYKFRRK
SKPKVAQSDKMPSAHAAPSSTLSPVSDVAGGDEDSLSAADRGDGELGSELLGSESVLELPSVEN
LSSVSLPVSSLFAGNDMEVFHPPSSSATSAVKEVSLAALLEETPECRRSALVEICSNETVAVSS
YKVWKDECLLLVCSVTSKTDSEFTDAQLEIFPLENFKIIEQPGCPSPVMEAESTKSFQYGVQME
SPCVEGTLSGFIKYQMMDTHPVQLEFSMNLSLLDFIRPLKISTEDFGKLWLSFANDVKQNIKIS
EPRVALASVLTELQQKLRLCVVDVIGSEGLLACKLLPSTPCILHCRVHADVVALWFRSSSSVLS
DCLSCHCQKVMQTS

hide sequence

RefSeq Acc Id:

ENSRNOP00000037349 ⟸ ENSRNOT00000037390

RefSeq Acc Id:	XP_038960916 ⟸ XM_039104988
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038960918 ⟸ XM_039104990
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038960917 ⟸ XM_039104989
- Peptide Label:	isoform X2

Protein Domains

AP4E_app_platf

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692394

Promoter ID:

EPDNEW_R2919

Type:

multiple initiation site

Name:

Ap4e1_1

Description:

adaptor-related protein complex 4, epsilon 1 subunit

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	119,484,694 - 119,484,754	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562199	AgrOrtholog
Ensembl Genes	ENSRNOG00000022938	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000037349	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000037390	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
InterPro	AP4_complex_esu	UniProtKB/TrEMBL
	AP4E1_C	UniProtKB/TrEMBL
	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	Clathrin/coatomer_adapt-like_N	UniProtKB/TrEMBL
KEGG Report	rno:311404	UniProtKB/TrEMBL
NCBI Gene	311404	ENTREZGENE
Pfam	Adaptin_N	UniProtKB/TrEMBL
	AP4E_app_platf	UniProtKB/TrEMBL
PhenoGen	Ap4e1	PhenoGen
PIRSF	AP4_complex_epsilon	UniProtKB/TrEMBL
SMART	AP4E_app_platf	UniProtKB/TrEMBL
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
UniProt	D3ZX21	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-05-03	Ap4e1	adaptor related protein complex 4 subunit epsilon 1	Ap4e1	adaptor-related protein complex 4, epsilon 1 subunit	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Ap4e1	adaptor-related protein complex 4, epsilon 1 subunit	Ap4e1	adaptor-related protein complex AP-4, epsilon 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-29	Ap4e1	adaptor-related protein complex AP-4, epsilon 1	RGD1562199_predicted	similar to Adapter-related protein complex 4 epsilon 1 subunit (Epsilon subunit of AP-4) (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-10	RGD1562199_predicted	similar to Adapter-related protein complex 4 epsilon 1 subunit (Epsilon subunit of AP-4) (predicted)		similar to Adapter-related protein complex 4 epsilon 1 subunit (Epsilon subunit of AP-4) (AP-4 adapter complex epsilon subunit) (predicted)	Name updated	1299863	APPROVED
2006-03-07	RGD1562199_predicted	similar to Adapter-related protein complex 4 epsilon 1 subunit (Epsilon subunit of AP-4) (AP-4 adapter complex epsilon subunit) (predicted)	LOC311404	similar to Adapter-related protein complex 4 epsilon 1 subunit (Epsilon subunit of AP-4) (AP-4 adapter complex epsilon subunit)	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC311404	similar to Adapter-related protein complex 4 epsilon 1 subunit (Epsilon subunit of AP-4) (AP-4 adapter complex epsilon subunit)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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